RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 HACE1Q8IYU2 909 aa12.4□□□□□ -0.42
VPS53-207ENST00000570510 SH2D3AQ9BRG2 576 aa12.4□□□□□ -0.42
VPS53-207ENST00000570510 IER2Q9BTL4 223 aa12.4□□□□□ -0.42
VPS53-207ENST00000570510 TRIM6Q9C030 488 aaPredicted RBP12.4□□□□□ -0.42
VPS53-207ENST00000570510 CHST7Q9NS84 486 aa12.4□□□□□ -0.42
VPS53-207ENST00000570510 BARHL2Q9NY43 387 aa12.4□□□□□ -0.42
VPS53-207ENST00000570510 C8AP07357 584 aa12.39□□□□□ -0.43
VPS53-207ENST00000570510 SRGAP2CP0DJJ0 459 aa12.39□□□□□ -0.43
VPS53-207ENST00000570510 NCLP19338 710 aaKnown RBP12.39□□□□□ -0.43
VPS53-207ENST00000570510 MLH1P40692 756 aa12.39□□□□□ -0.43
VPS53-207ENST00000570510 CXCL12P48061 93 aa12.39□□□□□ -0.43
VPS53-207ENST00000570510 CLK2P49760 499 aaKnown RBP12.39□□□□□ -0.43
VPS53-207ENST00000570510 PABPC1LQ4VXU2 614 aaKnown RBP12.39□□□□□ -0.43
VPS53-207ENST00000570510 TTC22Q5TAA0 569 aa12.39□□□□□ -0.43
VPS53-207ENST00000570510 LILRA6Q6PI73 481 aa12.39□□□□□ -0.43
VPS53-207ENST00000570510 MIER3Q7Z3K6 550 aa12.39□□□□□ -0.43
VPS53-207ENST00000570510 CEP57Q86XR8 500 aa12.39□□□□□ -0.43
VPS53-207ENST00000570510 REXO1Q8N1G1 1221 aaKnown RBP12.39□□□□□ -0.43
VPS53-207ENST00000570510 ITFG1Q8TB96 612 aa12.39□□□□□ -0.43
VPS53-207ENST00000570510 ING5Q8WYH8 240 aa12.39□□□□□ -0.43
VPS53-207ENST00000570510 GAD1Q99259 594 aa12.39□□□□□ -0.43
VPS53-207ENST00000570510 APOL6Q9BWW8 343 aa12.39□□□□□ -0.43
VPS53-207ENST00000570510 TEKT3Q9BXF9 490 aa12.39□□□□□ -0.43
VPS53-207ENST00000570510 BRD9Q9H8M2 597 aa12.39□□□□□ -0.43
VPS53-207ENST00000570510 C6orf50Q9HD87 102 aa12.39□□□□□ -0.43
VPS53-207ENST00000570510 ADAM28Q9UKQ2 775 aa12.39□□□□□ -0.43
VPS53-207ENST00000570510 MRPS23Q9Y3D9 190 aaKnown RBP12.39□□□□□ -0.43
VPS53-207ENST00000570510 DOCK8Q8NF50 2099 aa12.38□□□□□ -0.43
VPS53-207ENST00000570510 ECI2O75521 394 aa12.38□□□□□ -0.43
VPS53-207ENST00000570510 PAPLNO95428 1278 aa12.38□□□□□ -0.43
VPS53-207ENST00000570510 NEFLP07196 543 aa12.38□□□□□ -0.43
VPS53-207ENST00000570510 CNR2P34972 360 aa12.38□□□□□ -0.43
VPS53-207ENST00000570510 SCNN1GP51170 649 aa12.38□□□□□ -0.43
VPS53-207ENST00000570510 TARBP2Q15633 366 aaKnown RBP12.38□□□□□ -0.43
VPS53-207ENST00000570510 UGCGQ16739 394 aa12.38□□□□□ -0.43
VPS53-207ENST00000570510 LRCH2Q5VUJ6 765 aa12.38□□□□□ -0.43
VPS53-207ENST00000570510 SRGAP1Q7Z6B7 1085 aa12.38□□□□□ -0.43
VPS53-207ENST00000570510 GPR65Q8IYL9 337 aa12.38□□□□□ -0.43
VPS53-207ENST00000570510 CCDC12Q8WUD4 166 aaPredicted RBP12.38□□□□□ -0.43
VPS53-207ENST00000570510 SLC7A3Q8WY07 619 aa12.38□□□□□ -0.43
VPS53-207ENST00000570510 MCRS1Q96EZ8 462 aa12.38□□□□□ -0.43
VPS53-207ENST00000570510 NIFKQ9BYG3 293 aaKnown RBP12.38□□□□□ -0.43
VPS53-207ENST00000570510 LRRC2Q9BYS8 371 aa12.38□□□□□ -0.43
VPS53-207ENST00000570510 GPR62Q9BZJ7 368 aa12.38□□□□□ -0.43
VPS53-207ENST00000570510 CHRDQ9H2X0 955 aa12.38□□□□□ -0.43
VPS53-207ENST00000570510 LMAN1LQ9HAT1 526 aa12.38□□□□□ -0.43
VPS53-207ENST00000570510 FBXW11Q9UKB1 542 aa12.38□□□□□ -0.43
VPS53-207ENST00000570510 ZMIZ1Q9ULJ6 1067 aa12.38□□□□□ -0.43
VPS53-207ENST00000570510 NAP1L2Q9ULW6 460 aaPredicted RBP12.38□□□□□ -0.43
VPS53-207ENST00000570510 COL4A3BPQ9Y5P4 624 aa12.38□□□□□ -0.43
VPS53-207ENST00000570510 SF3B1O75533 1304 aaKnown RBP eCLIP12.37□□□□□ -0.43
VPS53-207ENST00000570510 CNTNAP5Q8WYK1 1306 aa12.37□□□□□ -0.43
VPS53-207ENST00000570510 TMEM150BA6NC51 233 aa12.37□□□□□ -0.43
VPS53-207ENST00000570510 F8W810 466 aa12.37□□□□□ -0.43
VPS53-207ENST00000570510 MAFO75444 373 aaPredicted RBP12.37□□□□□ -0.43
VPS53-207ENST00000570510 HOXB3P14651 431 aaPredicted RBP12.37□□□□□ -0.43
VPS53-207ENST00000570510 HOXA9P31269 272 aa12.37□□□□□ -0.43
VPS53-207ENST00000570510 RTN1Q16799 776 aa12.37□□□□□ -0.43
VPS53-207ENST00000570510 HEATR6Q6AI08 1181 aaKnown RBP12.37□□□□□ -0.43
VPS53-207ENST00000570510 PRSS55Q6UWB4 352 aaPredicted RBP12.37□□□□□ -0.43
VPS53-207ENST00000570510 EXOC8Q8IYI6 725 aa12.37□□□□□ -0.43
VPS53-207ENST00000570510 RNF168Q8IYW5 571 aaPredicted RBP12.37□□□□□ -0.43
VPS53-207ENST00000570510 SLC7A14Q8TBB6 771 aa12.37□□□□□ -0.43
VPS53-207ENST00000570510 FAM3CQ92520 227 aa12.37□□□□□ -0.43
VPS53-207ENST00000570510 DNASE1L2Q92874 299 aa12.37□□□□□ -0.43
VPS53-207ENST00000570510 ZFP42Q96MM3 310 aa12.37□□□□□ -0.43
VPS53-207ENST00000570510 RIT2Q99578 217 aa12.37□□□□□ -0.43
VPS53-207ENST00000570510 TTPALQ9BTX7 342 aa12.37□□□□□ -0.43
VPS53-207ENST00000570510 IFT122Q9HBG6 1241 aa12.37□□□□□ -0.43
VPS53-207ENST00000570510 GDE1Q9NZC3 331 aa12.37□□□□□ -0.43
VPS53-207ENST00000570510 KCNH3Q9ULD8 1083 aa12.37□□□□□ -0.43
VPS53-207ENST00000570510 IPPQ9Y573 584 aa12.37□□□□□ -0.43
VPS53-207ENST00000570510 RBM8AQ9Y5S9 174 aaKnown RBP12.37□□□□□ -0.43
VPS53-207ENST00000570510 PATJQ8NI35 1801 aa12.37□□□□□ -0.43
VPS53-207ENST00000570510 IGKV6-21A0A0C4DH24 114 aa12.36□□□□□ -0.43
VPS53-207ENST00000570510 CHURC1-FNTBB4DL54 471 aa12.36□□□□□ -0.43
VPS53-207ENST00000570510 ZBTB43O43298 467 aa12.36□□□□□ -0.43
VPS53-207ENST00000570510 GNA11P29992 359 aa12.36□□□□□ -0.43
VPS53-207ENST00000570510 FNTBP49356 437 aa12.36□□□□□ -0.43
VPS53-207ENST00000570510 DSC1Q08554 894 aa12.36□□□□□ -0.43
VPS53-207ENST00000570510 PSMD5Q16401 504 aa12.36□□□□□ -0.43
VPS53-207ENST00000570510 AXDND1Q5T1B0 1012 aaPredicted RBP12.36□□□□□ -0.43
VPS53-207ENST00000570510 NOTUMQ6P988 496 aa12.36□□□□□ -0.43
VPS53-207ENST00000570510 PDXDC1Q6P996 788 aa12.36□□□□□ -0.43
VPS53-207ENST00000570510 UNQ6494/PRO21346Q6UXR6 183 aa12.36□□□□□ -0.43
VPS53-207ENST00000570510 MAMSTRQ6ZN01 415 aa12.36□□□□□ -0.43
VPS53-207ENST00000570510 NPAS3Q8IXF0 933 aa12.36□□□□□ -0.43
VPS53-207ENST00000570510 RDM1Q8NG50 284 aa12.36□□□□□ -0.43
VPS53-207ENST00000570510 BICD2Q8TD16 824 aa12.36□□□□□ -0.43
VPS53-207ENST00000570510 PSPC1Q8WXF1 523 aaKnown RBP12.36□□□□□ -0.43
VPS53-207ENST00000570510 RABGGTAQ92696 567 aa12.36□□□□□ -0.43
VPS53-207ENST00000570510 IRF7Q92985 503 aa12.36□□□□□ -0.43
VPS53-207ENST00000570510 CCDC136Q96JN2 1154 aa12.36□□□□□ -0.43
VPS53-207ENST00000570510 MBOAT7Q96N66 472 aa12.36□□□□□ -0.43
VPS53-207ENST00000570510 TRMT61BQ9BVS5 477 aaKnown RBP12.36□□□□□ -0.43
VPS53-207ENST00000570510 UNC45AQ9H3U1 944 aa12.36□□□□□ -0.43
VPS53-207ENST00000570510 MYH15Q9Y2K3 1946 aa12.36□□□□□ -0.43
VPS53-207ENST00000570510 COL4A3Q01955 1670 aa12.35□□□□□ -0.43
VPS53-207ENST00000570510 SOBPA7XYQ1 873 aa12.35□□□□□ -0.43
VPS53-207ENST00000570510 C1QTNF9BB2RNN3 333 aa12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms