RNA–Protein interactions for RNA: ENST00000574087.1

NUP88-208, Transcript of nucleoporin 88, human

TSL 2

Gene NUP88, Length 548 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NUP88-208	ENST00000574087	EFEMP1	Q12805	493 aa		6.29	□□□□□ -1.4
NUP88-208	ENST00000574087	PIN1	Q13526	163 aa	Predicted RBP	6.29	□□□□□ -1.4
NUP88-208	ENST00000574087	FKBP15	Q5T1M5	1219 aa		6.29	□□□□□ -1.4
NUP88-208	ENST00000574087	RAVER1	Q8IY67	606 aa	Known RBP	6.29	□□□□□ -1.4
NUP88-208	ENST00000574087	TRMT2A	Q8IZ69	625 aa	Known RBP	6.29	□□□□□ -1.4
NUP88-208	ENST00000574087	DPF2	Q92785	391 aa		6.29	□□□□□ -1.4
NUP88-208	ENST00000574087	ARL8A	Q96BM9	186 aa		6.29	□□□□□ -1.4
NUP88-208	ENST00000574087	CDC5L	Q99459	802 aa	Known RBP	6.29	□□□□□ -1.4
NUP88-208	ENST00000574087	SMPD4	Q9NXE4	827 aa		6.29	□□□□□ -1.4
NUP88-208	ENST00000574087	INTU	Q9ULD6	942 aa		6.29	□□□□□ -1.4
NUP88-208	ENST00000574087	ZMYM3	Q14202	1370 aa		6.29	□□□□□ -1.4
NUP88-208	ENST00000574087	APBA1	Q02410	837 aa		6.28	□□□□□ -1.4
NUP88-208	ENST00000574087	PRAMEF14	Q5SWL7	426 aa		6.28	□□□□□ -1.4
NUP88-208	ENST00000574087	SPTY2D1	Q68D10	685 aa	Predicted RBP	6.28	□□□□□ -1.4
NUP88-208	ENST00000574087	MFSD5	Q6N075	450 aa		6.28	□□□□□ -1.4
NUP88-208	ENST00000574087	PQLC1	Q8N2U9	271 aa		6.28	□□□□□ -1.4
NUP88-208	ENST00000574087	D2HGDH	Q8N465	521 aa		6.28	□□□□□ -1.4
NUP88-208	ENST00000574087	MDM1	Q8TC05	714 aa		6.28	□□□□□ -1.4
NUP88-208	ENST00000574087	EDA	Q92838	391 aa		6.28	□□□□□ -1.4
NUP88-208	ENST00000574087	CAMKK2	Q96RR4	588 aa		6.28	□□□□□ -1.4
NUP88-208	ENST00000574087	RTFDC1	Q9BY42	306 aa	Predicted RBP	6.28	□□□□□ -1.4
NUP88-208	ENST00000574087	KRTAP3-1	Q9BYR8	98 aa		6.28	□□□□□ -1.4
NUP88-208	ENST00000574087	RHOBTB2	Q9BYZ6	727 aa		6.28	□□□□□ -1.4
NUP88-208	ENST00000574087	HECA	Q9UBI9	543 aa	Predicted RBP	6.28	□□□□□ -1.4
NUP88-208	ENST00000574087	IP6K2	Q9UHH9	426 aa		6.28	□□□□□ -1.4
NUP88-208	ENST00000574087	SAP30BP	Q9UHR5	308 aa	Known RBP	6.28	□□□□□ -1.4
NUP88-208	ENST00000574087	LIMCH1	Q9UPQ0	1083 aa		6.28	□□□□□ -1.4
NUP88-208	ENST00000574087	GIT1	Q9Y2X7	761 aa		6.28	□□□□□ -1.4
NUP88-208	ENST00000574087	WNT10B	O00744	389 aa		6.27	□□□□□ -1.41
NUP88-208	ENST00000574087	ACO1	P21399	889 aa	Known RBP	6.27	□□□□□ -1.41
NUP88-208	ENST00000574087	GUCY1A2	P33402	732 aa		6.27	□□□□□ -1.41
NUP88-208	ENST00000574087	MAGEA10	P43363	369 aa	Predicted RBP	6.27	□□□□□ -1.41
NUP88-208	ENST00000574087	PER3	P56645	1201 aa		6.27	□□□□□ -1.41
NUP88-208	ENST00000574087	FAM214A	Q32MH5	1076 aa		6.27	□□□□□ -1.41
NUP88-208	ENST00000574087	PDZD4	Q76G19	769 aa	Predicted RBP	6.27	□□□□□ -1.41
NUP88-208	ENST00000574087	ZNF572	Q7Z3I7	529 aa	Predicted RBP	6.27	□□□□□ -1.41
NUP88-208	ENST00000574087	CHST13	Q8NET6	341 aa		6.27	□□□□□ -1.41
NUP88-208	ENST00000574087	REPS2	Q8NFH8	660 aa		6.27	□□□□□ -1.41
NUP88-208	ENST00000574087	HSPBAP1	Q96EW2	488 aa		6.27	□□□□□ -1.41
NUP88-208	ENST00000574087	CEP95	Q96GE4	821 aa		6.27	□□□□□ -1.41
NUP88-208	ENST00000574087	C8orf49	Q96NF6	230 aa		6.27	□□□□□ -1.41
NUP88-208	ENST00000574087	CDH19	Q9H159	772 aa		6.27	□□□□□ -1.41
NUP88-208	ENST00000574087	CSRNP2	Q9H175	543 aa		6.27	□□□□□ -1.41
NUP88-208	ENST00000574087	DEF6	Q9H4E7	631 aa		6.27	□□□□□ -1.41
NUP88-208	ENST00000574087	ANKRD6	Q9Y2G4	727 aa		6.27	□□□□□ -1.41
NUP88-208	ENST00000574087	ATRNL1	Q5VV63	1379 aa		6.27	□□□□□ -1.41
NUP88-208	ENST00000574087	CCDC154	A6NI56	674 aa		6.26	□□□□□ -1.41
NUP88-208	ENST00000574087	ZSCAN20	P17040	1043 aa	Predicted RBP	6.26	□□□□□ -1.41
NUP88-208	ENST00000574087	SELENOP	P49908	381 aa		6.26	□□□□□ -1.41
NUP88-208	ENST00000574087	R3HDM1	Q15032	1099 aa	Known RBP	6.26	□□□□□ -1.41
NUP88-208	ENST00000574087	ELAVL1	Q15717	326 aa	Known RBP	6.26	□□□□□ -1.41
NUP88-208	ENST00000574087	NFE2	Q16621	373 aa	Predicted RBP	6.26	□□□□□ -1.41
NUP88-208	ENST00000574087	C3orf36	Q3SXR2	165 aa		6.26	□□□□□ -1.41
NUP88-208	ENST00000574087	HS1BP3	Q53T59	392 aa		6.26	□□□□□ -1.41
NUP88-208	ENST00000574087	FAM47A	Q5JRC9	791 aa		6.26	□□□□□ -1.41
NUP88-208	ENST00000574087	MFSD14B	Q5SR56	506 aa		6.26	□□□□□ -1.41
NUP88-208	ENST00000574087	ZNF585A	Q6P3V2	769 aa		6.26	□□□□□ -1.41
NUP88-208	ENST00000574087	APBB1IP	Q7Z5R6	666 aa	Predicted RBP	6.26	□□□□□ -1.41
NUP88-208	ENST00000574087	MIER2	Q8N344	545 aa		6.26	□□□□□ -1.41
NUP88-208	ENST00000574087	ZNF808	Q8N4W9	903 aa	Predicted RBP	6.26	□□□□□ -1.41
NUP88-208	ENST00000574087	MDGA1	Q8NFP4	955 aa		6.26	□□□□□ -1.41
NUP88-208	ENST00000574087	HDAC10	Q969S8	669 aa		6.26	□□□□□ -1.41
NUP88-208	ENST00000574087	MIEF2	Q96C03	454 aa		6.26	□□□□□ -1.41
NUP88-208	ENST00000574087	CYFIP2	Q96F07	1278 aa		6.26	□□□□□ -1.41
NUP88-208	ENST00000574087	FAM89A	Q96GI7	184 aa		6.26	□□□□□ -1.41
NUP88-208	ENST00000574087	NUP88	Q99567	741 aa	Predicted RBP	6.26	□□□□□ -1.41
NUP88-208	ENST00000574087	C7orf25	Q9BPX7	421 aa		6.26	□□□□□ -1.41
NUP88-208	ENST00000574087	PDCD2L	Q9BRP1	358 aa		6.26	□□□□□ -1.41
NUP88-208	ENST00000574087	LSM14B	Q9BX40	385 aa	Known RBP	6.26	□□□□□ -1.41
NUP88-208	ENST00000574087	C1QTNF3	Q9BXJ4	246 aa		6.26	□□□□□ -1.41
NUP88-208	ENST00000574087	KCNH6	Q9H252	994 aa		6.26	□□□□□ -1.41
NUP88-208	ENST00000574087	RFPL1	O75677	317 aa		6.25	□□□□□ -1.41
NUP88-208	ENST00000574087	IL33	O95760	270 aa		6.25	□□□□□ -1.41
NUP88-208	ENST00000574087	ALOX15	P16050	662 aa	Predicted RBP	6.25	□□□□□ -1.41
NUP88-208	ENST00000574087	VCAM1	P19320	739 aa		6.25	□□□□□ -1.41
NUP88-208	ENST00000574087	PTPN7	P35236	360 aa		6.25	□□□□□ -1.41
NUP88-208	ENST00000574087	FLT3LG	P49771	235 aa		6.25	□□□□□ -1.41
NUP88-208	ENST00000574087	ADAM17	P78536	824 aa		6.25	□□□□□ -1.41
NUP88-208	ENST00000574087	SP140	Q13342	867 aa		6.25	□□□□□ -1.41
NUP88-208	ENST00000574087	SPATS1	Q496A3	300 aa		6.25	□□□□□ -1.41
NUP88-208	ENST00000574087	DOK3	Q7L591	496 aa		6.25	□□□□□ -1.41
NUP88-208	ENST00000574087	GPRIN1	Q7Z2K8	1008 aa		6.25	□□□□□ -1.41
NUP88-208	ENST00000574087	SGMS1	Q86VZ5	419 aa		6.25	□□□□□ -1.41
NUP88-208	ENST00000574087	ELOA2	Q8IYF1	753 aa	Predicted RBP	6.25	□□□□□ -1.41
NUP88-208	ENST00000574087	ANKRD35	Q8N283	1001 aa		6.25	□□□□□ -1.41
NUP88-208	ENST00000574087	JDP2	Q8WYK2	163 aa		6.25	□□□□□ -1.41
NUP88-208	ENST00000574087	UHRF1	Q96T88	793 aa	Predicted RBP	6.25	□□□□□ -1.41
NUP88-208	ENST00000574087	KLC2	Q9H0B6	622 aa		6.25	□□□□□ -1.41
NUP88-208	ENST00000574087	MANSC1	Q9H8J5	431 aa		6.25	□□□□□ -1.41
NUP88-208	ENST00000574087	LANCL2	Q9NS86	450 aa		6.25	□□□□□ -1.41
NUP88-208	ENST00000574087	ZIM2	Q9NZV7	527 aa		6.25	□□□□□ -1.41
NUP88-208	ENST00000574087	ZNF180	Q9UJW8	692 aa		6.25	□□□□□ -1.41
NUP88-208	ENST00000574087	TCAF1	Q9Y4C2	921 aa		6.25	□□□□□ -1.41
NUP88-208	ENST00000574087	PCDHA13	Q9Y5I0	950 aa		6.25	□□□□□ -1.41
NUP88-208	ENST00000574087	EID1	Q9Y6B2	187 aa		6.25	□□□□□ -1.41
NUP88-208	ENST00000574087	SGTA	O43765	313 aa		6.24	□□□□□ -1.41
NUP88-208	ENST00000574087	MFAP3L	O75121	409 aa		6.24	□□□□□ -1.41
NUP88-208	ENST00000574087	AMY1A	P04745	511 aa		6.24	□□□□□ -1.41
NUP88-208	ENST00000574087	POU2F2	P09086	479 aa		6.24	□□□□□ -1.41
NUP88-208	ENST00000574087	PF4V1	P10720	104 aa		6.24	□□□□□ -1.41

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