RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 DNAJB1P25685 340 aa18.5■□□□□ 0.55
TRIM28-215ENST00000601150 PBX3P40426 434 aa18.5■□□□□ 0.55
TRIM28-215ENST00000601150 PLCB3Q01970 1234 aa18.5■□□□□ 0.55
TRIM28-215ENST00000601150 SKIV2LQ15477 1246 aaKnown RBP18.5■□□□□ 0.55
TRIM28-215ENST00000601150 E2F4Q16254 413 aa18.5■□□□□ 0.55
TRIM28-215ENST00000601150 RESP18Q5W5W9 173 aa18.5■□□□□ 0.55
TRIM28-215ENST00000601150 FAM178BQ8IXR5 827 aa18.5■□□□□ 0.55
TRIM28-215ENST00000601150 SLC39A11Q8N1S5 342 aa18.5■□□□□ 0.55
TRIM28-215ENST00000601150 IQUBQ8NA54 791 aa18.5■□□□□ 0.55
TRIM28-215ENST00000601150 DHX58Q96C10 678 aa18.5■□□□□ 0.55
TRIM28-215ENST00000601150 CHAMP1Q96JM3 812 aa18.5■□□□□ 0.55
TRIM28-215ENST00000601150 ZFP42Q96MM3 310 aa18.5■□□□□ 0.55
TRIM28-215ENST00000601150 FAM193BQ96PV7 902 aaPredicted RBP18.5■□□□□ 0.55
TRIM28-215ENST00000601150 NSUN3Q9H649 340 aaKnown RBP18.5■□□□□ 0.55
TRIM28-215ENST00000601150 PTPRHQ9HD43 1115 aa18.5■□□□□ 0.55
TRIM28-215ENST00000601150 LZTS1Q9Y250 596 aa18.5■□□□□ 0.55
TRIM28-215ENST00000601150 TRIP11Q15643 1979 aa18.5■□□□□ 0.55
TRIM28-215ENST00000601150 CITO14578 2027 aa18.49■□□□□ 0.55
TRIM28-215ENST00000601150 K7ENM7 598 aa18.49■□□□□ 0.55
TRIM28-215ENST00000601150 DDHD2O94830 711 aa18.49■□□□□ 0.55
TRIM28-215ENST00000601150 ABCD1P33897 745 aa18.49■□□□□ 0.55
TRIM28-215ENST00000601150 SCNN1GP51170 649 aa18.49■□□□□ 0.55
TRIM28-215ENST00000601150 KRT17Q04695 432 aa18.49■□□□□ 0.55
TRIM28-215ENST00000601150 CAMK1Q14012 370 aa18.49■□□□□ 0.55
TRIM28-215ENST00000601150 ZNF568Q3ZCX4 644 aa18.49■□□□□ 0.55
TRIM28-215ENST00000601150 ZPBP2Q6X784 338 aa18.49■□□□□ 0.55
TRIM28-215ENST00000601150 ZNF280BQ86YH2 543 aa18.49■□□□□ 0.55
TRIM28-215ENST00000601150 SLC17A8Q8NDX2 589 aa18.49■□□□□ 0.55
TRIM28-215ENST00000601150 MRPS27Q92552 414 aaKnown RBP18.49■□□□□ 0.55
TRIM28-215ENST00000601150 DNAJC19Q96DA6 116 aa18.49■□□□□ 0.55
TRIM28-215ENST00000601150 TCHPQ9BT92 498 aa18.49■□□□□ 0.55
TRIM28-215ENST00000601150 LRRC27Q9C0I9 530 aa18.49■□□□□ 0.55
TRIM28-215ENST00000601150 SCAND2PQ9GZW5 306 aaPredicted RBP18.49■□□□□ 0.55
TRIM28-215ENST00000601150 CDT1Q9H211 546 aa18.49■□□□□ 0.55
TRIM28-215ENST00000601150 TNMDQ9H2S6 317 aa18.49■□□□□ 0.55
TRIM28-215ENST00000601150 SNTG2Q9NY99 539 aa18.49■□□□□ 0.55
TRIM28-215ENST00000601150 KLK14Q9P0G3 267 aa18.49■□□□□ 0.55
TRIM28-215ENST00000601150 DNAJB4Q9UDY4 337 aa18.49■□□□□ 0.55
TRIM28-215ENST00000601150 PUF60Q9UHX1 559 aaKnown RBP18.49■□□□□ 0.55
TRIM28-215ENST00000601150 MYO7AQ13402 2215 aa18.48■□□□□ 0.55
TRIM28-215ENST00000601150 NT5C1B-RDH14C9J2C7 533 aa18.48■□□□□ 0.55
TRIM28-215ENST00000601150 RECQL4O94761 1208 aa18.48■□□□□ 0.55
TRIM28-215ENST00000601150 CSPG5O95196 566 aa18.48■□□□□ 0.55
TRIM28-215ENST00000601150 GALTP07902 379 aa18.48■□□□□ 0.55
TRIM28-215ENST00000601150 MCF2P10911 925 aa18.48■□□□□ 0.55
TRIM28-215ENST00000601150 GAP43P17677 238 aa18.48■□□□□ 0.55
TRIM28-215ENST00000601150 PROZP22891 400 aa18.48■□□□□ 0.55
TRIM28-215ENST00000601150 SLC11A1P49279 550 aa18.48■□□□□ 0.55
TRIM28-215ENST00000601150 TCEAL5Q5H9L2 206 aa18.48■□□□□ 0.55
TRIM28-215ENST00000601150 MPZL3Q6UWV2 235 aa18.48■□□□□ 0.55
TRIM28-215ENST00000601150 SFR1Q86XK3 245 aa18.48■□□□□ 0.55
TRIM28-215ENST00000601150 PHF6Q8IWS0 365 aaKnown RBP eCLIP18.48■□□□□ 0.551e-7■□□□□ 10.8
TRIM28-215ENST00000601150 RPS6KC1Q96S38 1066 aa18.48■□□□□ 0.55
TRIM28-215ENST00000601150 PYM1Q9BRP8 204 aaKnown RBP18.48■□□□□ 0.55
TRIM28-215ENST00000601150 TMEM175Q9BSA9 504 aa18.48■□□□□ 0.55
TRIM28-215ENST00000601150 PRDM6Q9NQX0 595 aa18.48■□□□□ 0.55
TRIM28-215ENST00000601150 TLR9Q9NR96 1032 aa18.48■□□□□ 0.55
TRIM28-215ENST00000601150 KBTBD4Q9NVX7 518 aa18.48■□□□□ 0.55
TRIM28-215ENST00000601150 MIOSQ9NXC5 875 aa18.48■□□□□ 0.55
TRIM28-215ENST00000601150 SEL1LQ9UBV2 794 aa18.48■□□□□ 0.55
TRIM28-215ENST00000601150 TBX20Q9UMR3 447 aa18.48■□□□□ 0.55
TRIM28-215ENST00000601150 POLR2DO15514 142 aaKnown RBP18.47■□□□□ 0.55
TRIM28-215ENST00000601150 B4GALT3O60512 393 aa18.47■□□□□ 0.55
TRIM28-215ENST00000601150 TOM1L1O75674 476 aa18.47■□□□□ 0.55
TRIM28-215ENST00000601150 ALDH2P05091 517 aa18.47■□□□□ 0.55
TRIM28-215ENST00000601150 IDEP14735 1019 aa18.47■□□□□ 0.55
TRIM28-215ENST00000601150 NMT1P30419 496 aaKnown RBP18.47■□□□□ 0.55
TRIM28-215ENST00000601150 GRM5P41594 1212 aa18.47■□□□□ 0.55
TRIM28-215ENST00000601150 AMPD3Q01432 767 aa18.47■□□□□ 0.55
TRIM28-215ENST00000601150 GRIK3Q13003 919 aa18.47■□□□□ 0.55
TRIM28-215ENST00000601150 ADALQ6DHV7 355 aa18.47■□□□□ 0.55
TRIM28-215ENST00000601150 PDE12Q6L8Q7 609 aaKnown RBP18.47■□□□□ 0.55
TRIM28-215ENST00000601150 ZBTB33Q86T24 672 aa18.47■□□□□ 0.55
TRIM28-215ENST00000601150 GSTCDQ8NEC7 633 aa18.47■□□□□ 0.55
TRIM28-215ENST00000601150 BICD1Q96G01 975 aa18.47■□□□□ 0.55
TRIM28-215ENST00000601150 TMEM169Q96HH4 297 aa18.47■□□□□ 0.55
TRIM28-215ENST00000601150 FIZ1Q96SL8 496 aa18.47■□□□□ 0.55
TRIM28-215ENST00000601150 CCDC94Q9BW85 323 aaPredicted RBP18.47■□□□□ 0.55
TRIM28-215ENST00000601150 ST6GALNAC4Q9H4F1 302 aa18.47■□□□□ 0.55
TRIM28-215ENST00000601150 MAGEF1Q9HAY2 307 aa18.47■□□□□ 0.55
TRIM28-215ENST00000601150 THEGQ9P2T0 379 aa18.47■□□□□ 0.55
TRIM28-215ENST00000601150 GDAQ9Y2T3 454 aa18.47■□□□□ 0.55
TRIM28-215ENST00000601150 REV3LO60673 3130 aa18.46■□□□□ 0.55
TRIM28-215ENST00000601150 EYSQ5T1H1 3165 aa18.46■□□□□ 0.55
TRIM28-215ENST00000601150 ABLIM1O14639 778 aa18.46■□□□□ 0.55
TRIM28-215ENST00000601150 IRS1P35568 1242 aa18.46■□□□□ 0.55
TRIM28-215ENST00000601150 GTF2BQ00403 316 aa18.46■□□□□ 0.55
TRIM28-215ENST00000601150 DSC1Q08554 894 aa18.46■□□□□ 0.55
TRIM28-215ENST00000601150 COLGALT2Q8IYK4 626 aa18.46■□□□□ 0.55
TRIM28-215ENST00000601150 MICAL1Q8TDZ2 1067 aa18.46■□□□□ 0.55
TRIM28-215ENST00000601150 STAMQ92783 540 aa18.46■□□□□ 0.55
TRIM28-215ENST00000601150 PPP2R3CQ969Q6 453 aa18.46■□□□□ 0.55
TRIM28-215ENST00000601150 IGSF21Q96ID5 467 aa18.46■□□□□ 0.55
TRIM28-215ENST00000601150 ZBTB45Q96K62 511 aaPredicted RBP18.46■□□□□ 0.55
TRIM28-215ENST00000601150 PANK4Q9NVE7 773 aa18.46■□□□□ 0.55
TRIM28-215ENST00000601150 ANKFY1Q9P2R3 1169 aa18.46■□□□□ 0.55
TRIM28-215ENST00000601150 KCNH3Q9ULD8 1083 aa18.46■□□□□ 0.55
TRIM28-215ENST00000601150 COG5Q9UP83 839 aa18.46■□□□□ 0.55
TRIM28-215ENST00000601150 FAN1Q9Y2M0 1017 aa18.46■□□□□ 0.55
TRIM28-215ENST00000601150 PDCD11Q14690 1871 aaKnown RBP18.46■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms