RNA–Protein interactions for RNA: ENST00000567250.5

SF3B3-208, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 3

Gene SF3B3, Length 1,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-208ENST00000567250 GPR153Q6NV75 609 aa13.33□□□□□ -0.28
SF3B3-208ENST00000567250 TMCO2Q7Z6W1 182 aaPredicted RBP13.33□□□□□ -0.28
SF3B3-208ENST00000567250 ZNF598Q86UK7 904 aaKnown RBP13.33□□□□□ -0.28
SF3B3-208ENST00000567250 CDR2LQ86X02 465 aaPredicted RBP13.33□□□□□ -0.28
SF3B3-208ENST00000567250 SYCP3Q8IZU3 236 aa13.33□□□□□ -0.28
SF3B3-208ENST00000567250 CRIPAKQ8N1N5 446 aa13.33□□□□□ -0.28
SF3B3-208ENST00000567250 URGCPQ8TCY9 931 aa13.33□□□□□ -0.28
SF3B3-208ENST00000567250 SP7Q8TDD2 431 aaPredicted RBP13.33□□□□□ -0.28
SF3B3-208ENST00000567250 TIFAQ96CG3 184 aa13.33□□□□□ -0.28
SF3B3-208ENST00000567250 ZNF689Q96CS4 500 aaPredicted RBP13.33□□□□□ -0.28
SF3B3-208ENST00000567250 EIF2AQ9BY44 585 aaKnown RBP13.33□□□□□ -0.28
SF3B3-208ENST00000567250 RC3H2Q9HBD1 1191 aaKnown RBP13.33□□□□□ -0.28
SF3B3-208ENST00000567250 TOPORSQ9NS56 1045 aaPredicted RBP13.33□□□□□ -0.28
SF3B3-208ENST00000567250 TBKBP1A7MCY6 615 aa13.32□□□□□ -0.28
SF3B3-208ENST00000567250 RHOBTB3O94955 611 aa13.32□□□□□ -0.28
SF3B3-208ENST00000567250 PRR29P0C7W0 189 aa13.32□□□□□ -0.28
SF3B3-208ENST00000567250 MYBP10242 640 aa13.32□□□□□ -0.28
SF3B3-208ENST00000567250 PROZP22891 400 aa13.32□□□□□ -0.28
SF3B3-208ENST00000567250 YARSP54577 528 aaKnown RBP13.32□□□□□ -0.28
SF3B3-208ENST00000567250 KMT5BQ4FZB7 885 aa13.32□□□□□ -0.28
SF3B3-208ENST00000567250 ZC2HC1CQ53FD0 456 aaPredicted RBP13.32□□□□□ -0.28
SF3B3-208ENST00000567250 EEF1DP3Q658K8 133 aa13.32□□□□□ -0.28
SF3B3-208ENST00000567250 MRPL10Q7Z7H8 261 aaKnown RBP13.32□□□□□ -0.28
SF3B3-208ENST00000567250 FIBCD1Q8N539 461 aa13.32□□□□□ -0.28
SF3B3-208ENST00000567250 SMARCE1Q969G3 411 aa13.32□□□□□ -0.28
SF3B3-208ENST00000567250 SAMD11Q96NU1 681 aa13.32□□□□□ -0.28
SF3B3-208ENST00000567250 GSDMAQ96QA5 445 aa13.32□□□□□ -0.28
SF3B3-208ENST00000567250 RPS6KC1Q96S38 1066 aa13.32□□□□□ -0.28
SF3B3-208ENST00000567250 CCDC94Q9BW85 323 aaPredicted RBP13.32□□□□□ -0.28
SF3B3-208ENST00000567250 STRA6Q9BX79 667 aa13.32□□□□□ -0.28
SF3B3-208ENST00000567250 CDT1Q9H211 546 aa13.32□□□□□ -0.28
SF3B3-208ENST00000567250 NXF3Q9H4D5 531 aaKnown RBP13.32□□□□□ -0.28
SF3B3-208ENST00000567250 GIT1Q9Y2X7 761 aa13.32□□□□□ -0.28
SF3B3-208ENST00000567250 TTLL13PA6NNM8 815 aa13.31□□□□□ -0.28
SF3B3-208ENST00000567250 KLRC4O43908 158 aa13.31□□□□□ -0.28
SF3B3-208ENST00000567250 MBD3O95983 291 aa13.31□□□□□ -0.28
SF3B3-208ENST00000567250 FGFR1P11362 822 aa13.31□□□□□ -0.28
SF3B3-208ENST00000567250 HARSP12081 509 aaKnown RBP13.31□□□□□ -0.28
SF3B3-208ENST00000567250 PBX2P40425 430 aa13.31□□□□□ -0.28
SF3B3-208ENST00000567250 GRM5P41594 1212 aa13.31□□□□□ -0.28
SF3B3-208ENST00000567250 CASP5P51878 434 aa13.31□□□□□ -0.28
SF3B3-208ENST00000567250 MCL1Q07820 350 aa13.31□□□□□ -0.28
SF3B3-208ENST00000567250 PNOCQ13519 176 aa13.31□□□□□ -0.28
SF3B3-208ENST00000567250 HSP90AA2PQ14568 343 aaPredicted RBP13.31□□□□□ -0.28
SF3B3-208ENST00000567250 SMG8Q8ND04 991 aaKnown RBP13.31□□□□□ -0.28
SF3B3-208ENST00000567250 HELQQ8TDG4 1101 aa13.31□□□□□ -0.28
SF3B3-208ENST00000567250 LPPQ93052 612 aa13.31□□□□□ -0.28
SF3B3-208ENST00000567250 APOL6Q9BWW8 343 aa13.31□□□□□ -0.28
SF3B3-208ENST00000567250 NKX2-4Q9H2Z4 354 aa13.31□□□□□ -0.28
SF3B3-208ENST00000567250 PTPRHQ9HD43 1115 aa13.31□□□□□ -0.28
SF3B3-208ENST00000567250 SLC39A2Q9NP94 309 aa13.31□□□□□ -0.28
SF3B3-208ENST00000567250 AAASQ9NRG9 546 aa13.31□□□□□ -0.28
SF3B3-208ENST00000567250 KANSL3Q9P2N6 904 aa13.31□□□□□ -0.28
SF3B3-208ENST00000567250 PARP2Q9UGN5 583 aa13.31□□□□□ -0.28
SF3B3-208ENST00000567250 YBX2Q9Y2T7 364 aaKnown RBP13.31□□□□□ -0.28
SF3B3-208ENST00000567250 CHD9Q3L8U1 2897 aa13.31□□□□□ -0.28
SF3B3-208ENST00000567250 LINC01553A4QN01 128 aa13.3□□□□□ -0.28
SF3B3-208ENST00000567250 SOX1O00570 391 aaPredicted RBP13.3□□□□□ -0.28
SF3B3-208ENST00000567250 KIAA0391O15091 583 aaKnown RBP13.3□□□□□ -0.28
SF3B3-208ENST00000567250 PRPF6O94906 941 aaKnown RBP13.3□□□□□ -0.28
SF3B3-208ENST00000567250 PTMSP20962 102 aa13.3□□□□□ -0.28
SF3B3-208ENST00000567250 MLH1P40692 756 aa13.3□□□□□ -0.28
SF3B3-208ENST00000567250 SNRPFP62306 86 aaKnown RBP13.3□□□□□ -0.28
SF3B3-208ENST00000567250 BMT2Q1RMZ1 405 aa13.3□□□□□ -0.28
SF3B3-208ENST00000567250 PAN2Q504Q3 1202 aaKnown RBP13.3□□□□□ -0.28
SF3B3-208ENST00000567250 NOMO2Q5JPE7 1267 aa13.3□□□□□ -0.28
SF3B3-208ENST00000567250 CLLU1OSQ5K130 101 aa13.3□□□□□ -0.28
SF3B3-208ENST00000567250 SPOUT1Q5T280 376 aaKnown RBP13.3□□□□□ -0.28
SF3B3-208ENST00000567250 AGMOQ6ZNB7 445 aa13.3□□□□□ -0.28
SF3B3-208ENST00000567250 EPM2AIP1Q7L775 607 aaPredicted RBP13.3□□□□□ -0.28
SF3B3-208ENST00000567250 HS2ST1Q7LGA3 356 aa13.3□□□□□ -0.28
SF3B3-208ENST00000567250 ZBTB33Q86T24 672 aa13.3□□□□□ -0.28
SF3B3-208ENST00000567250 GOLGA5Q8TBA6 731 aa13.3□□□□□ -0.28
SF3B3-208ENST00000567250 TGS1Q96RS0 853 aaKnown RBP13.3□□□□□ -0.28
SF3B3-208ENST00000567250 MSTO1Q9BUK6 570 aa13.3□□□□□ -0.28
SF3B3-208ENST00000567250 FGFBP2Q9BYJ0 223 aa13.3□□□□□ -0.28
SF3B3-208ENST00000567250 GBP3Q9H0R5 595 aa13.3□□□□□ -0.28
SF3B3-208ENST00000567250 LMBRD1Q9NUN5 540 aa13.3□□□□□ -0.28
SF3B3-208ENST00000567250 CGNQ9P2M7 1197 aaKnown RBP13.3□□□□□ -0.28
SF3B3-208ENST00000567250 INPP5FQ9Y2H2 1132 aa13.3□□□□□ -0.28
SF3B3-208ENST00000567250 USP20Q9Y2K6 914 aa13.3□□□□□ -0.28
SF3B3-208ENST00000567250 HES2Q9Y543 173 aa13.3□□□□□ -0.28
SF3B3-208ENST00000567250 ANK1P16157 1881 aa13.29□□□□□ -0.28
SF3B3-208ENST00000567250 TRIP11Q15643 1979 aa13.29□□□□□ -0.28
SF3B3-208ENST00000567250 LCHNA4D1U4 455 aa13.29□□□□□ -0.28
SF3B3-208ENST00000567250 RBAK-RBAKDNI3L0D1 243 aa13.29□□□□□ -0.28
SF3B3-208ENST00000567250 ABLIM1O14639 778 aa13.29□□□□□ -0.28
SF3B3-208ENST00000567250 OGTO15294 1046 aa13.29□□□□□ -0.28
SF3B3-208ENST00000567250 INPPL1O15357 1258 aa13.29□□□□□ -0.28
SF3B3-208ENST00000567250 RECQL4O94761 1208 aa13.29□□□□□ -0.28
SF3B3-208ENST00000567250 LDHAP00338 332 aaKnown RBP13.29□□□□□ -0.28
SF3B3-208ENST00000567250 MYOGP15173 224 aa13.29□□□□□ -0.28
SF3B3-208ENST00000567250 LAG3P18627 525 aa13.29□□□□□ -0.28
SF3B3-208ENST00000567250 GARTP22102 1010 aa13.29□□□□□ -0.28
SF3B3-208ENST00000567250 FXR1P51114 621 aaKnown RBP eCLIP13.29□□□□□ -0.286e-7■□□□□ 11.1
SF3B3-208ENST00000567250 RNASELQ05823 741 aaKnown RBP13.29□□□□□ -0.28
SF3B3-208ENST00000567250 GRIK3Q13003 919 aa13.29□□□□□ -0.28
SF3B3-208ENST00000567250 ARMCX5Q6P1M9 558 aa13.29□□□□□ -0.28
SF3B3-208ENST00000567250 THNSL1Q8IYQ7 743 aa13.29□□□□□ -0.28
SF3B3-208ENST00000567250 KIAA0895Q8NCT3 520 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms