RNA–Protein interactions for RNA: ENST00000566472.1

CLN3-223, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 551 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-223ENST00000566472 SSC5DA1L4H1 1573 aa6.74□□□□□ -1.33
CLN3-223ENST00000566472 PHIPQ8WWQ0 1821 aa6.73□□□□□ -1.33
CLN3-223ENST00000566472 BRCA1P38398 1863 aaKnown RBP6.73□□□□□ -1.33
CLN3-223ENST00000566472 GOLGA6L10A6NI86 522 aa6.73□□□□□ -1.33
CLN3-223ENST00000566472 ZNF233A6NK53 670 aa6.73□□□□□ -1.33
CLN3-223ENST00000566472 TISP43B9A030 160 aa6.73□□□□□ -1.33
CLN3-223ENST00000566472 ANKRD63C9JTQ0 380 aa6.73□□□□□ -1.33
CLN3-223ENST00000566472 EIF3HO15372 352 aaKnown RBP eCLIP6.73□□□□□ -1.33
CLN3-223ENST00000566472 ZNF862O60290 1169 aa6.73□□□□□ -1.33
CLN3-223ENST00000566472 PHF2O75151 1096 aa6.73□□□□□ -1.33
CLN3-223ENST00000566472 ERLIN2O94905 339 aa6.73□□□□□ -1.33
CLN3-223ENST00000566472 ATG7O95352 703 aa6.73□□□□□ -1.33
CLN3-223ENST00000566472 LDHAP00338 332 aaKnown RBP6.73□□□□□ -1.33
CLN3-223ENST00000566472 FGGP02679 453 aa6.73□□□□□ -1.33
CLN3-223ENST00000566472 FTLP02792 175 aaPredicted RBP6.73□□□□□ -1.33
CLN3-223ENST00000566472 FAM153BP0C7A2 387 aa6.73□□□□□ -1.33
CLN3-223ENST00000566472 MYBL1P10243 752 aa6.73□□□□□ -1.33
CLN3-223ENST00000566472 CHRNB2P17787 502 aa6.73□□□□□ -1.33
CLN3-223ENST00000566472 RFC5P40937 340 aa6.73□□□□□ -1.33
CLN3-223ENST00000566472 NAMPTP43490 491 aa6.73□□□□□ -1.33
CLN3-223ENST00000566472 EIF3BP55884 814 aaKnown RBP6.73□□□□□ -1.33
CLN3-223ENST00000566472 BPIFB4P59827 614 aa6.73□□□□□ -1.33
CLN3-223ENST00000566472 ACTR2P61160 394 aa6.73□□□□□ -1.33
CLN3-223ENST00000566472 CLDN10P78369 228 aa6.73□□□□□ -1.33
CLN3-223ENST00000566472 FMO1Q01740 532 aa6.73□□□□□ -1.33
CLN3-223ENST00000566472 PRKCEQ02156 737 aa6.73□□□□□ -1.33
CLN3-223ENST00000566472 BIRC3Q13489 604 aa6.73□□□□□ -1.33
CLN3-223ENST00000566472 HLTFQ14527 1009 aaKnown RBP eCLIP6.73□□□□□ -1.33
CLN3-223ENST00000566472 TMEM132BQ14DG7 1078 aa6.73□□□□□ -1.33
CLN3-223ENST00000566472 PSMD6Q15008 389 aa6.73□□□□□ -1.33
CLN3-223ENST00000566472 CYP1B1Q16678 543 aa6.73□□□□□ -1.33
CLN3-223ENST00000566472 FAM153CQ494X1 144 aa6.73□□□□□ -1.33
CLN3-223ENST00000566472 TBC1D10BQ4KMP7 808 aaPredicted RBP6.73□□□□□ -1.33
CLN3-223ENST00000566472 TTMPQ5BVD1 217 aa6.73□□□□□ -1.33
CLN3-223ENST00000566472 DCAF12L1Q5VU92 463 aa6.73□□□□□ -1.33
CLN3-223ENST00000566472 SLFN12LQ6IEE8 588 aa6.73□□□□□ -1.33
CLN3-223ENST00000566472 ABHD15Q6UXT9 468 aa6.73□□□□□ -1.33
CLN3-223ENST00000566472 LRRC31Q6UY01 552 aa6.73□□□□□ -1.33
CLN3-223ENST00000566472 TRIM72Q6ZMU5 477 aa6.73□□□□□ -1.33
CLN3-223ENST00000566472 RUFY4Q6ZNE9 571 aa6.73□□□□□ -1.33
CLN3-223ENST00000566472 C15orf39Q6ZRI6 1047 aa6.73□□□□□ -1.33
CLN3-223ENST00000566472 CROCCP2Q86T23 111 aa6.73□□□□□ -1.33
CLN3-223ENST00000566472 NOP9Q86U38 636 aaKnown RBP6.73□□□□□ -1.33
CLN3-223ENST00000566472 PPM1KQ8N3J5 372 aa6.73□□□□□ -1.33
CLN3-223ENST00000566472 SLC20A1Q8WUM9 679 aa6.73□□□□□ -1.33
CLN3-223ENST00000566472 MAIP1Q8WWC4 291 aa6.73□□□□□ -1.33
CLN3-223ENST00000566472 IFT81Q8WYA0 676 aa6.73□□□□□ -1.33
CLN3-223ENST00000566472 RIN2Q8WYP3 895 aaPredicted RBP6.73□□□□□ -1.33
CLN3-223ENST00000566472 PIK3R5Q8WYR1 880 aa6.73□□□□□ -1.33
CLN3-223ENST00000566472 BSNDQ8WZ55 320 aa6.73□□□□□ -1.33
CLN3-223ENST00000566472 POMGNT1Q8WZA1 660 aa6.73□□□□□ -1.33
CLN3-223ENST00000566472 CD101Q93033 1021 aa6.73□□□□□ -1.33
CLN3-223ENST00000566472 ATP6V1G3Q96LB4 118 aa6.73□□□□□ -1.33
CLN3-223ENST00000566472 WRNIP1Q96S55 665 aa6.73□□□□□ -1.33
CLN3-223ENST00000566472 PLVAPQ9BX97 442 aa6.73□□□□□ -1.33
CLN3-223ENST00000566472 CAPS2Q9BXY5 557 aa6.73□□□□□ -1.33
CLN3-223ENST00000566472 DDX47Q9H0S4 455 aaKnown RBP6.73□□□□□ -1.33
CLN3-223ENST00000566472 POLR3FQ9H1D9 316 aaPredicted RBP6.73□□□□□ -1.33
CLN3-223ENST00000566472 GOLPH3Q9H4A6 298 aa6.73□□□□□ -1.33
CLN3-223ENST00000566472 A1CFQ9NQ94 594 aaKnown RBP6.73□□□□□ -1.33
CLN3-223ENST00000566472 XPNPEP1Q9NQW7 623 aa6.73□□□□□ -1.33
CLN3-223ENST00000566472 CYP26B1Q9NR63 512 aa6.73□□□□□ -1.33
CLN3-223ENST00000566472 HOXC10Q9NYD6 342 aa6.73□□□□□ -1.33
CLN3-223ENST00000566472 CYP39A1Q9NYL5 469 aa6.73□□□□□ -1.33
CLN3-223ENST00000566472 TAS2R14Q9NYV8 317 aa6.73□□□□□ -1.33
CLN3-223ENST00000566472 PARP2Q9UGN5 583 aa6.73□□□□□ -1.33
CLN3-223ENST00000566472 SEPT9Q9UHD8 586 aaPredicted RBP6.73□□□□□ -1.33
CLN3-223ENST00000566472 FAM153AQ9UHL3 310 aa6.73□□□□□ -1.33
CLN3-223ENST00000566472 COG5Q9UP83 839 aa6.73□□□□□ -1.33
CLN3-223ENST00000566472 RIPK3Q9Y572 518 aa6.73□□□□□ -1.33
CLN3-223ENST00000566472 ALG6Q9Y672 507 aa6.73□□□□□ -1.33
CLN3-223ENST00000566472 PARP14Q460N5 1801 aa6.73□□□□□ -1.33
CLN3-223ENST00000566472 IGKV6D-21A0A0A0MT36 114 aa6.72□□□□□ -1.33
CLN3-223ENST00000566472 ESYT3A0FGR9 886 aa6.72□□□□□ -1.33
CLN3-223ENST00000566472 GOLGA8IPA6NC78 632 aa6.72□□□□□ -1.33
CLN3-223ENST00000566472 ZSCAN5CA6NGD5 496 aaPredicted RBP6.72□□□□□ -1.33
CLN3-223ENST00000566472 GOLGA8JA6NMD2 632 aa6.72□□□□□ -1.33
CLN3-223ENST00000566472 SPDYE16A6NNV3 312 aaPredicted RBP6.72□□□□□ -1.33
CLN3-223ENST00000566472 TULP2O00295 520 aa6.72□□□□□ -1.33
CLN3-223ENST00000566472 PODXLO00592 558 aa6.72□□□□□ -1.33
CLN3-223ENST00000566472 HNRNPDLO14979 420 aaKnown RBP6.72□□□□□ -1.33
CLN3-223ENST00000566472 PPFIA2O75334 1257 aa6.72□□□□□ -1.33
CLN3-223ENST00000566472 RGS20O76081 388 aa6.72□□□□□ -1.33
CLN3-223ENST00000566472 SGPL1O95470 568 aa6.72□□□□□ -1.33
CLN3-223ENST00000566472 EGFRP00533 1210 aa6.72□□□□□ -1.33
CLN3-223ENST00000566472 OATP04181 439 aa6.72□□□□□ -1.33
CLN3-223ENST00000566472 ITGA4P13612 1032 aa6.72□□□□□ -1.33
CLN3-223ENST00000566472 CYP11B1P15538 503 aa6.72□□□□□ -1.33
CLN3-223ENST00000566472 CTNNA1P35221 906 aaKnown RBP6.72□□□□□ -1.33
CLN3-223ENST00000566472 COPB2P35606 906 aa6.72□□□□□ -1.33
CLN3-223ENST00000566472 HSD17B3P37058 310 aa6.72□□□□□ -1.33
CLN3-223ENST00000566472 SLC1A1P43005 524 aa6.72□□□□□ -1.33
CLN3-223ENST00000566472 FNTAP49354 379 aa6.72□□□□□ -1.33
CLN3-223ENST00000566472 LIG4P49917 911 aa6.72□□□□□ -1.33
CLN3-223ENST00000566472 GUCY2FP51841 1108 aa6.72□□□□□ -1.33
CLN3-223ENST00000566472 AP3M2P53677 418 aa6.72□□□□□ -1.33
CLN3-223ENST00000566472 HMGCS2P54868 508 aa6.72□□□□□ -1.33
CLN3-223ENST00000566472 MRPS25P82663 173 aaKnown RBP6.72□□□□□ -1.33
CLN3-223ENST00000566472 DR1Q01658 176 aa6.72□□□□□ -1.33
CLN3-223ENST00000566472 MAP2K1Q02750 393 aaPredicted RBP6.72□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms