RNA–Protein interactions for RNA: ENST00000590181.5

LIG3-212, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,156 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-212ENST00000590181 LONP1P36776 959 aaKnown RBP11.59□□□□□ -0.55
LIG3-212ENST00000590181 SMTNP53814 917 aa11.59□□□□□ -0.55
LIG3-212ENST00000590181 BCAR1P56945 870 aa11.59□□□□□ -0.55
LIG3-212ENST00000590181 DUSP6Q16828 381 aa11.59□□□□□ -0.55
LIG3-212ENST00000590181 PLPP4Q5VZY2 271 aa11.59□□□□□ -0.55
LIG3-212ENST00000590181 LRRC55Q6ZSA7 311 aa11.59□□□□□ -0.55
LIG3-212ENST00000590181 MRPL43Q8N983 215 aaKnown RBP11.59□□□□□ -0.55
LIG3-212ENST00000590181 DEPTORQ8TB45 409 aa11.59□□□□□ -0.55
LIG3-212ENST00000590181 SNX29Q8TEQ0 813 aa11.59□□□□□ -0.55
LIG3-212ENST00000590181 KCNN1Q92952 543 aa11.59□□□□□ -0.55
LIG3-212ENST00000590181 CDK5RAP3Q96JB5 506 aa11.59□□□□□ -0.55
LIG3-212ENST00000590181 APOL5Q9BWW9 433 aa11.59□□□□□ -0.55
LIG3-212ENST00000590181 BHMT2Q9H2M3 363 aa11.59□□□□□ -0.55
LIG3-212ENST00000590181 ZSCAN16Q9H4T2 348 aaPredicted RBP11.59□□□□□ -0.55
LIG3-212ENST00000590181 TMEM134Q9H6X4 195 aa11.59□□□□□ -0.55
LIG3-212ENST00000590181 TBC1D13Q9NVG8 400 aa11.59□□□□□ -0.55
LIG3-212ENST00000590181 HCSTQ9UBK5 93 aa11.59□□□□□ -0.55
LIG3-212ENST00000590181 DCHS1Q96JQ0 3298 aa11.59□□□□□ -0.55
LIG3-212ENST00000590181 ARF4P18085 180 aaPredicted RBP11.58□□□□□ -0.56
LIG3-212ENST00000590181 GUCY2CP25092 1073 aa11.58□□□□□ -0.56
LIG3-212ENST00000590181 CREMQ03060 361 aa11.58□□□□□ -0.56
LIG3-212ENST00000590181 PRPF4BQ13523 1007 aaKnown RBP11.58□□□□□ -0.56
LIG3-212ENST00000590181 AMHR2Q16671 573 aa11.58□□□□□ -0.56
LIG3-212ENST00000590181 DCAF4L1Q3SXM0 396 aa11.58□□□□□ -0.56
LIG3-212ENST00000590181 LLGL2Q6P1M3 1020 aa11.58□□□□□ -0.56
LIG3-212ENST00000590181 POTEGQ6S5H5 508 aa11.58□□□□□ -0.56
LIG3-212ENST00000590181 AGMOQ6ZNB7 445 aa11.58□□□□□ -0.56
LIG3-212ENST00000590181 TMC7Q7Z402 723 aa11.58□□□□□ -0.56
LIG3-212ENST00000590181 TMEM87AQ8NBN3 555 aa11.58□□□□□ -0.56
LIG3-212ENST00000590181 CASP10Q92851 521 aa11.58□□□□□ -0.56
LIG3-212ENST00000590181 SNX21Q969T3 373 aa11.58□□□□□ -0.56
LIG3-212ENST00000590181 CALML4Q96GE6 196 aa11.58□□□□□ -0.56
LIG3-212ENST00000590181 IGSF21Q96ID5 467 aa11.58□□□□□ -0.56
LIG3-212ENST00000590181 ZNF668Q96K58 619 aaPredicted RBP11.58□□□□□ -0.56
LIG3-212ENST00000590181 ENTPD7Q9NQZ7 604 aa11.58□□□□□ -0.56
LIG3-212ENST00000590181 TSHZ2Q9NRE2 1034 aa11.58□□□□□ -0.56
LIG3-212ENST00000590181 DDX19AQ9NUU7 478 aaKnown RBP11.58□□□□□ -0.56
LIG3-212ENST00000590181 FAN1Q9Y2M0 1017 aa11.58□□□□□ -0.56
LIG3-212ENST00000590181 IPPQ9Y573 584 aa11.58□□□□□ -0.56
LIG3-212ENST00000590181 TDRD15B5MCY1 1934 aaKnown RBP11.58□□□□□ -0.56
LIG3-212ENST00000590181 MYH11P35749 1972 aa11.58□□□□□ -0.56
LIG3-212ENST00000590181 FRYLO94915 3013 aa11.57□□□□□ -0.56
LIG3-212ENST00000590181 PRR23AA6NEV1 266 aa11.57□□□□□ -0.56
LIG3-212ENST00000590181 ARL5CA6NH57 179 aa11.57□□□□□ -0.56
LIG3-212ENST00000590181 K7ERI5 159 aa11.57□□□□□ -0.56
LIG3-212ENST00000590181 GALR2O43603 387 aaPredicted RBP11.57□□□□□ -0.56
LIG3-212ENST00000590181 DTNBO60941 627 aa11.57□□□□□ -0.56
LIG3-212ENST00000590181 GALTP07902 379 aa11.57□□□□□ -0.56
LIG3-212ENST00000590181 CTSAP10619 480 aa11.57□□□□□ -0.56
LIG3-212ENST00000590181 UBA7P41226 1012 aa11.57□□□□□ -0.56
LIG3-212ENST00000590181 ERVFC1P60507 584 aa11.57□□□□□ -0.56
LIG3-212ENST00000590181 FOXK2Q01167 660 aa11.57□□□□□ -0.56
LIG3-212ENST00000590181 ITIH3Q06033 890 aa11.57□□□□□ -0.56
LIG3-212ENST00000590181 DMP1Q13316 513 aaPredicted RBP11.57□□□□□ -0.56
LIG3-212ENST00000590181 MTMR3Q13615 1198 aa11.57□□□□□ -0.56
LIG3-212ENST00000590181 TPRNQ4KMQ1 711 aa11.57□□□□□ -0.56
LIG3-212ENST00000590181 UBXN11Q5T124 520 aa11.57□□□□□ -0.56
LIG3-212ENST00000590181 ANKRD54Q6NXT1 300 aa11.57□□□□□ -0.56
LIG3-212ENST00000590181 CYP26C1Q6V0L0 522 aa11.57□□□□□ -0.56
LIG3-212ENST00000590181 ASCL5Q7RTU5 278 aa11.57□□□□□ -0.56
LIG3-212ENST00000590181 SYT2Q8N9I0 419 aaPredicted RBP11.57□□□□□ -0.56
LIG3-212ENST00000590181 ASAP3Q8TDY4 903 aa11.57□□□□□ -0.56
LIG3-212ENST00000590181 SPIRE2Q8WWL2 714 aa11.57□□□□□ -0.56
LIG3-212ENST00000590181 TCF25Q9BQ70 676 aa11.57□□□□□ -0.56
LIG3-212ENST00000590181 COLEC11Q9BWP8 271 aa11.57□□□□□ -0.56
LIG3-212ENST00000590181 NRDE2Q9H7Z3 1164 aa11.57□□□□□ -0.56
LIG3-212ENST00000590181 DZANK1Q9NVP4 752 aa11.57□□□□□ -0.56
LIG3-212ENST00000590181 PROB1E7EW31 1015 aa11.56□□□□□ -0.56
LIG3-212ENST00000590181 ZC3H11AO75152 810 aaKnown RBP eCLIP11.56□□□□□ -0.56
LIG3-212ENST00000590181 CD2BP2O95400 341 aaKnown RBP11.56□□□□□ -0.56
LIG3-212ENST00000590181 NUBP1P53384 320 aa11.56□□□□□ -0.56
LIG3-212ENST00000590181 ELAVL2Q12926 359 aaKnown RBP11.56□□□□□ -0.56
LIG3-212ENST00000590181 GRIK3Q13003 919 aa11.56□□□□□ -0.56
LIG3-212ENST00000590181 KCNC3Q14003 757 aa11.56□□□□□ -0.56
LIG3-212ENST00000590181 KYAT1Q16773 422 aa11.56□□□□□ -0.56
LIG3-212ENST00000590181 TMEM132AQ24JP5 1023 aa11.56□□□□□ -0.56
LIG3-212ENST00000590181 PDXDC1Q6P996 788 aa11.56□□□□□ -0.56
LIG3-212ENST00000590181 C1orf186Q6ZWK4 172 aa11.56□□□□□ -0.56
LIG3-212ENST00000590181 KREMEN2Q8NCW0 462 aa11.56□□□□□ -0.56
LIG3-212ENST00000590181 SMG8Q8ND04 991 aaKnown RBP11.56□□□□□ -0.56
LIG3-212ENST00000590181 RIPOR3Q96MK2 946 aa11.56□□□□□ -0.56
LIG3-212ENST00000590181 NECTIN4Q96NY8 510 aa11.56□□□□□ -0.56
LIG3-212ENST00000590181 TSPAN18Q96SJ8 248 aa11.56□□□□□ -0.56
LIG3-212ENST00000590181 EMILIN2Q9BXX0 1053 aa11.56□□□□□ -0.56
LIG3-212ENST00000590181 CCDC113Q9H0I3 377 aa11.56□□□□□ -0.56
LIG3-212ENST00000590181 LARSQ9P2J5 1176 aaKnown RBP11.56□□□□□ -0.56
LIG3-212ENST00000590181 CDH22Q9UJ99 828 aa11.56□□□□□ -0.56
LIG3-212ENST00000590181 ODF2LQ9ULJ1 636 aa11.56□□□□□ -0.56
LIG3-212ENST00000590181 NR2E1Q9Y466 385 aa11.56□□□□□ -0.56
LIG3-212ENST00000590181 MYO10Q9HD67 2058 aa11.56□□□□□ -0.56
LIG3-212ENST00000590181 C2orf16Q68DN1 1984 aa11.56□□□□□ -0.56
LIG3-212ENST00000590181 PTPRZ1P23471 2315 aaPredicted RBP11.55□□□□□ -0.56
LIG3-212ENST00000590181 VWA3AA6NCI4 1184 aa11.55□□□□□ -0.56
LIG3-212ENST00000590181 C2orf71A6NGG8 1288 aa11.55□□□□□ -0.56
LIG3-212ENST00000590181 K7ELQ4 463 aaPredicted RBP11.55□□□□□ -0.56
LIG3-212ENST00000590181 CXCL14O95715 111 aa11.55□□□□□ -0.56
LIG3-212ENST00000590181 PRKCBP05771 671 aa11.55□□□□□ -0.56
LIG3-212ENST00000590181 DSC1Q08554 894 aa11.55□□□□□ -0.56
LIG3-212ENST00000590181 STRN3Q13033 797 aa11.55□□□□□ -0.56
LIG3-212ENST00000590181 RINT1Q6NUQ1 792 aa11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms