RNA–Protein interactions for RNA: ENST00000568539.1

SF3B3-212, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-212ENST00000568539 PDZD7Q9H5P4 517 aa9.26□□□□□ -0.93
SF3B3-212ENST00000568539 PTPRHQ9HD43 1115 aa9.26□□□□□ -0.93
SF3B3-212ENST00000568539 AGPAT3Q9NRZ7 376 aa9.26□□□□□ -0.93
SF3B3-212ENST00000568539 TYW1Q9NV66 732 aaKnown RBP9.26□□□□□ -0.93
SF3B3-212ENST00000568539 CTNND2Q9UQB3 1225 aa9.26□□□□□ -0.93
SF3B3-212ENST00000568539 TRAF3IP3Q9Y228 551 aa9.26□□□□□ -0.93
SF3B3-212ENST00000568539 TNFSF13BQ9Y275 285 aa9.26□□□□□ -0.93
SF3B3-212ENST00000568539 STYXL1Q9Y6J8 313 aa9.26□□□□□ -0.93
SF3B3-212ENST00000568539 WDR81Q562E7 1941 aa9.25□□□□□ -0.93
SF3B3-212ENST00000568539 A0A0B4J269 797 aa9.25□□□□□ -0.93
SF3B3-212ENST00000568539 TRIM49BA6NDI0 452 aa9.25□□□□□ -0.93
SF3B3-212ENST00000568539 H0YGN5 161 aa9.25□□□□□ -0.93
SF3B3-212ENST00000568539 PROZP22891 400 aa9.25□□□□□ -0.93
SF3B3-212ENST00000568539 ADSSP30520 456 aa9.25□□□□□ -0.93
SF3B3-212ENST00000568539 SNRPFP62306 86 aaKnown RBP9.25□□□□□ -0.93
SF3B3-212ENST00000568539 LRRC63Q05C16 580 aa9.25□□□□□ -0.93
SF3B3-212ENST00000568539 NCBP1Q09161 790 aaKnown RBP9.25□□□□□ -0.93
SF3B3-212ENST00000568539 DSC3Q14574 896 aa9.25□□□□□ -0.93
SF3B3-212ENST00000568539 EDRF1Q3B7T1 1238 aa9.25□□□□□ -0.93
SF3B3-212ENST00000568539 EEF1DP3Q658K8 133 aa9.25□□□□□ -0.93
SF3B3-212ENST00000568539 ANKRD40Q6AI12 368 aa9.25□□□□□ -0.93
SF3B3-212ENST00000568539 TTI2Q6NXR4 508 aa9.25□□□□□ -0.93
SF3B3-212ENST00000568539 NOTUMQ6P988 496 aa9.25□□□□□ -0.93
SF3B3-212ENST00000568539 FOXR2Q6PJQ5 311 aa9.25□□□□□ -0.93
SF3B3-212ENST00000568539 HS2ST1Q7LGA3 356 aa9.25□□□□□ -0.93
SF3B3-212ENST00000568539 CDR2LQ86X02 465 aaPredicted RBP9.25□□□□□ -0.93
SF3B3-212ENST00000568539 C12orf56Q8IXR9 622 aa9.25□□□□□ -0.93
SF3B3-212ENST00000568539 TMEM199Q8N511 208 aa9.25□□□□□ -0.93
SF3B3-212ENST00000568539 DBF4BQ8NFT6 615 aa9.25□□□□□ -0.93
SF3B3-212ENST00000568539 GOLGA5Q8TBA6 731 aa9.25□□□□□ -0.93
SF3B3-212ENST00000568539 TMEM174Q8WUU8 243 aa9.25□□□□□ -0.93
SF3B3-212ENST00000568539 DPF3Q92784 378 aa9.25□□□□□ -0.93
SF3B3-212ENST00000568539 ZBTB45Q96K62 511 aaPredicted RBP9.25□□□□□ -0.93
SF3B3-212ENST00000568539 DUSP9Q99956 384 aaKnown RBP9.25□□□□□ -0.93
SF3B3-212ENST00000568539 ANP32EQ9BTT0 268 aa9.25□□□□□ -0.93
SF3B3-212ENST00000568539 IFIH1Q9BYX4 1025 aaKnown RBP9.25□□□□□ -0.93
SF3B3-212ENST00000568539 HAPLN2Q9GZV7 340 aa9.25□□□□□ -0.93
SF3B3-212ENST00000568539 CHST12Q9NRB3 414 aa9.25□□□□□ -0.93
SF3B3-212ENST00000568539 CGNQ9P2M7 1197 aaKnown RBP9.25□□□□□ -0.93
SF3B3-212ENST00000568539 PRKAG2Q9UGJ0 569 aa9.25□□□□□ -0.93
SF3B3-212ENST00000568539 RWDD2AQ9UIY3 292 aa9.25□□□□□ -0.93
SF3B3-212ENST00000568539 PIN4Q9Y237 131 aaKnown RBP9.25□□□□□ -0.93
SF3B3-212ENST00000568539 EYSQ5T1H1 3165 aa9.25□□□□□ -0.93
SF3B3-212ENST00000568539 MYH9P35579 1960 aaKnown RBP9.24□□□□□ -0.93
SF3B3-212ENST00000568539 BICDL2A1A5D9 508 aa9.24□□□□□ -0.93
SF3B3-212ENST00000568539 N4BP3O15049 544 aa9.24□□□□□ -0.93
SF3B3-212ENST00000568539 CLIC2O15247 247 aa9.24□□□□□ -0.93
SF3B3-212ENST00000568539 CLDN3O15551 220 aa9.24□□□□□ -0.93
SF3B3-212ENST00000568539 CALUO43852 315 aaPredicted RBP9.24□□□□□ -0.93
SF3B3-212ENST00000568539 MGEA5O60502 916 aa9.24□□□□□ -0.93
SF3B3-212ENST00000568539 CSF2RAP15509 400 aa9.24□□□□□ -0.93
SF3B3-212ENST00000568539 SYN1P17600 705 aa9.24□□□□□ -0.93
SF3B3-212ENST00000568539 GARTP22102 1010 aa9.24□□□□□ -0.93
SF3B3-212ENST00000568539 STX17P56962 302 aa9.24□□□□□ -0.93
SF3B3-212ENST00000568539 MCL1Q07820 350 aa9.24□□□□□ -0.93
SF3B3-212ENST00000568539 MYBPC2Q14324 1141 aa9.24□□□□□ -0.93
SF3B3-212ENST00000568539 NFIL3Q16649 462 aa9.24□□□□□ -0.93
SF3B3-212ENST00000568539 TCTN1Q2MV58 587 aa9.24□□□□□ -0.93
SF3B3-212ENST00000568539 UBXN11Q5T124 520 aa9.24□□□□□ -0.93
SF3B3-212ENST00000568539 SLFN12LQ6IEE8 588 aa9.24□□□□□ -0.93
SF3B3-212ENST00000568539 ARMCX5Q6P1M9 558 aa9.24□□□□□ -0.93
SF3B3-212ENST00000568539 SLC27A1Q6PCB7 646 aa9.24□□□□□ -0.93
SF3B3-212ENST00000568539 MPZL3Q6UWV2 235 aa9.24□□□□□ -0.93
SF3B3-212ENST00000568539 FAM43BQ6ZT52 329 aaPredicted RBP9.24□□□□□ -0.93
SF3B3-212ENST00000568539 DEFB128Q7Z7B8 93 aa9.24□□□□□ -0.93
SF3B3-212ENST00000568539 SLC9A9Q8IVB4 645 aa9.24□□□□□ -0.93
SF3B3-212ENST00000568539 ZC3H3Q8IXZ2 948 aaKnown RBP9.24□□□□□ -0.93
SF3B3-212ENST00000568539 LINC01599Q8WXQ3 324 aa9.24□□□□□ -0.93
SF3B3-212ENST00000568539 SEPT8Q92599 483 aa9.24□□□□□ -0.93
SF3B3-212ENST00000568539 APBB2Q92870 758 aa9.24□□□□□ -0.93
SF3B3-212ENST00000568539 BADQ92934 168 aa9.24□□□□□ -0.93
SF3B3-212ENST00000568539 CCDC51Q96ER9 411 aa9.24□□□□□ -0.93
SF3B3-212ENST00000568539 TSG101Q99816 390 aa9.24□□□□□ -0.93
SF3B3-212ENST00000568539 BPIFA3Q9BQP9 254 aa9.24□□□□□ -0.93
SF3B3-212ENST00000568539 CBWD1Q9BRT8 395 aa9.24□□□□□ -0.93
SF3B3-212ENST00000568539 TCHPQ9BT92 498 aa9.24□□□□□ -0.93
SF3B3-212ENST00000568539 TRAIPQ9BWF2 469 aa9.24□□□□□ -0.93
SF3B3-212ENST00000568539 NAT10Q9H0A0 1025 aaKnown RBP9.24□□□□□ -0.93
SF3B3-212ENST00000568539 CDT1Q9H211 546 aa9.24□□□□□ -0.93
SF3B3-212ENST00000568539 TSPY26PQ9H489 355 aa9.24□□□□□ -0.93
SF3B3-212ENST00000568539 DMAC2Q9NW81 257 aa9.24□□□□□ -0.93
SF3B3-212ENST00000568539 ANKFY1Q9P2R3 1169 aa9.24□□□□□ -0.93
SF3B3-212ENST00000568539 KIAA0391O15091 583 aaKnown RBP9.23□□□□□ -0.93
SF3B3-212ENST00000568539 FAM189A1O60320 539 aa9.23□□□□□ -0.93
SF3B3-212ENST00000568539 CAVIN2O95810 425 aa9.23□□□□□ -0.93
SF3B3-212ENST00000568539 NR3C1P04150 777 aa9.23□□□□□ -0.93
SF3B3-212ENST00000568539 PFKMP08237 780 aa9.23□□□□□ -0.93
SF3B3-212ENST00000568539 MCF2P10911 925 aa9.23□□□□□ -0.93
SF3B3-212ENST00000568539 ZSCAN20P17040 1043 aaPredicted RBP9.23□□□□□ -0.93
SF3B3-212ENST00000568539 ZNF165P49910 485 aa9.23□□□□□ -0.93
SF3B3-212ENST00000568539 FKBP3Q00688 224 aaKnown RBP9.23□□□□□ -0.93
SF3B3-212ENST00000568539 NOLC1Q14978 699 aaKnown RBP eCLIP9.23□□□□□ -0.93
SF3B3-212ENST00000568539 ZNF568Q3ZCX4 644 aa9.23□□□□□ -0.93
SF3B3-212ENST00000568539 SPATA1Q5VX52 437 aa9.23□□□□□ -0.93
SF3B3-212ENST00000568539 CNKSR3Q6P9H4 555 aa9.23□□□□□ -0.93
SF3B3-212ENST00000568539 LRRC55Q6ZSA7 311 aa9.23□□□□□ -0.93
SF3B3-212ENST00000568539 ZBTB33Q86T24 672 aa9.23□□□□□ -0.93
SF3B3-212ENST00000568539 RTN4RL1Q86UN2 441 aaPredicted RBP9.23□□□□□ -0.93
SF3B3-212ENST00000568539 ENOX1Q8TC92 643 aaKnown RBP9.23□□□□□ -0.93
SF3B3-212ENST00000568539 POMGNT1Q8WZA1 660 aa9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms