RNA–Protein interactions for RNA: ENST00000577880.5

SMCHD1-203, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 4,951 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-203ENST00000577880 POLR2FP61218 127 aaKnown RBP3.12□□□□□ -1.91
SMCHD1-203ENST00000577880 FPGSQ05932 587 aa3.12□□□□□ -1.91
SMCHD1-203ENST00000577880 ZNF177Q13360 481 aaPredicted RBP3.12□□□□□ -1.91
SMCHD1-203ENST00000577880 VGLL4Q14135 290 aa3.12□□□□□ -1.91
SMCHD1-203ENST00000577880 MFSD10Q14728 455 aa3.12□□□□□ -1.91
SMCHD1-203ENST00000577880 CCDC85BQ15834 202 aaPredicted RBP3.12□□□□□ -1.91
SMCHD1-203ENST00000577880 HHATQ5VTY9 493 aa3.12□□□□□ -1.91
SMCHD1-203ENST00000577880 TTC19Q6DKK2 380 aaPredicted RBP3.12□□□□□ -1.91
SMCHD1-203ENST00000577880 DARS2Q6PI48 645 aaKnown RBP3.12□□□□□ -1.91
SMCHD1-203ENST00000577880 FOXR1Q6PIV2 292 aa3.12□□□□□ -1.91
SMCHD1-203ENST00000577880 PRR23CQ6ZRP0 262 aa3.12□□□□□ -1.91
SMCHD1-203ENST00000577880 TMTC3Q6ZXV5 915 aa3.12□□□□□ -1.91
SMCHD1-203ENST00000577880 TAS2R42Q7RTR8 314 aa3.12□□□□□ -1.91
SMCHD1-203ENST00000577880 SZRD1Q7Z422 152 aa3.12□□□□□ -1.91
SMCHD1-203ENST00000577880 FBXO33Q7Z6M2 555 aa3.12□□□□□ -1.91
SMCHD1-203ENST00000577880 MTERF4Q7Z6M4 381 aaKnown RBP3.12□□□□□ -1.91
SMCHD1-203ENST00000577880 TMTC1Q8IUR5 882 aa3.12□□□□□ -1.91
SMCHD1-203ENST00000577880 CD302Q8IX05 232 aa3.12□□□□□ -1.91
SMCHD1-203ENST00000577880 HDDC3Q8N4P3 179 aa3.12□□□□□ -1.91
SMCHD1-203ENST00000577880 DNERQ8NFT8 737 aa3.12□□□□□ -1.91
SMCHD1-203ENST00000577880 ATL2Q8NHH9 583 aa3.12□□□□□ -1.91
SMCHD1-203ENST00000577880 OTUD7AQ8TE49 926 aaPredicted RBP3.12□□□□□ -1.91
SMCHD1-203ENST00000577880 DDI1Q8WTU0 396 aa3.12□□□□□ -1.91
SMCHD1-203ENST00000577880 SUSD6Q92537 303 aa3.12□□□□□ -1.91
SMCHD1-203ENST00000577880 USP13Q92995 863 aaPredicted RBP3.12□□□□□ -1.91
SMCHD1-203ENST00000577880 AKT1S1Q96B36 256 aa3.12□□□□□ -1.91
SMCHD1-203ENST00000577880 DRC3Q9H069 523 aa3.12□□□□□ -1.91
SMCHD1-203ENST00000577880 UBE2TQ9NPD8 197 aaPredicted RBP3.12□□□□□ -1.91
SMCHD1-203ENST00000577880 KLHL8Q9P2G9 620 aaPredicted RBP3.12□□□□□ -1.91
SMCHD1-203ENST00000577880 NFE2L3Q9Y4A8 694 aa3.12□□□□□ -1.91
SMCHD1-203ENST00000577880 TRPV2Q9Y5S1 764 aa3.12□□□□□ -1.91
SMCHD1-203ENST00000577880 PRDM15P57071 1507 aaPredicted RBP3.12□□□□□ -1.91
SMCHD1-203ENST00000577880 ZC3H13Q5T200 1668 aaKnown RBP3.12□□□□□ -1.91
SMCHD1-203ENST00000577880 NRKQ7Z2Y5 1582 aa3.12□□□□□ -1.91
SMCHD1-203ENST00000577880 UBE4BO95155 1302 aa3.12□□□□□ -1.91
SMCHD1-203ENST00000577880 H3BRJ5 948 aa3.12□□□□□ -1.91
SMCHD1-203ENST00000577880 ZBED1O96006 694 aa3.12□□□□□ -1.91
SMCHD1-203ENST00000577880 IGKV5-2P06315 115 aa3.12□□□□□ -1.91
SMCHD1-203ENST00000577880 VCAM1P19320 739 aa3.12□□□□□ -1.91
SMCHD1-203ENST00000577880 YWHABP31946 246 aaKnown RBP3.12□□□□□ -1.91
SMCHD1-203ENST00000577880 ADCY8P40145 1251 aa3.12□□□□□ -1.91
SMCHD1-203ENST00000577880 CDR2Q01850 454 aa3.12□□□□□ -1.91
SMCHD1-203ENST00000577880 CENPCQ03188 943 aa3.12□□□□□ -1.91
SMCHD1-203ENST00000577880 NME3Q13232 169 aa3.12□□□□□ -1.91
SMCHD1-203ENST00000577880 PEX6Q13608 980 aa3.12□□□□□ -1.91
SMCHD1-203ENST00000577880 MCM6Q14566 821 aa3.12□□□□□ -1.91
SMCHD1-203ENST00000577880 INAVAQ3KP66 663 aa3.12□□□□□ -1.91
SMCHD1-203ENST00000577880 WDR72Q3MJ13 1102 aa3.12□□□□□ -1.91
SMCHD1-203ENST00000577880 ATF7IP2Q5U623 682 aa3.12□□□□□ -1.91
SMCHD1-203ENST00000577880 FYB2Q5VWT5 728 aa3.12□□□□□ -1.91
SMCHD1-203ENST00000577880 INTS5Q6P9B9 1019 aaKnown RBP3.12□□□□□ -1.91
SMCHD1-203ENST00000577880 CXCL17Q6UXB2 119 aa3.12□□□□□ -1.91
SMCHD1-203ENST00000577880 KIAA1324Q6UXG2 1013 aaKnown RBP3.12□□□□□ -1.91
SMCHD1-203ENST00000577880 GPD1LQ8N335 351 aa3.12□□□□□ -1.91
SMCHD1-203ENST00000577880 DCLK2Q8N568 766 aa3.12□□□□□ -1.91
SMCHD1-203ENST00000577880 ATP6V0D2Q8N8Y2 350 aa3.12□□□□□ -1.91
SMCHD1-203ENST00000577880 NLGN2Q8NFZ4 835 aa3.12□□□□□ -1.91
SMCHD1-203ENST00000577880 OSCP1Q8WVF1 389 aa3.12□□□□□ -1.91
SMCHD1-203ENST00000577880 GLMNQ92990 594 aa3.12□□□□□ -1.91
SMCHD1-203ENST00000577880 FBXO32Q969P5 355 aa3.12□□□□□ -1.91
SMCHD1-203ENST00000577880 TMEM143Q96AN5 459 aa3.12□□□□□ -1.91
SMCHD1-203ENST00000577880 ULK4Q96C45 1275 aa3.12□□□□□ -1.91
SMCHD1-203ENST00000577880 CFAP36Q96G28 342 aa3.12□□□□□ -1.91
SMCHD1-203ENST00000577880 CAPZA3Q96KX2 299 aa3.12□□□□□ -1.91
SMCHD1-203ENST00000577880 SPATA17Q96L03 361 aa3.12□□□□□ -1.91
SMCHD1-203ENST00000577880 AGBL1Q96MI9 1066 aa3.12□□□□□ -1.91
SMCHD1-203ENST00000577880 MED15Q96RN5 788 aa3.12□□□□□ -1.91
SMCHD1-203ENST00000577880 ARHGAP9Q9BRR9 750 aa3.12□□□□□ -1.91
SMCHD1-203ENST00000577880 KIFC3Q9BVG8 833 aa3.12□□□□□ -1.91
SMCHD1-203ENST00000577880 KIAA1683Q9H0B3 1180 aa3.12□□□□□ -1.91
SMCHD1-203ENST00000577880 NDFIP2Q9NV92 336 aa3.12□□□□□ -1.91
SMCHD1-203ENST00000577880 IFNKQ9P0W0 207 aa3.12□□□□□ -1.91
SMCHD1-203ENST00000577880 STK39Q9UEW8 545 aa3.12□□□□□ -1.91
SMCHD1-203ENST00000577880 GAKO14976 1311 aa3.12□□□□□ -1.91
SMCHD1-203ENST00000577880 ZNF536O15090 1300 aa3.12□□□□□ -1.91
SMCHD1-203ENST00000577880 IGSF9BQ9UPX0 1349 aa3.12□□□□□ -1.91
SMCHD1-203ENST00000577880 TNRC6CQ9HCJ0 1690 aaKnown RBP3.12□□□□□ -1.91
SMCHD1-203ENST00000577880 LRRD1A4D1F6 860 aa3.12□□□□□ -1.91
SMCHD1-203ENST00000577880 SFI1A8K8P3 1242 aa3.12□□□□□ -1.91
SMCHD1-203ENST00000577880 SH2B2O14492 632 aaPredicted RBP3.12□□□□□ -1.91
SMCHD1-203ENST00000577880 CREB3O43889 395 aa3.12□□□□□ -1.91
SMCHD1-203ENST00000577880 DDHD2O94830 711 aa3.12□□□□□ -1.91
SMCHD1-203ENST00000577880 PGK1P00558 417 aa3.12□□□□□ -1.91
SMCHD1-203ENST00000577880 KRT1P04264 644 aa3.12□□□□□ -1.91
SMCHD1-203ENST00000577880 CALB1P05937 261 aa3.12□□□□□ -1.91
SMCHD1-203ENST00000577880 HIST1H2AGP0C0S8 130 aaPredicted RBP3.12□□□□□ -1.91
SMCHD1-203ENST00000577880 HIST1H2ADP20671 130 aa3.12□□□□□ -1.91
SMCHD1-203ENST00000577880 PSMA2P25787 234 aa3.12□□□□□ -1.91
SMCHD1-203ENST00000577880 KLRC1P26715 233 aa3.12□□□□□ -1.91
SMCHD1-203ENST00000577880 WEE1P30291 646 aa3.12□□□□□ -1.91
SMCHD1-203ENST00000577880 ETFBP38117 255 aa3.12□□□□□ -1.91
SMCHD1-203ENST00000577880 YWHAGP61981 247 aaKnown RBP eCLIP3.12□□□□□ -1.91
SMCHD1-203ENST00000577880 PHEXP78562 749 aa3.12□□□□□ -1.91
SMCHD1-203ENST00000577880 MDM2Q00987 491 aaPredicted RBP3.12□□□□□ -1.91
SMCHD1-203ENST00000577880 PRKCEQ02156 737 aa3.12□□□□□ -1.91
SMCHD1-203ENST00000577880 EMC2Q15006 297 aa3.12□□□□□ -1.91
SMCHD1-203ENST00000577880 SETDB1Q15047 1291 aa3.12□□□□□ -1.91
SMCHD1-203ENST00000577880 LONRF2Q1L5Z9 754 aa3.12□□□□□ -1.91
SMCHD1-203ENST00000577880 SLFNL1Q499Z3 407 aa3.12□□□□□ -1.91
SMCHD1-203ENST00000577880 SBK1Q52WX2 424 aa3.12□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms