RNA–Protein interactions for RNA: ENST00000583595.1

SS18-223, Transcript of SS18, nBAF chromatin remodeling complex subunit, human

TSL 3

Gene SS18, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SS18-223	ENST00000583595	KCNC2	Q96PR1	638 aa		5.84	□□□□□ -1.47
SS18-223	ENST00000583595	C22orf23	Q9BZE7	217 aa		5.84	□□□□□ -1.47
SS18-223	ENST00000583595	RXFP1	Q9HBX9	757 aa		5.84	□□□□□ -1.47
SS18-223	ENST00000583595	AGO4	Q9HCK5	861 aa	Known RBP	5.84	□□□□□ -1.47
SS18-223	ENST00000583595	IGF2BP1	Q9NZI8	577 aa	Known RBP eCLIP	5.84	□□□□□ -1.47
SS18-223	ENST00000583595	STAP2	Q9UGK3	403 aa		5.84	□□□□□ -1.47
SS18-223	ENST00000583595	TPCN1	Q9ULQ1	816 aa		5.84	□□□□□ -1.47
SS18-223	ENST00000583595	PLA2G2D	Q9UNK4	145 aa		5.84	□□□□□ -1.47
SS18-223	ENST00000583595	PCDHA13	Q9Y5I0	950 aa		5.84	□□□□□ -1.47
SS18-223	ENST00000583595	NUMBL	Q9Y6R0	609 aa		5.84	□□□□□ -1.47
SS18-223	ENST00000583595	UNC13A	Q9UPW8	1703 aa		5.83	□□□□□ -1.48
SS18-223	ENST00000583595		A0A088AWK7	358 aa		5.83	□□□□□ -1.48
SS18-223	ENST00000583595	KRTAP9-7	A8MTY7	169 aa		5.83	□□□□□ -1.48
SS18-223	ENST00000583595	GOLGA6L22	H0YM25	854 aa		5.83	□□□□□ -1.48
SS18-223	ENST00000583595		M0R3H8	397 aa		5.83	□□□□□ -1.48
SS18-223	ENST00000583595	ACOT7	O00154	380 aa		5.83	□□□□□ -1.48
SS18-223	ENST00000583595	EPB41L2	O43491	1005 aa	Known RBP	5.83	□□□□□ -1.48
SS18-223	ENST00000583595	RHOBTB3	O94955	611 aa		5.83	□□□□□ -1.48
SS18-223	ENST00000583595	NTRK1	P04629	796 aa		5.83	□□□□□ -1.48
SS18-223	ENST00000583595	HSD3B1	P14060	373 aa		5.83	□□□□□ -1.48
SS18-223	ENST00000583595	FBLN1	P23142	703 aa		5.83	□□□□□ -1.48
SS18-223	ENST00000583595	STT3A	P46977	705 aa		5.83	□□□□□ -1.48
SS18-223	ENST00000583595	MAPK10	P53779	464 aa		5.83	□□□□□ -1.48
SS18-223	ENST00000583595	EPHA5	P54756	1037 aa		5.83	□□□□□ -1.48
SS18-223	ENST00000583595	GRIN1	Q05586	938 aa		5.83	□□□□□ -1.48
SS18-223	ENST00000583595	POLD3	Q15054	466 aa	Predicted RBP	5.83	□□□□□ -1.48
SS18-223	ENST00000583595	CCDC157	Q569K6	752 aa		5.83	□□□□□ -1.48
SS18-223	ENST00000583595	STEAP3	Q658P3	488 aa		5.83	□□□□□ -1.48
SS18-223	ENST00000583595	TIGD7	Q6NT04	549 aa	Predicted RBP	5.83	□□□□□ -1.48
SS18-223	ENST00000583595	HIBCH	Q6NVY1	386 aa	Predicted RBP	5.83	□□□□□ -1.48
SS18-223	ENST00000583595	MAATS1	Q7Z4T9	603 aa		5.83	□□□□□ -1.48
SS18-223	ENST00000583595	RTN4RL1	Q86UN2	441 aa	Predicted RBP	5.83	□□□□□ -1.48
SS18-223	ENST00000583595	LIX1L	Q8IVB5	337 aa		5.83	□□□□□ -1.48
SS18-223	ENST00000583595	PDILT	Q8N807	584 aa		5.83	□□□□□ -1.48
SS18-223	ENST00000583595	ASB15	Q8WXK1	588 aa		5.83	□□□□□ -1.48
SS18-223	ENST00000583595	YTHDC1	Q96MU7	727 aa	Known RBP	5.83	□□□□□ -1.48
SS18-223	ENST00000583595	KRTAP4-11	Q9BYQ6	195 aa		5.83	□□□□□ -1.48
SS18-223	ENST00000583595	ZMAT3	Q9HA38	289 aa	Known RBP	5.83	□□□□□ -1.48
SS18-223	ENST00000583595	RRN3	Q9NYV6	651 aa		5.83	□□□□□ -1.48
SS18-223	ENST00000583595	PGAP2	Q9UHJ9	254 aa		5.83	□□□□□ -1.48
SS18-223	ENST00000583595	PRSS50	Q9UI38	385 aa		5.83	□□□□□ -1.48
SS18-223	ENST00000583595	STXBP5L	Q9Y2K9	1186 aa		5.83	□□□□□ -1.48
SS18-223	ENST00000583595	FANCI	Q9NVI1	1328 aa		5.82	□□□□□ -1.48
SS18-223	ENST00000583595	UBA6	A0AVT1	1052 aa	Predicted RBP	5.82	□□□□□ -1.48
SS18-223	ENST00000583595	PRAMEF22	A3QJZ6	481 aa		5.82	□□□□□ -1.48
SS18-223	ENST00000583595	POM121B	A6NF01	834 aa		5.82	□□□□□ -1.48
SS18-223	ENST00000583595	TADA3	O75528	432 aa		5.82	□□□□□ -1.48
SS18-223	ENST00000583595	HSP90AA1	P07900	732 aa	Known RBP	5.82	□□□□□ -1.48
SS18-223	ENST00000583595	CTSW	P56202	376 aa		5.82	□□□□□ -1.48
SS18-223	ENST00000583595	KCTD2	Q14681	263 aa		5.82	□□□□□ -1.48
SS18-223	ENST00000583595	MYBPC3	Q14896	1274 aa		5.82	□□□□□ -1.48
SS18-223	ENST00000583595	TTC38	Q5R3I4	469 aa		5.82	□□□□□ -1.48
SS18-223	ENST00000583595	L1TD1	Q5T7N2	865 aa	Known RBP	5.82	□□□□□ -1.48
SS18-223	ENST00000583595	MROH9	Q5TGP6	573 aa		5.82	□□□□□ -1.48
SS18-223	ENST00000583595	PRAMEF18	Q5VWM3	479 aa		5.82	□□□□□ -1.48
SS18-223	ENST00000583595	PNPLA5	Q7Z6Z6	429 aa	Predicted RBP	5.82	□□□□□ -1.48
SS18-223	ENST00000583595	IL17RE	Q8NFR9	667 aa		5.82	□□□□□ -1.48
SS18-223	ENST00000583595	NSUN6	Q8TEA1	469 aa	Known RBP	5.82	□□□□□ -1.48
SS18-223	ENST00000583595	ARL8A	Q96BM9	186 aa		5.82	□□□□□ -1.48
SS18-223	ENST00000583595	C20orf173	Q96LM9	149 aa		5.82	□□□□□ -1.48
SS18-223	ENST00000583595	TBATA	Q96M53	351 aa		5.82	□□□□□ -1.48
SS18-223	ENST00000583595	ISCA1	Q9BUE6	129 aa		5.82	□□□□□ -1.48
SS18-223	ENST00000583595	KIAA1586	Q9HCI6	787 aa		5.82	□□□□□ -1.48
SS18-223	ENST00000583595	ITM2C	Q9NQX7	267 aa		5.82	□□□□□ -1.48
SS18-223	ENST00000583595	USP18	Q9UMW8	372 aa		5.82	□□□□□ -1.48
SS18-223	ENST00000583595	PCDHB1	Q9Y5F3	818 aa		5.82	□□□□□ -1.48
SS18-223	ENST00000583595	MYPN	Q86TC9	1320 aa		5.81	□□□□□ -1.48
SS18-223	ENST00000583595	LRRC14B	A6NHZ5	514 aa		5.81	□□□□□ -1.48
SS18-223	ENST00000583595		F8W8V4	182 aa		5.81	□□□□□ -1.48
SS18-223	ENST00000583595	hCG_1984214	I3L0E3	225 aa		5.81	□□□□□ -1.48
SS18-223	ENST00000583595	DDX3X	O00571	662 aa	Known RBP eCLIP	5.81	□□□□□ -1.48
SS18-223	ENST00000583595	SASH1	O94885	1247 aa		5.81	□□□□□ -1.48
SS18-223	ENST00000583595	PCDH8	O95206	1070 aa		5.81	□□□□□ -1.48
SS18-223	ENST00000583595	FTL	P02792	175 aa	Predicted RBP	5.81	□□□□□ -1.48
SS18-223	ENST00000583595	CELA3B	P08861	270 aa		5.81	□□□□□ -1.48
SS18-223	ENST00000583595	NCAM1	P13591	858 aa		5.81	□□□□□ -1.48
SS18-223	ENST00000583595	ATF2	P15336	505 aa		5.81	□□□□□ -1.48
SS18-223	ENST00000583595	SMARCA1	P28370	1054 aa		5.81	□□□□□ -1.48
SS18-223	ENST00000583595	CASP2	P42575	452 aa		5.81	□□□□□ -1.48
SS18-223	ENST00000583595	TEC	P42680	631 aa		5.81	□□□□□ -1.48
SS18-223	ENST00000583595	GPSM2	P81274	684 aa		5.81	□□□□□ -1.48
SS18-223	ENST00000583595	SLC6A3	Q01959	620 aa		5.81	□□□□□ -1.48
SS18-223	ENST00000583595	ADCY2	Q08462	1091 aa		5.81	□□□□□ -1.48
SS18-223	ENST00000583595	PPFIA1	Q13136	1202 aa		5.81	□□□□□ -1.48
SS18-223	ENST00000583595	DACT2	Q5SW24	774 aa		5.81	□□□□□ -1.48
SS18-223	ENST00000583595	PPP4R3A	Q6IN85	833 aa		5.81	□□□□□ -1.48
SS18-223	ENST00000583595	PDZD4	Q76G19	769 aa	Predicted RBP	5.81	□□□□□ -1.48
SS18-223	ENST00000583595	RIOX2	Q8IUF8	465 aa		5.81	□□□□□ -1.48
SS18-223	ENST00000583595	SUGP1	Q8IWZ8	645 aa	Known RBP	5.81	□□□□□ -1.48
SS18-223	ENST00000583595	SYTL1	Q8IYJ3	562 aa		5.81	□□□□□ -1.48
SS18-223	ENST00000583595	NETO2	Q8NC67	525 aa		5.81	□□□□□ -1.48
SS18-223	ENST00000583595	HIPK4	Q8NE63	616 aa		5.81	□□□□□ -1.48
SS18-223	ENST00000583595	OR2I1P	Q8NGU4	316 aa		5.81	□□□□□ -1.48
SS18-223	ENST00000583595	ALG3	Q92685	438 aa		5.81	□□□□□ -1.48
SS18-223	ENST00000583595	FATE1	Q969F0	183 aa		5.81	□□□□□ -1.48
SS18-223	ENST00000583595	GCC1	Q96CN9	775 aa		5.81	□□□□□ -1.48
SS18-223	ENST00000583595	PEX11G	Q96HA9	241 aa		5.81	□□□□□ -1.48
SS18-223	ENST00000583595	MAML3	Q96JK9	1138 aa		5.81	□□□□□ -1.48
SS18-223	ENST00000583595	LRRC27	Q9C0I9	530 aa		5.81	□□□□□ -1.48
SS18-223	ENST00000583595	BCAS3	Q9H6U6	928 aa		5.81	□□□□□ -1.48

Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms