RNA–Protein interactions for RNA: ENST00000565140.5

CLN3-214, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,225 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-214ENST00000565140 NT5C3AQ9H0P0 336 aa20.27■□□□□ 0.84
CLN3-214ENST00000565140 PARP2Q9UGN5 583 aa20.27■□□□□ 0.84
CLN3-214ENST00000565140 CLIC4Q9Y696 253 aa20.27■□□□□ 0.84
CLN3-214ENST00000565140 MYH15Q9Y2K3 1946 aa20.26■□□□□ 0.83
CLN3-214ENST00000565140 CCDC169A6NNP5 214 aa20.26■□□□□ 0.83
CLN3-214ENST00000565140 K7ERI5 159 aa20.26■□□□□ 0.83
CLN3-214ENST00000565140 CLASP2O75122 1294 aaKnown RBP20.26■□□□□ 0.83
CLN3-214ENST00000565140 SSBP05455 408 aaKnown RBP eCLIP20.26■□□□□ 0.83
CLN3-214ENST00000565140 CTSAP10619 480 aa20.26■□□□□ 0.83
CLN3-214ENST00000565140 SLC12A3P55017 1021 aa20.26■□□□□ 0.83
CLN3-214ENST00000565140 RAD51AP2Q09MP3 1159 aa20.26■□□□□ 0.83
CLN3-214ENST00000565140 TMEM132AQ24JP5 1023 aa20.26■□□□□ 0.83
CLN3-214ENST00000565140 GJD3Q8N144 294 aa20.26■□□□□ 0.83
CLN3-214ENST00000565140 KCTD17Q8N5Z5 321 aa20.26■□□□□ 0.83
CLN3-214ENST00000565140 AK8Q96MA6 479 aa20.26■□□□□ 0.83
CLN3-214ENST00000565140 CXCL16Q9H2A7 254 aa20.26■□□□□ 0.83
CLN3-214ENST00000565140 MARCH5Q9NX47 278 aa20.26■□□□□ 0.83
CLN3-214ENST00000565140 SNTG2Q9NY99 539 aa20.26■□□□□ 0.83
CLN3-214ENST00000565140 PRG3Q9Y2Y8 225 aaPredicted RBP20.26■□□□□ 0.83
CLN3-214ENST00000565140 F8W810 466 aa20.25■□□□□ 0.83
CLN3-214ENST00000565140 BMP15O95972 392 aa20.25■□□□□ 0.83
CLN3-214ENST00000565140 PLA2G4BP0C869 781 aa20.25■□□□□ 0.83
CLN3-214ENST00000565140 GUCY2CP25092 1073 aa20.25■□□□□ 0.83
CLN3-214ENST00000565140 CA8P35219 290 aa20.25■□□□□ 0.83
CLN3-214ENST00000565140 OR1G1P47890 313 aa20.25■□□□□ 0.83
CLN3-214ENST00000565140 ZP2Q05996 745 aa20.25■□□□□ 0.83
CLN3-214ENST00000565140 PTPAQ15257 358 aa20.25■□□□□ 0.83
CLN3-214ENST00000565140 ARSHQ5FYA8 562 aa20.25■□□□□ 0.83
CLN3-214ENST00000565140 TAS1R3Q7RTX0 852 aa20.25■□□□□ 0.83
CLN3-214ENST00000565140 CDK5RAP3Q96JB5 506 aa20.25■□□□□ 0.83
CLN3-214ENST00000565140 DRC1Q96MC2 740 aa20.25■□□□□ 0.83
CLN3-214ENST00000565140 PRKAG3Q9UGI9 489 aa20.25■□□□□ 0.83
CLN3-214ENST00000565140 MTMR6Q9Y217 621 aa20.25■□□□□ 0.83
CLN3-214ENST00000565140 IRAK3Q9Y616 596 aa20.25■□□□□ 0.83
CLN3-214ENST00000565140 CITO14578 2027 aa20.24■□□□□ 0.83
CLN3-214ENST00000565140 NPHP3-ACAD11A0A0J9YXS1 232 aa20.24■□□□□ 0.83
CLN3-214ENST00000565140 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP20.24■□□□□ 0.83
CLN3-214ENST00000565140 FSD2A1L4K1 749 aa20.24■□□□□ 0.83
CLN3-214ENST00000565140 C19orf67A6NJJ6 358 aa20.24■□□□□ 0.83
CLN3-214ENST00000565140 SSTR3P32745 418 aaPredicted RBP20.24■□□□□ 0.83
CLN3-214ENST00000565140 UBA7P41226 1012 aa20.24■□□□□ 0.83
CLN3-214ENST00000565140 DMP1Q13316 513 aaPredicted RBP20.24■□□□□ 0.83
CLN3-214ENST00000565140 TAS1R1Q7RTX1 841 aa20.24■□□□□ 0.83
CLN3-214ENST00000565140 ADHFE1Q8IWW8 467 aa20.24■□□□□ 0.83
CLN3-214ENST00000565140 SNX21Q969T3 373 aa20.24■□□□□ 0.83
CLN3-214ENST00000565140 EPHX3Q9H6B9 360 aa20.24■□□□□ 0.83
CLN3-214ENST00000565140 KMT5AQ9NQR1 393 aa20.24■□□□□ 0.83
CLN3-214ENST00000565140 ARHGAP28Q9P2N2 729 aa20.24■□□□□ 0.83
CLN3-214ENST00000565140 USP15Q9Y4E8 981 aaPredicted RBP20.24■□□□□ 0.83
CLN3-214ENST00000565140 SLC16A4O15374 487 aa20.23■□□□□ 0.83
CLN3-214ENST00000565140 EFEMP2O95967 443 aa20.23■□□□□ 0.83
CLN3-214ENST00000565140 LONP1P36776 959 aaKnown RBP20.23■□□□□ 0.83
CLN3-214ENST00000565140 BMS1Q14692 1282 aaKnown RBP20.23■□□□□ 0.83
CLN3-214ENST00000565140 PTPN14Q15678 1187 aa20.23■□□□□ 0.83
CLN3-214ENST00000565140 ATF7IP2Q5U623 682 aa20.23■□□□□ 0.83
CLN3-214ENST00000565140 ANKRD54Q6NXT1 300 aa20.23■□□□□ 0.83
CLN3-214ENST00000565140 SYCE2Q6PIF2 218 aa20.23■□□□□ 0.83
CLN3-214ENST00000565140 RABGGTAQ92696 567 aa20.23■□□□□ 0.83
CLN3-214ENST00000565140 ACO2Q99798 780 aaKnown RBP20.23■□□□□ 0.83
CLN3-214ENST00000565140 ADPGKQ9BRR6 497 aa20.23■□□□□ 0.83
CLN3-214ENST00000565140 NTPCRQ9BSD7 190 aaKnown RBP20.23■□□□□ 0.83
CLN3-214ENST00000565140 TIPINQ9BVW5 301 aa20.23■□□□□ 0.83
CLN3-214ENST00000565140 S1PR5Q9H228 398 aa20.23■□□□□ 0.83
CLN3-214ENST00000565140 TMEM134Q9H6X4 195 aa20.23■□□□□ 0.83
CLN3-214ENST00000565140 C17orf75Q9HAS0 396 aa20.23■□□□□ 0.83
CLN3-214ENST00000565140 BLOC1S4Q9NUP1 217 aa20.23■□□□□ 0.83
CLN3-214ENST00000565140 CACNG4Q9UBN1 327 aa20.23■□□□□ 0.83
CLN3-214ENST00000565140 HCFC2Q9Y5Z7 792 aa20.23■□□□□ 0.83
CLN3-214ENST00000565140 ZMYM2Q9UBW7 1377 aa20.22■□□□□ 0.83
CLN3-214ENST00000565140 PLXNA3P51805 1871 aa20.22■□□□□ 0.83
CLN3-214ENST00000565140 PTGESO14684 152 aa20.22■□□□□ 0.83
CLN3-214ENST00000565140 SLC26A4O43511 780 aa20.22■□□□□ 0.83
CLN3-214ENST00000565140 LILRB3O75022 631 aa20.22■□□□□ 0.83
CLN3-214ENST00000565140 RECQL4O94761 1208 aa20.22■□□□□ 0.83
CLN3-214ENST00000565140 MARCKSP29966 332 aaPredicted RBP20.22■□□□□ 0.83
CLN3-214ENST00000565140 CACNB1Q02641 598 aaPredicted RBP20.22■□□□□ 0.83
CLN3-214ENST00000565140 GRIK3Q13003 919 aa20.22■□□□□ 0.83
CLN3-214ENST00000565140 KARSQ15046 597 aaKnown RBP20.22■□□□□ 0.83
CLN3-214ENST00000565140 SPECC1Q5M775 1068 aa20.22■□□□□ 0.83
CLN3-214ENST00000565140 USP49Q70CQ1 688 aa20.22■□□□□ 0.83
CLN3-214ENST00000565140 CALML4Q96GE6 196 aa20.22■□□□□ 0.83
CLN3-214ENST00000565140 APOL5Q9BWW9 433 aa20.22■□□□□ 0.83
CLN3-214ENST00000565140 TNFSF13BQ9Y275 285 aa20.22■□□□□ 0.83
CLN3-214ENST00000565140 GDAQ9Y2T3 454 aa20.22■□□□□ 0.83
CLN3-214ENST00000565140 PHLPP2Q6ZVD8 1323 aa20.22■□□□□ 0.83
CLN3-214ENST00000565140 STX6O43752 255 aa20.21■□□□□ 0.83
CLN3-214ENST00000565140 PLS3P13797 630 aa20.21■□□□□ 0.83
CLN3-214ENST00000565140 PLCG1P19174 1290 aa20.21■□□□□ 0.83
CLN3-214ENST00000565140 CEBPZQ03701 1054 aaKnown RBP20.21■□□□□ 0.83
CLN3-214ENST00000565140 GIT2Q14161 759 aa20.21■□□□□ 0.83
CLN3-214ENST00000565140 DHX8Q14562 1220 aaKnown RBP20.21■□□□□ 0.83
CLN3-214ENST00000565140 DCAF4L1Q3SXM0 396 aa20.21■□□□□ 0.83
CLN3-214ENST00000565140 SLC22A17Q8WUG5 538 aa20.21■□□□□ 0.83
CLN3-214ENST00000565140 SUSD6Q92537 303 aa20.21■□□□□ 0.83
CLN3-214ENST00000565140 EPSTI1Q96J88 318 aa20.21■□□□□ 0.83
CLN3-214ENST00000565140 RPS6KC1Q96S38 1066 aa20.21■□□□□ 0.83
CLN3-214ENST00000565140 PAAF1Q9BRP4 392 aa20.21■□□□□ 0.83
CLN3-214ENST00000565140 TARS2Q9BW92 718 aaKnown RBP20.21■□□□□ 0.83
CLN3-214ENST00000565140 PTPRHQ9HD43 1115 aa20.21■□□□□ 0.83
CLN3-214ENST00000565140 KCND2Q9NZV8 630 aa20.21■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 59.6 ms