RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 DOCK1Q14185 1865 aa10.87□□□□□ -0.67
VPS53-220ENST00000576149 MIF4GDA9UHW6 222 aaKnown RBP10.86□□□□□ -0.67
VPS53-220ENST00000576149 ATP2A1O14983 1001 aa10.86□□□□□ -0.67
VPS53-220ENST00000576149 CYP26A1O43174 497 aa10.86□□□□□ -0.67
VPS53-220ENST00000576149 DAPK3O43293 454 aa10.86□□□□□ -0.67
VPS53-220ENST00000576149 MTA2O94776 668 aa10.86□□□□□ -0.67
VPS53-220ENST00000576149 PSAPP07602 524 aa10.86□□□□□ -0.67
VPS53-220ENST00000576149 GTF2H1P32780 548 aa10.86□□□□□ -0.67
VPS53-220ENST00000576149 HMGCS2P54868 508 aa10.86□□□□□ -0.67
VPS53-220ENST00000576149 SOX10P56693 466 aa10.86□□□□□ -0.67
VPS53-220ENST00000576149 RTP1P59025 263 aa10.86□□□□□ -0.67
VPS53-220ENST00000576149 TMEM132BQ14DG7 1078 aa10.86□□□□□ -0.67
VPS53-220ENST00000576149 CLUL1Q15846 466 aa10.86□□□□□ -0.67
VPS53-220ENST00000576149 PPP2R5EQ16537 467 aa10.86□□□□□ -0.67
VPS53-220ENST00000576149 SWSAP1Q6NVH7 229 aa10.86□□□□□ -0.67
VPS53-220ENST00000576149 SLC47A2Q86VL8 602 aa10.86□□□□□ -0.67
VPS53-220ENST00000576149 ALG3Q92685 438 aa10.86□□□□□ -0.67
VPS53-220ENST00000576149 LRRC45Q96CN5 670 aa10.86□□□□□ -0.67
VPS53-220ENST00000576149 POP1Q99575 1024 aaKnown RBP10.86□□□□□ -0.67
VPS53-220ENST00000576149 UTP3Q9NQZ2 479 aaKnown RBP eCLIP10.86□□□□□ -0.676e-7■■■■■ 173.1
VPS53-220ENST00000576149 GJA3Q9Y6H8 435 aa10.86□□□□□ -0.67
VPS53-220ENST00000576149 NFASCO94856 1347 aa10.86□□□□□ -0.67
VPS53-220ENST00000576149 ADGRA3Q8IWK6 1321 aa10.86□□□□□ -0.67
VPS53-220ENST00000576149 PPFIA4O75335 1185 aa10.86□□□□□ -0.67
VPS53-220ENST00000576149 DGAT1O75907 488 aa10.86□□□□□ -0.67
VPS53-220ENST00000576149 HSD17B3P37058 310 aa10.86□□□□□ -0.67
VPS53-220ENST00000576149 ENPEPQ07075 957 aa10.86□□□□□ -0.67
VPS53-220ENST00000576149 CYP24A1Q07973 514 aa10.86□□□□□ -0.67
VPS53-220ENST00000576149 PRPF4BQ13523 1007 aaKnown RBP10.86□□□□□ -0.67
VPS53-220ENST00000576149 LRIG3Q6UXM1 1119 aa10.86□□□□□ -0.67
VPS53-220ENST00000576149 USP37Q86T82 979 aa10.86□□□□□ -0.67
VPS53-220ENST00000576149 FBXL13Q8NEE6 735 aa10.86□□□□□ -0.67
VPS53-220ENST00000576149 MCPH1Q8NEM0 835 aa10.86□□□□□ -0.67
VPS53-220ENST00000576149 POMGNT1Q8WZA1 660 aa10.86□□□□□ -0.67
VPS53-220ENST00000576149 CDHR1Q96JP9 859 aa10.86□□□□□ -0.67
VPS53-220ENST00000576149 RPS6KC1Q96S38 1066 aa10.86□□□□□ -0.67
VPS53-220ENST00000576149 CELF4Q9BZC1 486 aaKnown RBP10.86□□□□□ -0.67
VPS53-220ENST00000576149 JPH1Q9HDC5 661 aaPredicted RBP10.86□□□□□ -0.67
VPS53-220ENST00000576149 XPNPEP1Q9NQW7 623 aa10.86□□□□□ -0.67
VPS53-220ENST00000576149 RAB20Q9NX57 234 aa10.86□□□□□ -0.67
VPS53-220ENST00000576149 CYP39A1Q9NYL5 469 aa10.86□□□□□ -0.67
VPS53-220ENST00000576149 PLAAQ9Y263 795 aa10.86□□□□□ -0.67
VPS53-220ENST00000576149 TELO2Q9Y4R8 837 aa10.86□□□□□ -0.67
VPS53-220ENST00000576149 RLFQ13129 1914 aa10.85□□□□□ -0.67
VPS53-220ENST00000576149 A6NNZ2 444 aa10.85□□□□□ -0.67
VPS53-220ENST00000576149 C19orf81C9J6K1 198 aa10.85□□□□□ -0.67
VPS53-220ENST00000576149 FZD9O00144 591 aa10.85□□□□□ -0.67
VPS53-220ENST00000576149 TULP2O00295 520 aa10.85□□□□□ -0.67
VPS53-220ENST00000576149 ZBTB7AO95365 584 aa10.85□□□□□ -0.67
VPS53-220ENST00000576149 FMO1Q01740 532 aa10.85□□□□□ -0.67
VPS53-220ENST00000576149 ZNF211Q13398 564 aaPredicted RBP10.85□□□□□ -0.67
VPS53-220ENST00000576149 UAP1Q16222 522 aaPredicted RBP10.85□□□□□ -0.67
VPS53-220ENST00000576149 TUBB8Q3ZCM7 444 aa10.85□□□□□ -0.67
VPS53-220ENST00000576149 BRDTQ58F21 947 aaPredicted RBP10.85□□□□□ -0.67
VPS53-220ENST00000576149 EMC10Q5UCC4 262 aa10.85□□□□□ -0.67
VPS53-220ENST00000576149 NAA35Q5VZE5 725 aa10.85□□□□□ -0.67
VPS53-220ENST00000576149 KCTD16Q68DU8 428 aa10.85□□□□□ -0.67
VPS53-220ENST00000576149 SH2D3CQ8N5H7 860 aa10.85□□□□□ -0.67
VPS53-220ENST00000576149 TAS1R2Q8TE23 839 aa10.85□□□□□ -0.67
VPS53-220ENST00000576149 MORC4Q8TE76 937 aa10.85□□□□□ -0.67
VPS53-220ENST00000576149 NT5C1BQ96P26 610 aa10.85□□□□□ -0.67
VPS53-220ENST00000576149 ACP6Q9NPH0 428 aa10.85□□□□□ -0.67
VPS53-220ENST00000576149 FAM114A2Q9NRY5 505 aa10.85□□□□□ -0.67
VPS53-220ENST00000576149 TOPORSQ9NS56 1045 aaPredicted RBP10.85□□□□□ -0.67
VPS53-220ENST00000576149 SLC9A2Q9UBY0 812 aa10.85□□□□□ -0.67
VPS53-220ENST00000576149 UTP11Q9Y3A2 253 aaKnown RBP10.85□□□□□ -0.67
VPS53-220ENST00000576149 GRIN2DO15399 1336 aa10.85□□□□□ -0.67
VPS53-220ENST00000576149 SYNGAP1Q96PV0 1343 aa10.85□□□□□ -0.67
VPS53-220ENST00000576149 GOLGA6L10A0A0M3HER8 536 aa10.85□□□□□ -0.67
VPS53-220ENST00000576149 H0YGN5 161 aa10.85□□□□□ -0.67
VPS53-220ENST00000576149 STAM2O75886 525 aa10.85□□□□□ -0.67
VPS53-220ENST00000576149 MMEP08473 750 aa10.85□□□□□ -0.67
VPS53-220ENST00000576149 CYP11B1P15538 503 aa10.85□□□□□ -0.67
VPS53-220ENST00000576149 GARTP22102 1010 aa10.85□□□□□ -0.67
VPS53-220ENST00000576149 CDR2Q01850 454 aa10.85□□□□□ -0.67
VPS53-220ENST00000576149 ABHD15Q6UXT9 468 aa10.85□□□□□ -0.67
VPS53-220ENST00000576149 CATSPERGQ6ZRH7 1159 aa10.85□□□□□ -0.67
VPS53-220ENST00000576149 SV2AQ7L0J3 742 aa10.85□□□□□ -0.67
VPS53-220ENST00000576149 CCDC60Q8IWA6 550 aaPredicted RBP10.85□□□□□ -0.67
VPS53-220ENST00000576149 GPD1LQ8N335 351 aa10.85□□□□□ -0.67
VPS53-220ENST00000576149 UBL4BQ8N7F7 174 aa10.85□□□□□ -0.67
VPS53-220ENST00000576149 TEX13BQ9BXU2 312 aa10.85□□□□□ -0.67
VPS53-220ENST00000576149 ACAD9Q9H845 621 aa10.85□□□□□ -0.67
VPS53-220ENST00000576149 ERVK-5Q9HDB9 667 aa10.85□□□□□ -0.67
VPS53-220ENST00000576149 A1CFQ9NQ94 594 aaKnown RBP10.85□□□□□ -0.67
VPS53-220ENST00000576149 CYP26B1Q9NR63 512 aa10.85□□□□□ -0.67
VPS53-220ENST00000576149 TMOD4Q9NZQ9 345 aa10.85□□□□□ -0.67
VPS53-220ENST00000576149 FZD1Q9UP38 647 aa10.85□□□□□ -0.67
VPS53-220ENST00000576149 NFS1Q9Y697 457 aa10.85□□□□□ -0.67
VPS53-220ENST00000576149 LTBP3Q9NS15 1303 aa10.84□□□□□ -0.67
VPS53-220ENST00000576149 SPATA31C2B4DYI2 1134 aa10.84□□□□□ -0.67
VPS53-220ENST00000576149 HNRNPDLO14979 420 aaKnown RBP10.84□□□□□ -0.67
VPS53-220ENST00000576149 EIF3HO15372 352 aaKnown RBP eCLIP10.84□□□□□ -0.67
VPS53-220ENST00000576149 CYP1A2P05177 515 aa10.84□□□□□ -0.67
VPS53-220ENST00000576149 COMTP21964 271 aa10.84□□□□□ -0.67
VPS53-220ENST00000576149 FLT3P36888 993 aa10.84□□□□□ -0.67
VPS53-220ENST00000576149 PEX5P50542 639 aa10.84□□□□□ -0.67
VPS53-220ENST00000576149 ACTR2P61160 394 aa10.84□□□□□ -0.67
VPS53-220ENST00000576149 GNGT1P63211 74 aa10.84□□□□□ -0.67
VPS53-220ENST00000576149 PRKCEQ02156 737 aa10.84□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms