RNA–Protein interactions for RNA: ENST00000614496.4

MSH6-213, Transcript of mutS homolog 6, humanhuman

TSL 1 (best) BASIC

Gene MSH6, Length 4,150 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-213ENST00000614496 MTMR1Q13613 665 aa13.41□□□□□ -0.26
MSH6-213ENST00000614496 KRT39Q6A163 491 aa13.41□□□□□ -0.26
MSH6-213ENST00000614496 SEPT14Q6ZU15 432 aa13.41□□□□□ -0.26
MSH6-213ENST00000614496 PALM2Q8IXS6 379 aa13.41□□□□□ -0.26
MSH6-213ENST00000614496 MKNK1Q9BUB5 465 aa13.41□□□□□ -0.26
MSH6-213ENST00000614496 RAVER2Q9HCJ3 691 aaKnown RBP13.41□□□□□ -0.26
MSH6-213ENST00000614496 ADAM22Q9P0K1 906 aa13.41□□□□□ -0.26
MSH6-213ENST00000614496 TPX2Q9ULW0 747 aaKnown RBP13.41□□□□□ -0.26
MSH6-213ENST00000614496 ZC3H4Q9UPT8 1303 aaKnown RBP13.41□□□□□ -0.26
MSH6-213ENST00000614496 PHRF1Q9P1Y6 1649 aaKnown RBP13.4□□□□□ -0.26
MSH6-213ENST00000614496 LRRD1A4D1F6 860 aa13.4□□□□□ -0.26
MSH6-213ENST00000614496 QARSP47897 775 aaKnown RBP13.4□□□□□ -0.26
MSH6-213ENST00000614496 IZUMO3Q5VZ72 239 aa13.4□□□□□ -0.26
MSH6-213ENST00000614496 SPATA21Q7Z572 469 aa13.4□□□□□ -0.26
MSH6-213ENST00000614496 PODNQ7Z5L7 613 aa13.4□□□□□ -0.26
MSH6-213ENST00000614496 SLC47A2Q86VL8 602 aa13.4□□□□□ -0.26
MSH6-213ENST00000614496 FUKQ8N0W3 1084 aa13.4□□□□□ -0.26
MSH6-213ENST00000614496 ATP8B4Q8TF62 1192 aa13.4□□□□□ -0.26
MSH6-213ENST00000614496 DHX38Q92620 1227 aaKnown RBP13.4□□□□□ -0.26
MSH6-213ENST00000614496 VTI1AQ96AJ9 217 aa13.4□□□□□ -0.26
MSH6-213ENST00000614496 TGFB1I1O43294 461 aa13.4□□□□□ -0.26
MSH6-213ENST00000614496 DIAPH2O60879 1101 aa13.4□□□□□ -0.26
MSH6-213ENST00000614496 KRT19P08727 400 aa13.4□□□□□ -0.26
MSH6-213ENST00000614496 ITGA8P53708 1063 aa13.4□□□□□ -0.26
MSH6-213ENST00000614496 TRPC3Q13507 836 aa13.4□□□□□ -0.26
MSH6-213ENST00000614496 MTERF2Q49AM1 385 aa13.4□□□□□ -0.26
MSH6-213ENST00000614496 ZNF572Q7Z3I7 529 aaPredicted RBP13.4□□□□□ -0.26
MSH6-213ENST00000614496 CBWD2Q8IUF1 395 aa13.4□□□□□ -0.26
MSH6-213ENST00000614496 DEPTORQ8TB45 409 aa13.4□□□□□ -0.26
MSH6-213ENST00000614496 TMEM117Q9H0C3 514 aa13.4□□□□□ -0.26
MSH6-213ENST00000614496 NOP53Q9NZM5 478 aaKnown RBP13.4□□□□□ -0.26
MSH6-213ENST00000614496 IGSF9BQ9UPX0 1349 aa13.4□□□□□ -0.26
MSH6-213ENST00000614496 UBOX5O94941 541 aa13.4□□□□□ -0.26
MSH6-213ENST00000614496 GYS1P13807 737 aa13.4□□□□□ -0.26
MSH6-213ENST00000614496 PHLDB3Q6NSJ2 640 aa13.4□□□□□ -0.26
MSH6-213ENST00000614496 NLGN1Q8N2Q7 840 aa13.4□□□□□ -0.26
MSH6-213ENST00000614496 PIK3R5Q8WYR1 880 aa13.4□□□□□ -0.26
MSH6-213ENST00000614496 P3H4Q92791 437 aa13.4□□□□□ -0.26
MSH6-213ENST00000614496 FAM163AQ96GL9 167 aaPredicted RBP13.4□□□□□ -0.26
MSH6-213ENST00000614496 SNF8Q96H20 258 aa13.4□□□□□ -0.26
MSH6-213ENST00000614496 RAB3IPQ96QF0 476 aaPredicted RBP13.4□□□□□ -0.26
MSH6-213ENST00000614496 CDC42EP4Q9H3Q1 356 aaKnown RBP13.4□□□□□ -0.26
MSH6-213ENST00000614496 IGF2BP3O00425 579 aaKnown RBP eCLIP13.39□□□□□ -0.27
MSH6-213ENST00000614496 TAF11Q15544 211 aa13.39□□□□□ -0.27
MSH6-213ENST00000614496 ANKRD20A3Q5VUR7 823 aa13.39□□□□□ -0.27
MSH6-213ENST00000614496 TMEM270Q6UE05 265 aa13.39□□□□□ -0.27
MSH6-213ENST00000614496 HHIPL2Q6UWX4 724 aa13.39□□□□□ -0.27
MSH6-213ENST00000614496 LRRC57Q8N9N7 239 aa13.39□□□□□ -0.27
MSH6-213ENST00000614496 TRAF3IP1Q8TDR0 691 aaPredicted RBP13.39□□□□□ -0.27
MSH6-213ENST00000614496 RSAD2Q8WXG1 361 aa13.39□□□□□ -0.27
MSH6-213ENST00000614496 STMN2Q93045 179 aa13.39□□□□□ -0.27
MSH6-213ENST00000614496 ZKSCAN4Q969J2 545 aaPredicted RBP13.39□□□□□ -0.27
MSH6-213ENST00000614496 CRAMP1Q96RY5 1269 aa13.39□□□□□ -0.27
MSH6-213ENST00000614496 ZNF341Q9BYN7 854 aa13.39□□□□□ -0.27
MSH6-213ENST00000614496 L3MBTL1Q9Y468 752 aa13.39□□□□□ -0.27
MSH6-213ENST00000614496 ZNF142P52746 1687 aaPredicted RBP13.39□□□□□ -0.27
MSH6-213ENST00000614496 CES2O00748 559 aa13.39□□□□□ -0.27
MSH6-213ENST00000614496 CPP00450 1065 aa13.39□□□□□ -0.27
MSH6-213ENST00000614496 PLS3P13797 630 aa13.39□□□□□ -0.27
MSH6-213ENST00000614496 MAN1A1P33908 653 aa13.39□□□□□ -0.27
MSH6-213ENST00000614496 SEPT12Q8IYM1 358 aa13.39□□□□□ -0.27
MSH6-213ENST00000614496 C4orf33Q8N1A6 199 aa13.39□□□□□ -0.27
MSH6-213ENST00000614496 FBXL13Q8NEE6 735 aa13.39□□□□□ -0.27
MSH6-213ENST00000614496 TATDN2Q93075 761 aa13.39□□□□□ -0.27
MSH6-213ENST00000614496 TOPORSQ9NS56 1045 aaPredicted RBP13.39□□□□□ -0.27
MSH6-213ENST00000614496 DCTN4Q9UJW0 460 aa13.39□□□□□ -0.27
MSH6-213ENST00000614496 WDR3Q9UNX4 943 aaKnown RBP eCLIP13.39□□□□□ -0.27
MSH6-213ENST00000614496 ROBO3Q96MS0 1386 aa13.39□□□□□ -0.27
MSH6-213ENST00000614496 ATP2A2P16615 1042 aaKnown RBP13.39□□□□□ -0.27
MSH6-213ENST00000614496 SNRNP35Q16560 246 aaKnown RBP13.39□□□□□ -0.27
MSH6-213ENST00000614496 PPP1R21Q6ZMI0 780 aa13.39□□□□□ -0.27
MSH6-213ENST00000614496 HES6Q96HZ4 224 aa13.39□□□□□ -0.27
MSH6-213ENST00000614496 ALG13Q9NP73 1137 aaKnown RBP13.39□□□□□ -0.27
MSH6-213ENST00000614496 OLFML3Q9NRN5 406 aa13.39□□□□□ -0.27
MSH6-213ENST00000614496 ZBED4O75132 1171 aa13.39□□□□□ -0.27
MSH6-213ENST00000614496 TROVE2P10155 538 aaKnown RBP eCLIP13.39□□□□□ -0.27
MSH6-213ENST00000614496 Q4G0T1 1027 aa13.39□□□□□ -0.27
MSH6-213ENST00000614496 AMIGO3Q86WK7 504 aa13.39□□□□□ -0.27
MSH6-213ENST00000614496 BBOF1Q8ND07 529 aa13.39□□□□□ -0.27
MSH6-213ENST00000614496 AGBL1Q96MI9 1066 aa13.39□□□□□ -0.27
MSH6-213ENST00000614496 MAK16Q9BXY0 300 aaKnown RBP13.39□□□□□ -0.27
MSH6-213ENST00000614496 ALS2Q96Q42 1657 aa13.38□□□□□ -0.27
MSH6-213ENST00000614496 GAKO14976 1311 aa13.38□□□□□ -0.27
MSH6-213ENST00000614496 RARAP10276 462 aa13.38□□□□□ -0.27
MSH6-213ENST00000614496 BBS9Q3SYG4 887 aa13.38□□□□□ -0.27
MSH6-213ENST00000614496 LMNTD2Q8IXW0 634 aa13.38□□□□□ -0.27
MSH6-213ENST00000614496 ETNPPLQ8TBG4 499 aa13.38□□□□□ -0.27
MSH6-213ENST00000614496 FAM84AQ96KN4 292 aa13.38□□□□□ -0.27
MSH6-213ENST00000614496 CTNNAL1Q9UBT7 734 aa13.38□□□□□ -0.27
MSH6-213ENST00000614496 SUGT1Q9Y2Z0 365 aa13.38□□□□□ -0.27
MSH6-213ENST00000614496 USP54Q70EL1 1684 aa13.38□□□□□ -0.27
MSH6-213ENST00000614496 GTPBP10A4D1E9 387 aaKnown RBP13.38□□□□□ -0.27
MSH6-213ENST00000614496 YWHABP31946 246 aaKnown RBP13.38□□□□□ -0.27
MSH6-213ENST00000614496 ERFP50548 548 aa13.38□□□□□ -0.27
MSH6-213ENST00000614496 POLGP54098 1239 aaPredicted RBP13.38□□□□□ -0.27
MSH6-213ENST00000614496 PRKG1Q13976 671 aa13.38□□□□□ -0.27
MSH6-213ENST00000614496 MUM1Q2TAK8 710 aa13.38□□□□□ -0.27
MSH6-213ENST00000614496 APOBEC3HQ6NTF7 200 aaKnown RBP13.38□□□□□ -0.27
MSH6-213ENST00000614496 CYFIP1Q7L576 1253 aa13.38□□□□□ -0.27
MSH6-213ENST00000614496 OTOP1Q7RTM1 612 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms