RNA–Protein interactions for RNA: ENST00000613099.4

VPS13D-213, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS13D, Length 16,245 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-213ENST00000613099 WDR45BQ5MNZ6 344 aa5.23□□□□□ -1.57
VPS13D-213ENST00000613099 KRT39Q6A163 491 aa5.23□□□□□ -1.57
VPS13D-213ENST00000613099 NEK5Q6P3R8 708 aa5.23□□□□□ -1.57
VPS13D-213ENST00000613099 RIBC1Q8N443 379 aaPredicted RBP5.23□□□□□ -1.57
VPS13D-213ENST00000613099 OR9Q1Q8NGQ5 310 aa5.23□□□□□ -1.57
VPS13D-213ENST00000613099 SH3TC2Q8TF17 1288 aa5.23□□□□□ -1.57
VPS13D-213ENST00000613099 LPIN2Q92539 896 aa5.23□□□□□ -1.57
VPS13D-213ENST00000613099 LSM14BQ9BX40 385 aaKnown RBP5.23□□□□□ -1.57
VPS13D-213ENST00000613099 LRWD1Q9UFC0 647 aa5.23□□□□□ -1.57
VPS13D-213ENST00000613099 DMTF1Q9Y222 760 aa5.23□□□□□ -1.57
VPS13D-213ENST00000613099 RNF17Q9BXT8 1623 aaKnown RBP5.23□□□□□ -1.57
VPS13D-213ENST00000613099 HTR3EA5X5Y0 456 aa5.23□□□□□ -1.57
VPS13D-213ENST00000613099 OTUD4Q01804 1114 aaKnown RBP5.23□□□□□ -1.57
VPS13D-213ENST00000613099 ZNF268Q14587 947 aaPredicted RBP5.23□□□□□ -1.57
VPS13D-213ENST00000613099 INPP5AQ14642 412 aa5.23□□□□□ -1.57
VPS13D-213ENST00000613099 NR1I3Q14994 352 aa5.23□□□□□ -1.57
VPS13D-213ENST00000613099 MMTAG2Q9BU76 263 aaKnown RBP5.23□□□□□ -1.57
VPS13D-213ENST00000613099 TUBGCP4Q9UGJ1 667 aa5.23□□□□□ -1.57
VPS13D-213ENST00000613099 HERC5Q9UII4 1024 aaKnown RBP5.23□□□□□ -1.57
VPS13D-213ENST00000613099 EXOC7Q9UPT5 735 aa5.23□□□□□ -1.57
VPS13D-213ENST00000613099 IVNS1ABPQ9Y6Y0 642 aa5.23□□□□□ -1.57
VPS13D-213ENST00000613099 CENPBD1B2RD01 187 aa5.23□□□□□ -1.57
VPS13D-213ENST00000613099 TNFRSF8P28908 595 aa5.23□□□□□ -1.57
VPS13D-213ENST00000613099 HSD17B3P37058 310 aa5.23□□□□□ -1.57
VPS13D-213ENST00000613099 LAMC2Q13753 1193 aa5.23□□□□□ -1.57
VPS13D-213ENST00000613099 SNX27Q96L92 541 aa5.23□□□□□ -1.57
VPS13D-213ENST00000613099 PAGR1Q9BTK6 254 aa5.23□□□□□ -1.57
VPS13D-213ENST00000613099 MRPL44Q9H9J2 332 aaKnown RBP5.23□□□□□ -1.57
VPS13D-213ENST00000613099 NCAPD2Q15021 1401 aa5.23□□□□□ -1.57
VPS13D-213ENST00000613099 CSE1LP55060 971 aaKnown RBP5.23□□□□□ -1.57
VPS13D-213ENST00000613099 ATP6V1E2Q96A05 226 aa5.23□□□□□ -1.57
VPS13D-213ENST00000613099 MEIS3Q99687 375 aa5.23□□□□□ -1.57
VPS13D-213ENST00000613099 BRIP1Q9BX63 1249 aa5.23□□□□□ -1.57
VPS13D-213ENST00000613099 FKBP14Q9NWM8 211 aa5.23□□□□□ -1.57
VPS13D-213ENST00000613099 UVRAGQ9P2Y5 699 aa5.23□□□□□ -1.57
VPS13D-213ENST00000613099 CALB1P05937 261 aa5.23□□□□□ -1.57
VPS13D-213ENST00000613099 PORP16435 677 aaPredicted RBP5.23□□□□□ -1.57
VPS13D-213ENST00000613099 CHRNA3P32297 505 aa5.23□□□□□ -1.57
VPS13D-213ENST00000613099 KRT40Q6A162 431 aa5.23□□□□□ -1.57
VPS13D-213ENST00000613099 TEX28O15482 410 aa5.23□□□□□ -1.57
VPS13D-213ENST00000613099 EXOC3O60645 756 aa5.23□□□□□ -1.57
VPS13D-213ENST00000613099 DEPTORQ8TB45 409 aa5.23□□□□□ -1.57
VPS13D-213ENST00000613099 THTPAQ9BU02 230 aa5.23□□□□□ -1.57
VPS13D-213ENST00000613099 SERTAD1Q9UHV2 236 aa5.23□□□□□ -1.57
VPS13D-213ENST00000613099 NOS1APO75052 506 aaPredicted RBP5.23□□□□□ -1.57
VPS13D-213ENST00000613099 FGGP02679 453 aa5.23□□□□□ -1.57
VPS13D-213ENST00000613099 TRIP13Q15645 432 aaPredicted RBP5.23□□□□□ -1.57
VPS13D-213ENST00000613099 FAM47EQ6ZV65 393 aa5.23□□□□□ -1.57
VPS13D-213ENST00000613099 LRRC6Q86X45 466 aa5.23□□□□□ -1.57
VPS13D-213ENST00000613099 PDPRQ8NCN5 879 aa5.23□□□□□ -1.57
VPS13D-213ENST00000613099 VPS45Q9NRW7 570 aa5.23□□□□□ -1.57
VPS13D-213ENST00000613099 TRNAU1APQ9NX07 287 aaKnown RBP5.23□□□□□ -1.57
VPS13D-213ENST00000613099 STK39Q9UEW8 545 aa5.23□□□□□ -1.57
VPS13D-213ENST00000613099 CDH16O75309 829 aa5.23□□□□□ -1.57
VPS13D-213ENST00000613099 B3GALNT1O75752 331 aa5.23□□□□□ -1.57
VPS13D-213ENST00000613099 NSFP46459 744 aaKnown RBP5.23□□□□□ -1.57
VPS13D-213ENST00000613099 TBC1D9BQ66K14 1250 aa5.23□□□□□ -1.57
VPS13D-213ENST00000613099 MIGA2Q7L4E1 593 aa5.23□□□□□ -1.57
VPS13D-213ENST00000613099 HIPK4Q8NE63 616 aa5.23□□□□□ -1.57
VPS13D-213ENST00000613099 RMND5BQ96G75 393 aaPredicted RBP5.23□□□□□ -1.57
VPS13D-213ENST00000613099 AIFM2Q9BRQ8 373 aa5.23□□□□□ -1.57
VPS13D-213ENST00000613099 LIMA1Q9UHB6 759 aaKnown RBP5.23□□□□□ -1.57
VPS13D-213ENST00000613099 MYH10P35580 1976 aa5.23□□□□□ -1.57
VPS13D-213ENST00000613099 PNMA8CA0A1B0GUJ8 204 aa5.23□□□□□ -1.57
VPS13D-213ENST00000613099 A6NJR5 290 aa5.23□□□□□ -1.57
VPS13D-213ENST00000613099 SPDYE16A6NNV3 312 aaPredicted RBP5.23□□□□□ -1.57
VPS13D-213ENST00000613099 F8W810 466 aa5.23□□□□□ -1.57
VPS13D-213ENST00000613099 ZPR1O75312 459 aa5.23□□□□□ -1.57
VPS13D-213ENST00000613099 ZNF76P36508 570 aa5.23□□□□□ -1.57
VPS13D-213ENST00000613099 MREGQ8N565 214 aa5.23□□□□□ -1.57
VPS13D-213ENST00000613099 TSPAN14Q8NG11 270 aa5.23□□□□□ -1.57
VPS13D-213ENST00000613099 ZIM3Q96PE6 472 aa5.23□□□□□ -1.57
VPS13D-213ENST00000613099 SLC5A4Q9NY91 659 aa5.23□□□□□ -1.57
VPS13D-213ENST00000613099 OVOS2A0A0G2JMS6 1433 aa5.23□□□□□ -1.57
VPS13D-213ENST00000613099 A0A1B0GTH6 734 aa5.23□□□□□ -1.57
VPS13D-213ENST00000613099 ASLP04424 464 aa5.23□□□□□ -1.57
VPS13D-213ENST00000613099 CDC27P30260 824 aa5.23□□□□□ -1.57
VPS13D-213ENST00000613099 STAT1P42224 750 aa5.23□□□□□ -1.57
VPS13D-213ENST00000613099 CCT3P49368 545 aaKnown RBP5.23□□□□□ -1.57
VPS13D-213ENST00000613099 CYP27A1Q02318 531 aa5.23□□□□□ -1.57
VPS13D-213ENST00000613099 BFSP1Q12934 665 aa5.23□□□□□ -1.57
VPS13D-213ENST00000613099 RALGDSQ12967 914 aa5.23□□□□□ -1.57
VPS13D-213ENST00000613099 SLC15A2Q16348 729 aa5.23□□□□□ -1.57
VPS13D-213ENST00000613099 TTC30AQ86WT1 665 aa5.23□□□□□ -1.57
VPS13D-213ENST00000613099 UHMK1Q8TAS1 419 aaKnown RBP5.23□□□□□ -1.57
VPS13D-213ENST00000613099 ZCWPW1Q9H0M4 648 aa5.23□□□□□ -1.57
VPS13D-213ENST00000613099 RSPH9Q9H1X1 276 aaPredicted RBP5.23□□□□□ -1.57
VPS13D-213ENST00000613099 RNPEPQ9H4A4 650 aa5.23□□□□□ -1.57
VPS13D-213ENST00000613099 hCG_1984214I3L0E3 225 aa5.22□□□□□ -1.57
VPS13D-213ENST00000613099 ADAM17P78536 824 aa5.22□□□□□ -1.57
VPS13D-213ENST00000613099 NR1D2Q14995 579 aa5.22□□□□□ -1.57
VPS13D-213ENST00000613099 KRT79Q5XKE5 535 aa5.22□□□□□ -1.57
VPS13D-213ENST00000613099 FMR1NBQ8N0W7 255 aaPredicted RBP5.22□□□□□ -1.57
VPS13D-213ENST00000613099 JADE3Q92613 823 aa5.22□□□□□ -1.57
VPS13D-213ENST00000613099 SERPINB12Q96P63 405 aa5.22□□□□□ -1.57
VPS13D-213ENST00000613099 AP1M1Q9BXS5 423 aa5.22□□□□□ -1.57
VPS13D-213ENST00000613099 QPCTLQ9NXS2 382 aa5.22□□□□□ -1.57
VPS13D-213ENST00000613099 PHF24Q9UPV7 400 aa5.22□□□□□ -1.57
VPS13D-213ENST00000613099 POTECB2RU33 542 aa5.22□□□□□ -1.57
VPS13D-213ENST00000613099 MYCLP1P12525 358 aaPredicted RBP5.22□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms