RNA–Protein interactions for RNA: ENST00000563400.1

VPS35P1-201, Transcript of VPS35, retromer complex component pseudogene 1, humanhuman

BASIC

Gene VPS35P1, Length 1,518 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35P1-201ENST00000563400 LGALS16A8MUM7 142 aa5.87□□□□□ -1.47
VPS35P1-201ENST00000563400 F8W8V4 182 aa5.87□□□□□ -1.47
VPS35P1-201ENST00000563400 RTCAO00442 366 aaKnown RBP5.87□□□□□ -1.47
VPS35P1-201ENST00000563400 ACKR2O00590 384 aa5.87□□□□□ -1.47
VPS35P1-201ENST00000563400 TRIM38O00635 465 aa5.87□□□□□ -1.47
VPS35P1-201ENST00000563400 HOXC11O43248 304 aaPredicted RBP5.87□□□□□ -1.47
VPS35P1-201ENST00000563400 KDM1AO60341 852 aa5.87□□□□□ -1.47
VPS35P1-201ENST00000563400 NAT1P18440 290 aa5.87□□□□□ -1.47
VPS35P1-201ENST00000563400 CTSSP25774 331 aa5.87□□□□□ -1.47
VPS35P1-201ENST00000563400 LSP1P33241 339 aa5.87□□□□□ -1.47
VPS35P1-201ENST00000563400 MRE11P49959 708 aa5.87□□□□□ -1.47
VPS35P1-201ENST00000563400 CLNS1AP54105 237 aaKnown RBP5.87□□□□□ -1.47
VPS35P1-201ENST00000563400 ZNF445P59923 1031 aa5.87□□□□□ -1.47
VPS35P1-201ENST00000563400 GPR85P60893 370 aa5.87□□□□□ -1.47
VPS35P1-201ENST00000563400 PHC1P78364 1004 aa5.87□□□□□ -1.47
VPS35P1-201ENST00000563400 IKBKEQ14164 716 aa5.87□□□□□ -1.47
VPS35P1-201ENST00000563400 SNX17Q15036 470 aa5.87□□□□□ -1.47
VPS35P1-201ENST00000563400 SURF1Q15526 300 aa5.87□□□□□ -1.47
VPS35P1-201ENST00000563400 ZACNQ401N2 412 aa5.87□□□□□ -1.47
VPS35P1-201ENST00000563400 MFSD6Q6ZSS7 791 aa5.87□□□□□ -1.47
VPS35P1-201ENST00000563400 ILDR2Q71H61 639 aa5.87□□□□□ -1.47
VPS35P1-201ENST00000563400 DAAM2Q86T65 1068 aa5.87□□□□□ -1.47
VPS35P1-201ENST00000563400 OTUD6BQ8N6M0 293 aa5.87□□□□□ -1.47
VPS35P1-201ENST00000563400 C2orf69Q8N8R5 385 aa5.87□□□□□ -1.47
VPS35P1-201ENST00000563400 OR8H1Q8NGG4 311 aa5.87□□□□□ -1.47
VPS35P1-201ENST00000563400 HTRA1Q92743 480 aa5.87□□□□□ -1.47
VPS35P1-201ENST00000563400 ERCC4Q92889 916 aaPredicted RBP5.87□□□□□ -1.47
VPS35P1-201ENST00000563400 APIPQ96GX9 242 aa5.87□□□□□ -1.47
VPS35P1-201ENST00000563400 CCDC74BQ96LY2 380 aa5.87□□□□□ -1.47
VPS35P1-201ENST00000563400 ELF4Q99607 663 aaPredicted RBP5.87□□□□□ -1.47
VPS35P1-201ENST00000563400 BAG1Q99933 345 aaPredicted RBP5.87□□□□□ -1.47
VPS35P1-201ENST00000563400 TREX2Q9BQ50 279 aaPredicted RBP5.87□□□□□ -1.47
VPS35P1-201ENST00000563400 CNPPD1Q9BV87 410 aa5.87□□□□□ -1.47
VPS35P1-201ENST00000563400 LACRTQ9GZZ8 138 aa5.87□□□□□ -1.47
VPS35P1-201ENST00000563400 BTBD1Q9H0C5 482 aa5.87□□□□□ -1.47
VPS35P1-201ENST00000563400 TMEFF2Q9UIK5 374 aaPredicted RBP5.87□□□□□ -1.47
VPS35P1-201ENST00000563400 SLC13A4Q9UKG4 626 aa5.87□□□□□ -1.47
VPS35P1-201ENST00000563400 EDARQ9UNE0 448 aa5.87□□□□□ -1.47
VPS35P1-201ENST00000563400 SBNO1A3KN83 1393 aa5.87□□□□□ -1.47
VPS35P1-201ENST00000563400 IFT172Q9UG01 1749 aa5.86□□□□□ -1.47
VPS35P1-201ENST00000563400 HSPA4LO95757 839 aa5.86□□□□□ -1.47
VPS35P1-201ENST00000563400 GSNP06396 782 aa5.86□□□□□ -1.47
VPS35P1-201ENST00000563400 APOA4P06727 396 aa5.86□□□□□ -1.47
VPS35P1-201ENST00000563400 CTSBP07858 339 aa5.86□□□□□ -1.47
VPS35P1-201ENST00000563400 HSPA5P11021 654 aaKnown RBP5.86□□□□□ -1.47
VPS35P1-201ENST00000563400 ITGA4P13612 1032 aa5.86□□□□□ -1.47
VPS35P1-201ENST00000563400 NAP1L1P55209 391 aaKnown RBP5.86□□□□□ -1.47
VPS35P1-201ENST00000563400 GSTM4Q03013 218 aa5.86□□□□□ -1.47
VPS35P1-201ENST00000563400 PAK1Q13153 545 aa5.86□□□□□ -1.47
VPS35P1-201ENST00000563400 AUHQ13825 339 aaKnown RBP5.86□□□□□ -1.47
VPS35P1-201ENST00000563400 SLC35G1Q2M3R5 365 aa5.86□□□□□ -1.47
VPS35P1-201ENST00000563400 CCDC158Q5M9N0 1113 aa5.86□□□□□ -1.47
VPS35P1-201ENST00000563400 SHISA2Q6UWI4 295 aa5.86□□□□□ -1.47
VPS35P1-201ENST00000563400 OR10H5Q8NGA6 315 aa5.86□□□□□ -1.47
VPS35P1-201ENST00000563400 PLBD2Q8NHP8 589 aa5.86□□□□□ -1.47
VPS35P1-201ENST00000563400 BRI3BPQ8WY22 251 aa5.86□□□□□ -1.47
VPS35P1-201ENST00000563400 CENPTQ96BT3 561 aa5.86□□□□□ -1.47
VPS35P1-201ENST00000563400 WNT10AQ9GZT5 417 aa5.86□□□□□ -1.47
VPS35P1-201ENST00000563400 MRPL18Q9H0U6 180 aaKnown RBP5.86□□□□□ -1.47
VPS35P1-201ENST00000563400 CCDC68Q9H2F9 335 aa5.86□□□□□ -1.47
VPS35P1-201ENST00000563400 TOMM22Q9NS69 142 aa5.86□□□□□ -1.47
VPS35P1-201ENST00000563400 PA2G4Q9UQ80 394 aaKnown RBP5.86□□□□□ -1.47
VPS35P1-201ENST00000563400 LTBP4Q8N2S1 1624 aa5.86□□□□□ -1.47
VPS35P1-201ENST00000563400 ACEP12821 1306 aa5.86□□□□□ -1.47
VPS35P1-201ENST00000563400 C1orf167Q5SNV9 1468 aa5.85□□□□□ -1.47
VPS35P1-201ENST00000563400 KTN1Q86UP2 1357 aaKnown RBP5.85□□□□□ -1.47
VPS35P1-201ENST00000563400 H7C0S8 307 aa5.85□□□□□ -1.47
VPS35P1-201ENST00000563400 DLL1O00548 723 aa5.85□□□□□ -1.47
VPS35P1-201ENST00000563400 DVL2O14641 736 aa5.85□□□□□ -1.47
VPS35P1-201ENST00000563400 APOL1O14791 398 aa5.85□□□□□ -1.47
VPS35P1-201ENST00000563400 NPC1O15118 1278 aa5.85□□□□□ -1.47
VPS35P1-201ENST00000563400 SOAT2O75908 522 aa5.85□□□□□ -1.47
VPS35P1-201ENST00000563400 THP07101 528 aa5.85□□□□□ -1.47
VPS35P1-201ENST00000563400 KIF5BP33176 963 aa5.85□□□□□ -1.47
VPS35P1-201ENST00000563400 ATP6V1E1P36543 226 aa5.85□□□□□ -1.47
VPS35P1-201ENST00000563400 TNNT3P45378 269 aaPredicted RBP5.85□□□□□ -1.47
VPS35P1-201ENST00000563400 CDC16Q13042 620 aa5.85□□□□□ -1.47
VPS35P1-201ENST00000563400 SMC1AQ14683 1233 aaKnown RBP5.85□□□□□ -1.47
VPS35P1-201ENST00000563400 PLCL1Q15111 1095 aa5.85□□□□□ -1.47
VPS35P1-201ENST00000563400 DPY19L1Q2PZI1 675 aa5.85□□□□□ -1.47
VPS35P1-201ENST00000563400 DNAJB7Q7Z6W7 309 aaPredicted RBP5.85□□□□□ -1.47
VPS35P1-201ENST00000563400 MOGAT3Q86VF5 341 aa5.85□□□□□ -1.47
VPS35P1-201ENST00000563400 IQCA1Q86XH1 822 aa5.85□□□□□ -1.47
VPS35P1-201ENST00000563400 PPIL6Q8IXY8 311 aa5.85□□□□□ -1.47
VPS35P1-201ENST00000563400 CEP57L1Q8IYX8 460 aa5.85□□□□□ -1.47
VPS35P1-201ENST00000563400 TRMT2AQ8IZ69 625 aaKnown RBP5.85□□□□□ -1.47
VPS35P1-201ENST00000563400 NAT8LQ8N9F0 302 aa5.85□□□□□ -1.47
VPS35P1-201ENST00000563400 ZNF610Q8N9Z0 462 aa5.85□□□□□ -1.47
VPS35P1-201ENST00000563400 MSANTD4Q8NCY6 345 aa5.85□□□□□ -1.47
VPS35P1-201ENST00000563400 DDX54Q8TDD1 881 aaKnown RBP5.85□□□□□ -1.47
VPS35P1-201ENST00000563400 CFAP53Q96M91 514 aa5.85□□□□□ -1.47
VPS35P1-201ENST00000563400 SLF1Q9BQI6 1058 aa5.85□□□□□ -1.47
VPS35P1-201ENST00000563400 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP5.85□□□□□ -1.47
VPS35P1-201ENST00000563400 GPRC5CQ9NQ84 441 aa5.85□□□□□ -1.47
VPS35P1-201ENST00000563400 ST6GALNAC1Q9NSC7 600 aaPredicted RBP5.85□□□□□ -1.47
VPS35P1-201ENST00000563400 KIF17Q9P2E2 1029 aa5.85□□□□□ -1.47
VPS35P1-201ENST00000563400 ORC3Q9UBD5 711 aaPredicted RBP5.85□□□□□ -1.47
VPS35P1-201ENST00000563400 TBK1Q9UHD2 729 aa5.85□□□□□ -1.47
VPS35P1-201ENST00000563400 CBLCQ9ULV8 474 aa5.85□□□□□ -1.47
VPS35P1-201ENST00000563400 RABL2BQ9UNT1 228 aa5.85□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms