RNA–Protein interactions for RNA: ENST00000580095.5

TOP3A-209, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 1 (best)

Gene TOP3A, Length 2,929 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-209ENST00000580095 PCNX4Q63HM2 1172 aa11.29□□□□□ -0.6
TOP3A-209ENST00000580095 RNF207Q6ZRF8 634 aa11.29□□□□□ -0.6
TOP3A-209ENST00000580095 JAMLQ86YT9 394 aa11.29□□□□□ -0.6
TOP3A-209ENST00000580095 PRELID2Q8N945 189 aa11.29□□□□□ -0.6
TOP3A-209ENST00000580095 LRRC45Q96CN5 670 aa11.29□□□□□ -0.6
TOP3A-209ENST00000580095 CEP170P1Q96L14 293 aa11.29□□□□□ -0.6
TOP3A-209ENST00000580095 PDCD2LQ9BRP1 358 aa11.29□□□□□ -0.6
TOP3A-209ENST00000580095 NUP85Q9BW27 656 aa11.29□□□□□ -0.6
TOP3A-209ENST00000580095 SLITRK6Q9H5Y7 841 aa11.29□□□□□ -0.6
TOP3A-209ENST00000580095 SLC38A10Q9HBR0 1119 aa11.29□□□□□ -0.6
TOP3A-209ENST00000580095 DNAJC17Q9NVM6 304 aaKnown RBP11.29□□□□□ -0.6
TOP3A-209ENST00000580095 GABBR1Q9UBS5 961 aa11.29□□□□□ -0.6
TOP3A-209ENST00000580095 PGAP2Q9UHJ9 254 aa11.29□□□□□ -0.6
TOP3A-209ENST00000580095 NOCTQ9UK39 431 aaKnown RBP11.29□□□□□ -0.6
TOP3A-209ENST00000580095 ZNRF3Q9ULT6 936 aa11.29□□□□□ -0.6
TOP3A-209ENST00000580095 TBX20Q9UMR3 447 aa11.29□□□□□ -0.6
TOP3A-209ENST00000580095 TRPC6Q9Y210 931 aa11.29□□□□□ -0.6
TOP3A-209ENST00000580095 DAAM1Q9Y4D1 1078 aa11.29□□□□□ -0.6
TOP3A-209ENST00000580095 UBE4BO95155 1302 aa11.28□□□□□ -0.6
TOP3A-209ENST00000580095 RPTORQ8N122 1335 aa11.28□□□□□ -0.6
TOP3A-209ENST00000580095 MAGEA9P43362 315 aa11.28□□□□□ -0.6
TOP3A-209ENST00000580095 GPC5P78333 572 aa11.28□□□□□ -0.6
TOP3A-209ENST00000580095 SLC39A4Q6P5W5 647 aa11.28□□□□□ -0.6
TOP3A-209ENST00000580095 CCDC25Q86WR0 208 aa11.28□□□□□ -0.6
TOP3A-209ENST00000580095 TMEM161BQ8NDZ6 487 aa11.28□□□□□ -0.6
TOP3A-209ENST00000580095 POMGNT1Q8WZA1 660 aa11.28□□□□□ -0.6
TOP3A-209ENST00000580095 ZNF653Q96CK0 615 aa11.28□□□□□ -0.6
TOP3A-209ENST00000580095 FAM212AQ96EL1 285 aa11.28□□□□□ -0.6
TOP3A-209ENST00000580095 CCT8L2Q96SF2 557 aa11.28□□□□□ -0.6
TOP3A-209ENST00000580095 FAM213AQ9BRX8 229 aa11.28□□□□□ -0.6
TOP3A-209ENST00000580095 ERP44Q9BS26 406 aa11.28□□□□□ -0.6
TOP3A-209ENST00000580095 HMGB1P1B2RPK0 211 aaPredicted RBP11.28□□□□□ -0.6
TOP3A-209ENST00000580095 CAND2O75155 1236 aa11.28□□□□□ -0.6
TOP3A-209ENST00000580095 FGFR4P22455 802 aa11.28□□□□□ -0.6
TOP3A-209ENST00000580095 GTF2BQ00403 316 aa11.28□□□□□ -0.6
TOP3A-209ENST00000580095 FMO1Q01740 532 aa11.28□□□□□ -0.6
TOP3A-209ENST00000580095 PRKG1Q13976 671 aa11.28□□□□□ -0.6
TOP3A-209ENST00000580095 SCARA3Q6AZY7 606 aa11.28□□□□□ -0.6
TOP3A-209ENST00000580095 SWSAP1Q6NVH7 229 aa11.28□□□□□ -0.6
TOP3A-209ENST00000580095 CD302Q8IX05 232 aa11.28□□□□□ -0.6
TOP3A-209ENST00000580095 RTKN2Q8IZC4 609 aa11.28□□□□□ -0.6
TOP3A-209ENST00000580095 CARD9Q9H257 536 aa11.28□□□□□ -0.6
TOP3A-209ENST00000580095 KMT5AQ9NQR1 393 aa11.28□□□□□ -0.6
TOP3A-209ENST00000580095 STK32BQ9NY57 414 aa11.28□□□□□ -0.6
TOP3A-209ENST00000580095 SYNPO2Q9UMS6 1093 aa11.28□□□□□ -0.6
TOP3A-209ENST00000580095 PFASO15067 1338 aa11.27□□□□□ -0.6
TOP3A-209ENST00000580095 GOLGA6L10A0A0M3HER8 536 aa11.27□□□□□ -0.6
TOP3A-209ENST00000580095 HNRNPDLO14979 420 aaKnown RBP11.27□□□□□ -0.6
TOP3A-209ENST00000580095 RPL21P46778 160 aaKnown RBP11.27□□□□□ -0.6
TOP3A-209ENST00000580095 WNT7BP56706 349 aa11.27□□□□□ -0.6
TOP3A-209ENST00000580095 TRIP13Q15645 432 aaPredicted RBP11.27□□□□□ -0.6
TOP3A-209ENST00000580095 SEZ6Q53EL9 994 aa11.27□□□□□ -0.6
TOP3A-209ENST00000580095 RNF187Q5TA31 235 aaPredicted RBP11.27□□□□□ -0.6
TOP3A-209ENST00000580095 NBPF12Q5TAG4 269 aaPredicted RBP11.27□□□□□ -0.6
TOP3A-209ENST00000580095 FBXW10Q5XX13 1052 aa11.27□□□□□ -0.6
TOP3A-209ENST00000580095 SPOPLQ6IQ16 392 aa11.27□□□□□ -0.6
TOP3A-209ENST00000580095 NLRP14Q86W24 1093 aa11.27□□□□□ -0.6
TOP3A-209ENST00000580095 FAM71AQ8IYT1 594 aa11.27□□□□□ -0.6
TOP3A-209ENST00000580095 ZNF564Q8TBZ8 553 aaPredicted RBP11.27□□□□□ -0.6
TOP3A-209ENST00000580095 PARD3BQ8TEW8 1205 aa11.27□□□□□ -0.6
TOP3A-209ENST00000580095 ZNF473Q8WTR7 871 aaKnown RBP11.27□□□□□ -0.6
TOP3A-209ENST00000580095 C1orf54Q8WWF1 131 aa11.27□□□□□ -0.6
TOP3A-209ENST00000580095 CPA5Q8WXQ8 436 aa11.27□□□□□ -0.6
TOP3A-209ENST00000580095 ATG4AQ8WYN0 398 aa11.27□□□□□ -0.6
TOP3A-209ENST00000580095 BICD1Q96G01 975 aa11.27□□□□□ -0.6
TOP3A-209ENST00000580095 ZSWIM1Q9BR11 485 aa11.27□□□□□ -0.6
TOP3A-209ENST00000580095 EPN3Q9H201 632 aa11.27□□□□□ -0.6
TOP3A-209ENST00000580095 SEMA4AQ9H3S1 761 aa11.27□□□□□ -0.6
TOP3A-209ENST00000580095 PXMP2Q9NR77 195 aa11.27□□□□□ -0.6
TOP3A-209ENST00000580095 PNMA2Q9UL42 364 aa11.27□□□□□ -0.6
TOP3A-209ENST00000580095 ATAD5Q96QE3 1844 aa11.27□□□□□ -0.61
TOP3A-209ENST00000580095 FOXO6A8MYZ6 492 aa11.27□□□□□ -0.61
TOP3A-209ENST00000580095 CLDN3O15551 220 aa11.27□□□□□ -0.61
TOP3A-209ENST00000580095 CYP11B1P15538 503 aa11.27□□□□□ -0.61
TOP3A-209ENST00000580095 PSMC5P62195 406 aa11.27□□□□□ -0.61
TOP3A-209ENST00000580095 QPCTQ16769 361 aa11.27□□□□□ -0.61
TOP3A-209ENST00000580095 DUPD1Q68J44 220 aa11.27□□□□□ -0.61
TOP3A-209ENST00000580095 DEFB132Q7Z7B7 95 aa11.27□□□□□ -0.61
TOP3A-209ENST00000580095 MCF2L2Q86YR7 1114 aa11.27□□□□□ -0.61
TOP3A-209ENST00000580095 MYCBPAPQ8TBZ2 947 aa11.27□□□□□ -0.61
TOP3A-209ENST00000580095 KAT2BQ92831 832 aa11.27□□□□□ -0.61
TOP3A-209ENST00000580095 TEPSINQ96N21 525 aa11.27□□□□□ -0.61
TOP3A-209ENST00000580095 DBR1Q9UK59 544 aaKnown RBP11.27□□□□□ -0.61
TOP3A-209ENST00000580095 TBC1D12O60347 775 aa11.26□□□□□ -0.61
TOP3A-209ENST00000580095 ATP2C2O75185 946 aa11.26□□□□□ -0.61
TOP3A-209ENST00000580095 RTN2O75298 545 aa11.26□□□□□ -0.61
TOP3A-209ENST00000580095 CFHP08603 1231 aa11.26□□□□□ -0.61
TOP3A-209ENST00000580095 VPS41P49754 854 aa11.26□□□□□ -0.61
TOP3A-209ENST00000580095 IFT88Q13099 833 aa11.26□□□□□ -0.61
TOP3A-209ENST00000580095 DMP1Q13316 513 aaPredicted RBP11.26□□□□□ -0.61
TOP3A-209ENST00000580095 ZDHHC24Q6UX98 284 aa11.26□□□□□ -0.61
TOP3A-209ENST00000580095 SV2AQ7L0J3 742 aa11.26□□□□□ -0.61
TOP3A-209ENST00000580095 PASD1Q8IV76 773 aa11.26□□□□□ -0.61
TOP3A-209ENST00000580095 RHOT2Q8IXI1 618 aa11.26□□□□□ -0.61
TOP3A-209ENST00000580095 CCDC105Q8IYK2 499 aa11.26□□□□□ -0.61
TOP3A-209ENST00000580095 KCTD17Q8N5Z5 321 aa11.26□□□□□ -0.61
TOP3A-209ENST00000580095 HELQQ8TDG4 1101 aa11.26□□□□□ -0.61
TOP3A-209ENST00000580095 RNF25Q96BH1 459 aaPredicted RBP11.26□□□□□ -0.61
TOP3A-209ENST00000580095 RNF146Q9NTX7 359 aa11.26□□□□□ -0.61
TOP3A-209ENST00000580095 ZDHHC18Q9NUE0 388 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms