RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 UBALD2Q8IYN6 164 aa19.49■□□□□ 0.71
SHKBP1-223ENST00000600552 ACSF2Q96CM8 615 aaPredicted RBP19.49■□□□□ 0.71
SHKBP1-223ENST00000600552 RPS6KC1Q96S38 1066 aa19.49■□□□□ 0.71
SHKBP1-223ENST00000600552 CACNG4Q9UBN1 327 aa19.49■□□□□ 0.71
SHKBP1-223ENST00000600552 STK39Q9UEW8 545 aa19.49■□□□□ 0.71
SHKBP1-223ENST00000600552 USP20Q9Y2K6 914 aa19.49■□□□□ 0.71
SHKBP1-223ENST00000600552 WDFY4Q6ZS81 3184 aa19.48■□□□□ 0.71
SHKBP1-223ENST00000600552 TEX28O15482 410 aa19.48■□□□□ 0.71
SHKBP1-223ENST00000600552 LILRB3O75022 631 aa19.48■□□□□ 0.71
SHKBP1-223ENST00000600552 ADH1AP07327 375 aa19.48■□□□□ 0.71
SHKBP1-223ENST00000600552 SPATA31C1P0DKV0 1188 aa19.48■□□□□ 0.71
SHKBP1-223ENST00000600552 SLC27A1Q6PCB7 646 aa19.48■□□□□ 0.71
SHKBP1-223ENST00000600552 POTEGQ6S5H5 508 aa19.48■□□□□ 0.71
SHKBP1-223ENST00000600552 CCDC149Q6ZUS6 474 aa19.48■□□□□ 0.71
SHKBP1-223ENST00000600552 ZBTB8OSQ8IWT0 167 aa19.48■□□□□ 0.71
SHKBP1-223ENST00000600552 PLCD3Q8N3E9 789 aa19.48■□□□□ 0.71
SHKBP1-223ENST00000600552 MFSD1Q9H3U5 465 aa19.48■□□□□ 0.71
SHKBP1-223ENST00000600552 SSX2IPQ9Y2D8 614 aa19.48■□□□□ 0.71
SHKBP1-223ENST00000600552 GIT1Q9Y2X7 761 aa19.48■□□□□ 0.71
SHKBP1-223ENST00000600552 CCDC195A0A1B0GUA6 201 aa19.47■□□□□ 0.71
SHKBP1-223ENST00000600552 TADA2AO75478 443 aa19.47■□□□□ 0.71
SHKBP1-223ENST00000600552 POU5F1BQ06416 359 aa19.47■□□□□ 0.71
SHKBP1-223ENST00000600552 TCF15Q12870 199 aa19.47■□□□□ 0.71
SHKBP1-223ENST00000600552 OTOP3Q7RTS5 596 aa19.47■□□□□ 0.71
SHKBP1-223ENST00000600552 IFNLR1Q8IU57 520 aaPredicted RBP19.47■□□□□ 0.71
SHKBP1-223ENST00000600552 ZDHHC14Q8IZN3 488 aa19.47■□□□□ 0.71
SHKBP1-223ENST00000600552 ERMNQ8TAM6 284 aa19.47■□□□□ 0.71
SHKBP1-223ENST00000600552 ATOH1Q92858 354 aaPredicted RBP19.47■□□□□ 0.71
SHKBP1-223ENST00000600552 NACC1Q96RE7 527 aa19.47■□□□□ 0.71
SHKBP1-223ENST00000600552 PRRX2Q99811 253 aa19.47■□□□□ 0.71
SHKBP1-223ENST00000600552 TUFT1Q9NNX1 390 aa19.47■□□□□ 0.71
SHKBP1-223ENST00000600552 LIMCH1Q9UPQ0 1083 aa19.47■□□□□ 0.71
SHKBP1-223ENST00000600552 KMT2EQ8IZD2 1858 aa19.47■□□□□ 0.71
SHKBP1-223ENST00000600552 ARHGEF35A5YM69 484 aa19.46■□□□□ 0.71
SHKBP1-223ENST00000600552 GLUD1P00367 558 aa19.46■□□□□ 0.71
SHKBP1-223ENST00000600552 OR52Z1P0C646 297 aa19.46■□□□□ 0.71
SHKBP1-223ENST00000600552 XRCC6P12956 609 aaKnown RBP eCLIP19.46■□□□□ 0.71
SHKBP1-223ENST00000600552 RPL17P18621 184 aaKnown RBP19.46■□□□□ 0.71
SHKBP1-223ENST00000600552 GBP2P32456 591 aaPredicted RBP19.46■□□□□ 0.71
SHKBP1-223ENST00000600552 DSC1Q08554 894 aa19.46■□□□□ 0.71
SHKBP1-223ENST00000600552 KIAA0319Q5VV43 1072 aa19.46■□□□□ 0.71
SHKBP1-223ENST00000600552 PADI6Q6TGC4 694 aa19.46■□□□□ 0.71
SHKBP1-223ENST00000600552 MCPH1Q8NEM0 835 aa19.46■□□□□ 0.71
SHKBP1-223ENST00000600552 HASPINQ8TF76 798 aa19.46■□□□□ 0.71
SHKBP1-223ENST00000600552 RIN2Q8WYP3 895 aaPredicted RBP19.46■□□□□ 0.71
SHKBP1-223ENST00000600552 GPR62Q9BZJ7 368 aa19.46■□□□□ 0.71
SHKBP1-223ENST00000600552 PIDD1Q9HB75 910 aa19.46■□□□□ 0.71
SHKBP1-223ENST00000600552 PRMT7Q9NVM4 692 aaPredicted RBP19.46■□□□□ 0.71
SHKBP1-223ENST00000600552 PLXNA3P51805 1871 aa19.45■□□□□ 0.7
SHKBP1-223ENST00000600552 C2orf16Q68DN1 1984 aa19.45■□□□□ 0.7
SHKBP1-223ENST00000600552 A0A1B0GUA9 196 aa19.45■□□□□ 0.7
SHKBP1-223ENST00000600552 TTLL13PA6NNM8 815 aa19.45■□□□□ 0.7
SHKBP1-223ENST00000600552 H0Y858 1186 aa19.45■□□□□ 0.7
SHKBP1-223ENST00000600552 INPPL1O15357 1258 aa19.45■□□□□ 0.7
SHKBP1-223ENST00000600552 EIF5BO60841 1220 aaKnown RBP19.45■□□□□ 0.7
SHKBP1-223ENST00000600552 RFPL2O75678 378 aa19.45■□□□□ 0.7
SHKBP1-223ENST00000600552 TTC38Q5R3I4 469 aa19.45■□□□□ 0.7
SHKBP1-223ENST00000600552 FUT10Q6P4F1 479 aa19.45■□□□□ 0.7
SHKBP1-223ENST00000600552 ELMSAN1Q6PJG2 1045 aa19.45■□□□□ 0.7
SHKBP1-223ENST00000600552 FAM184AQ8NB25 1140 aa19.45■□□□□ 0.7
SHKBP1-223ENST00000600552 FLCNQ8NFG4 579 aa19.45■□□□□ 0.7
SHKBP1-223ENST00000600552 DEPTORQ8TB45 409 aa19.45■□□□□ 0.7
SHKBP1-223ENST00000600552 BSNDQ8WZ55 320 aa19.45■□□□□ 0.7
SHKBP1-223ENST00000600552 SNTG2Q9NY99 539 aa19.45■□□□□ 0.7
SHKBP1-223ENST00000600552 USTQ9Y2C2 406 aa19.45■□□□□ 0.7
SHKBP1-223ENST00000600552 CASTOR2A6NHX0 329 aa19.44■□□□□ 0.7
SHKBP1-223ENST00000600552 CCT6AP40227 531 aaKnown RBP19.44■□□□□ 0.7
SHKBP1-223ENST00000600552 PRPF4BQ13523 1007 aaKnown RBP19.44■□□□□ 0.7
SHKBP1-223ENST00000600552 NBR1Q14596 966 aa19.44■□□□□ 0.7
SHKBP1-223ENST00000600552 USP41Q3LFD5 358 aa19.44■□□□□ 0.7
SHKBP1-223ENST00000600552 CEP57Q86XR8 500 aa19.44■□□□□ 0.7
SHKBP1-223ENST00000600552 NOSTRINQ8IVI9 506 aa19.44■□□□□ 0.7
SHKBP1-223ENST00000600552 GSTCDQ8NEC7 633 aa19.44■□□□□ 0.7
SHKBP1-223ENST00000600552 SMG7Q92540 1137 aaKnown RBP19.44■□□□□ 0.7
SHKBP1-223ENST00000600552 POLR3CQ9BUI4 534 aaPredicted RBP19.44■□□□□ 0.7
SHKBP1-223ENST00000600552 NFKBIZQ9BYH8 718 aa19.44■□□□□ 0.7
SHKBP1-223ENST00000600552 ADAM28Q9UKQ2 775 aa19.44■□□□□ 0.7
SHKBP1-223ENST00000600552 FBXL21Q9UKT6 434 aa19.44■□□□□ 0.7
SHKBP1-223ENST00000600552 PRKCBP05771 671 aa19.43■□□□□ 0.7
SHKBP1-223ENST00000600552 DSG1Q02413 1049 aa19.43■□□□□ 0.7
SHKBP1-223ENST00000600552 GRIK3Q13003 919 aa19.43■□□□□ 0.7
SHKBP1-223ENST00000600552 PRSS55Q6UWB4 352 aaPredicted RBP19.43■□□□□ 0.7
SHKBP1-223ENST00000600552 PAAF1Q9BRP4 392 aa19.43■□□□□ 0.7
SHKBP1-223ENST00000600552 KIFC3Q9BVG8 833 aa19.43■□□□□ 0.7
SHKBP1-223ENST00000600552 GDAQ9Y2T3 454 aa19.43■□□□□ 0.7
SHKBP1-223ENST00000600552 STK25O00506 426 aa19.42■□□□□ 0.7
SHKBP1-223ENST00000600552 N4BP3O15049 544 aa19.42■□□□□ 0.7
SHKBP1-223ENST00000600552 CYP11B2P19099 503 aa19.42■□□□□ 0.7
SHKBP1-223ENST00000600552 TDGQ13569 410 aa19.42■□□□□ 0.7
SHKBP1-223ENST00000600552 HSP90AA2PQ14568 343 aaPredicted RBP19.42■□□□□ 0.7
SHKBP1-223ENST00000600552 MAPK6Q16659 721 aa19.42■□□□□ 0.7
SHKBP1-223ENST00000600552 TMEM105Q8N8V8 129 aa19.42■□□□□ 0.7
SHKBP1-223ENST00000600552 ST13P5Q8NFI4 369 aaPredicted RBP19.42■□□□□ 0.7
SHKBP1-223ENST00000600552 C2orf40Q9H1Z8 148 aa19.42■□□□□ 0.7
SHKBP1-223ENST00000600552 CXCL16Q9H2A7 254 aa19.42■□□□□ 0.7
SHKBP1-223ENST00000600552 FOXP1Q9H334 677 aaPredicted RBP19.42■□□□□ 0.7
SHKBP1-223ENST00000600552 FZD8Q9H461 694 aa19.42■□□□□ 0.7
SHKBP1-223ENST00000600552 PDZD7Q9H5P4 517 aa19.42■□□□□ 0.7
SHKBP1-223ENST00000600552 KCNK12Q9HB15 430 aa19.42■□□□□ 0.7
SHKBP1-223ENST00000600552 RXFP1Q9HBX9 757 aa19.42■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms