RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-223ENST00000601341 CST5P28325 142 aaPredicted RBP12.72□□□□□ -0.37
VRK3-223ENST00000601341 CLCN3P51790 818 aa12.72□□□□□ -0.37
VRK3-223ENST00000601341 MARSP56192 900 aaKnown RBP12.72□□□□□ -0.37
VRK3-223ENST00000601341 CKAP4Q07065 602 aaKnown RBP12.72□□□□□ -0.37
VRK3-223ENST00000601341 GPS2Q13227 327 aa12.72□□□□□ -0.37
VRK3-223ENST00000601341 LINC01465Q8N7H1 131 aa12.72□□□□□ -0.37
VRK3-223ENST00000601341 DNAJC5GQ8N7S2 189 aa12.72□□□□□ -0.37
VRK3-223ENST00000601341 C7orf31Q8N865 590 aa12.72□□□□□ -0.37
VRK3-223ENST00000601341 PCSK9Q8NBP7 692 aaKnown RBP12.72□□□□□ -0.37
VRK3-223ENST00000601341 RNF149Q8NC42 400 aa12.72□□□□□ -0.37
VRK3-223ENST00000601341 KLHDC9Q8NEP7 349 aa12.72□□□□□ -0.37
VRK3-223ENST00000601341 TMEM174Q8WUU8 243 aa12.72□□□□□ -0.37
VRK3-223ENST00000601341 RUBCNQ92622 972 aa12.72□□□□□ -0.37
VRK3-223ENST00000601341 SYN2Q92777 582 aaPredicted RBP12.72□□□□□ -0.37
VRK3-223ENST00000601341 C2orf40Q9H1Z8 148 aa12.72□□□□□ -0.37
VRK3-223ENST00000601341 TMEM134Q9H6X4 195 aa12.72□□□□□ -0.37
VRK3-223ENST00000601341 ANKZF1Q9H8Y5 726 aa12.72□□□□□ -0.37
VRK3-223ENST00000601341 NHEJ1Q9H9Q4 299 aaPredicted RBP12.72□□□□□ -0.37
VRK3-223ENST00000601341 SIK3Q9Y2K2 1263 aa12.72□□□□□ -0.37
VRK3-223ENST00000601341 MYH11P35749 1972 aa12.72□□□□□ -0.37
VRK3-223ENST00000601341 SRGAP2CP0DJJ0 459 aa12.71□□□□□ -0.37
VRK3-223ENST00000601341 PRLRP16471 622 aa12.71□□□□□ -0.37
VRK3-223ENST00000601341 VAV2P52735 878 aa12.71□□□□□ -0.37
VRK3-223ENST00000601341 ITIH3Q06033 890 aa12.71□□□□□ -0.37
VRK3-223ENST00000601341 POU5F1BQ06416 359 aa12.71□□□□□ -0.37
VRK3-223ENST00000601341 CCDC40Q4G0X9 1142 aa12.71□□□□□ -0.37
VRK3-223ENST00000601341 CCDC122Q5T0U0 273 aa12.71□□□□□ -0.37
VRK3-223ENST00000601341 TAF3Q5VWG9 929 aa12.71□□□□□ -0.37
VRK3-223ENST00000601341 IQCEQ6IPM2 695 aa12.71□□□□□ -0.37
VRK3-223ENST00000601341 NFRKBQ6P4R8 1299 aa12.71□□□□□ -0.37
VRK3-223ENST00000601341 CXCL17Q6UXB2 119 aa12.71□□□□□ -0.37
VRK3-223ENST00000601341 RNF180Q86T96 592 aa12.71□□□□□ -0.37
VRK3-223ENST00000601341 SLC9A9Q8IVB4 645 aa12.71□□□□□ -0.37
VRK3-223ENST00000601341 ZBTB8OSQ8IWT0 167 aa12.71□□□□□ -0.37
VRK3-223ENST00000601341 C12orf56Q8IXR9 622 aa12.71□□□□□ -0.37
VRK3-223ENST00000601341 ZBTB10Q96DT7 871 aa12.71□□□□□ -0.37
VRK3-223ENST00000601341 IKZF4Q9H2S9 585 aa12.71□□□□□ -0.37
VRK3-223ENST00000601341 AKT3Q9Y243 479 aa12.71□□□□□ -0.37
VRK3-223ENST00000601341 SAR1BQ9Y6B6 198 aa12.71□□□□□ -0.37
VRK3-223ENST00000601341 A0A0U1RQJ8 604 aa12.71□□□□□ -0.38
VRK3-223ENST00000601341 TARSL2A2RTX5 802 aaKnown RBP12.71□□□□□ -0.38
VRK3-223ENST00000601341 MBLAC1A4D2B0 266 aaPredicted RBP12.71□□□□□ -0.38
VRK3-223ENST00000601341 SLC16A3O15427 465 aaKnown RBP12.71□□□□□ -0.38
VRK3-223ENST00000601341 MYCNP04198 464 aaPredicted RBP12.71□□□□□ -0.38
VRK3-223ENST00000601341 ASGR1P07306 291 aa12.71□□□□□ -0.38
VRK3-223ENST00000601341 CDC42EP1Q00587 391 aa12.71□□□□□ -0.38
VRK3-223ENST00000601341 SPA17Q15506 151 aa12.71□□□□□ -0.38
VRK3-223ENST00000601341 KCNA10Q16322 511 aa12.71□□□□□ -0.38
VRK3-223ENST00000601341 LONRF2Q1L5Z9 754 aa12.71□□□□□ -0.38
VRK3-223ENST00000601341 CDCA2Q69YH5 1023 aaPredicted RBP12.71□□□□□ -0.38
VRK3-223ENST00000601341 TAS1R3Q7RTX0 852 aa12.71□□□□□ -0.38
VRK3-223ENST00000601341 HDXQ7Z353 690 aa12.71□□□□□ -0.38
VRK3-223ENST00000601341 KIAA1328Q86T90 577 aa12.71□□□□□ -0.38
VRK3-223ENST00000601341 TRIM58Q8NG06 486 aa12.71□□□□□ -0.38
VRK3-223ENST00000601341 ATRIPQ8WXE1 791 aa12.71□□□□□ -0.38
VRK3-223ENST00000601341 JAKMIP2Q96AA8 810 aa12.71□□□□□ -0.38
VRK3-223ENST00000601341 NFKBIZQ9BYH8 718 aa12.71□□□□□ -0.38
VRK3-223ENST00000601341 AGPAT5Q9NUQ2 364 aa12.71□□□□□ -0.38
VRK3-223ENST00000601341 DMAC2Q9NW81 257 aa12.71□□□□□ -0.38
VRK3-223ENST00000601341 FRMD4BQ9Y2L6 1034 aa12.71□□□□□ -0.38
VRK3-223ENST00000601341 PTPN22Q9Y2R2 807 aa12.71□□□□□ -0.38
VRK3-223ENST00000601341 SSU72P8A0A1W2PR75 194 aa12.7□□□□□ -0.38
VRK3-223ENST00000601341 C17orf102A2RUQ5 167 aa12.7□□□□□ -0.38
VRK3-223ENST00000601341 HNRNPDLO14979 420 aaKnown RBP12.7□□□□□ -0.38
VRK3-223ENST00000601341 EPB41P11171 864 aaKnown RBP12.7□□□□□ -0.38
VRK3-223ENST00000601341 PSMC2P35998 433 aaKnown RBP12.7□□□□□ -0.38
VRK3-223ENST00000601341 CYP2J2P51589 502 aa12.7□□□□□ -0.38
VRK3-223ENST00000601341 ADAM17P78536 824 aa12.7□□□□□ -0.38
VRK3-223ENST00000601341 KIF5AQ12840 1032 aa12.7□□□□□ -0.38
VRK3-223ENST00000601341 BEND6Q5SZJ8 279 aaPredicted RBP12.7□□□□□ -0.38
VRK3-223ENST00000601341 CCSAPQ6IQ19 270 aaPredicted RBP12.7□□□□□ -0.38
VRK3-223ENST00000601341 FRMD5Q7Z6J6 570 aa12.7□□□□□ -0.38
VRK3-223ENST00000601341 KIAA0319LQ8IZA0 1049 aa12.7□□□□□ -0.38
VRK3-223ENST00000601341 BICD1Q96G01 975 aa12.7□□□□□ -0.38
VRK3-223ENST00000601341 CCDC42Q96M95 316 aa12.7□□□□□ -0.38
VRK3-223ENST00000601341 NLRP4Q96MN2 994 aa12.7□□□□□ -0.38
VRK3-223ENST00000601341 MKNK1Q9BUB5 465 aa12.7□□□□□ -0.38
VRK3-223ENST00000601341 METTL14Q9HCE5 456 aaKnown RBP12.7□□□□□ -0.38
VRK3-223ENST00000601341 HDAC6Q9UBN7 1215 aa12.7□□□□□ -0.38
VRK3-223ENST00000601341 ARMCX3Q9UH62 379 aaPredicted RBP12.7□□□□□ -0.38
VRK3-223ENST00000601341 GUCA1BQ9UMX6 200 aa12.7□□□□□ -0.38
VRK3-223ENST00000601341 SMIM35A0A1B0GVV1 85 aa12.69□□□□□ -0.38
VRK3-223ENST00000601341 EXOC3O60645 756 aa12.69□□□□□ -0.38
VRK3-223ENST00000601341 CABYRO75952 493 aa12.69□□□□□ -0.38
VRK3-223ENST00000601341 AKAP3O75969 853 aa12.69□□□□□ -0.38
VRK3-223ENST00000601341 GJB1P08034 283 aa12.69□□□□□ -0.38
VRK3-223ENST00000601341 HOXC8P31273 242 aa12.69□□□□□ -0.38
VRK3-223ENST00000601341 PHKA2P46019 1235 aa12.69□□□□□ -0.38
VRK3-223ENST00000601341 LIG4P49917 911 aa12.69□□□□□ -0.38
VRK3-223ENST00000601341 PTENP60484 403 aa12.69□□□□□ -0.38
VRK3-223ENST00000601341 MAPK8IP2Q13387 824 aaPredicted RBP12.69□□□□□ -0.38
VRK3-223ENST00000601341 MAPK6Q16659 721 aa12.69□□□□□ -0.38
VRK3-223ENST00000601341 ZNF572Q7Z3I7 529 aaPredicted RBP12.69□□□□□ -0.38
VRK3-223ENST00000601341 XXYLT1Q8NBI6 393 aa12.69□□□□□ -0.38
VRK3-223ENST00000601341 L1RE1Q9UN81 338 aa12.69□□□□□ -0.38
VRK3-223ENST00000601341 HTTP42858 3142 aa12.69□□□□□ -0.38
VRK3-223ENST00000601341 CEP350Q5VT06 3117 aa12.69□□□□□ -0.38
VRK3-223ENST00000601341 CENPFP49454 3210 aa12.69□□□□□ -0.38
VRK3-223ENST00000601341 TISP43B9A030 160 aa12.69□□□□□ -0.38
VRK3-223ENST00000601341 ANKRD63C9JTQ0 380 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms