RNA–Protein interactions for RNA: ENST00000562670.5

CLK3-209, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 544 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-209ENST00000562670 VAMP7P51809 220 aa15.16■□□□□ 0.02
CLK3-209ENST00000562670 RBL2Q08999 1139 aa15.16■□□□□ 0.02
CLK3-209ENST00000562670 MGAT3Q09327 533 aa15.16■□□□□ 0.02
CLK3-209ENST00000562670 PSMD6Q15008 389 aa15.16■□□□□ 0.02
CLK3-209ENST00000562670 MTFR1Q15390 333 aa15.16■□□□□ 0.02
CLK3-209ENST00000562670 SYCP1Q15431 976 aa15.16■□□□□ 0.02
CLK3-209ENST00000562670 ZNF568Q3ZCX4 644 aa15.16■□□□□ 0.02
CLK3-209ENST00000562670 DCAF17Q5H9S7 520 aaPredicted RBP15.16■□□□□ 0.02
CLK3-209ENST00000562670 FAM47CQ5HY64 1035 aa15.16■□□□□ 0.02
CLK3-209ENST00000562670 BRSK2Q8IWQ3 736 aa15.16■□□□□ 0.02
CLK3-209ENST00000562670 PARD3BQ8TEW8 1205 aa15.16■□□□□ 0.02
CLK3-209ENST00000562670 SAAL1Q96ER3 474 aa15.16■□□□□ 0.02
CLK3-209ENST00000562670 OSMRQ99650 979 aa15.16■□□□□ 0.02
CLK3-209ENST00000562670 CELF4Q9BZC1 486 aaKnown RBP15.16■□□□□ 0.02
CLK3-209ENST00000562670 EDEM3Q9BZQ6 932 aa15.16■□□□□ 0.02
CLK3-209ENST00000562670 TTYH3Q9C0H2 523 aa15.16■□□□□ 0.02
CLK3-209ENST00000562670 PDZD7Q9H5P4 517 aa15.16■□□□□ 0.02
CLK3-209ENST00000562670 STARD7Q9NQZ5 370 aa15.16■□□□□ 0.02
CLK3-209ENST00000562670 AGPAT5Q9NUQ2 364 aa15.16■□□□□ 0.02
CLK3-209ENST00000562670 TRIP12Q14669 1992 aaPredicted RBP15.16■□□□□ 0.02
CLK3-209ENST00000562670 PES1O00541 588 aaKnown RBP15.15■□□□□ 0.02
CLK3-209ENST00000562670 B4GALT5O43286 388 aa15.15■□□□□ 0.02
CLK3-209ENST00000562670 GYPCP04921 128 aa15.15■□□□□ 0.02
CLK3-209ENST00000562670 TPM1P09493 284 aa15.15■□□□□ 0.02
CLK3-209ENST00000562670 HSPA1AP0DMV8 641 aaKnown RBP15.15■□□□□ 0.02
CLK3-209ENST00000562670 HSPA1BP0DMV9 641 aaKnown RBP15.15■□□□□ 0.02
CLK3-209ENST00000562670 ARF4P18085 180 aaPredicted RBP15.15■□□□□ 0.02
CLK3-209ENST00000562670 FMO5P49326 533 aa15.15■□□□□ 0.02
CLK3-209ENST00000562670 NCBP1Q09161 790 aaKnown RBP15.15■□□□□ 0.02
CLK3-209ENST00000562670 ARID5BQ14865 1188 aa15.15■□□□□ 0.02
CLK3-209ENST00000562670 PTGISQ16647 500 aa15.15■□□□□ 0.02
CLK3-209ENST00000562670 TRIM71Q2Q1W2 868 aaKnown RBP15.15■□□□□ 0.02
CLK3-209ENST00000562670 DCAF4L1Q3SXM0 396 aa15.15■□□□□ 0.02
CLK3-209ENST00000562670 FAM26DQ5JW98 314 aa15.15■□□□□ 0.02
CLK3-209ENST00000562670 TCERG1LQ5VWI1 586 aa15.15■□□□□ 0.02
CLK3-209ENST00000562670 CRELD2Q6UXH1 353 aaPredicted RBP15.15■□□□□ 0.02
CLK3-209ENST00000562670 FAM43BQ6ZT52 329 aaPredicted RBP15.15■□□□□ 0.02
CLK3-209ENST00000562670 CNGA4Q8IV77 575 aa15.15■□□□□ 0.02
CLK3-209ENST00000562670 TRIM44Q96DX7 344 aaPredicted RBP15.15■□□□□ 0.02
CLK3-209ENST00000562670 DEFB118Q96PH6 123 aa15.15■□□□□ 0.02
CLK3-209ENST00000562670 FAM213AQ9BRX8 229 aa15.15■□□□□ 0.02
CLK3-209ENST00000562670 SENP6Q9GZR1 1112 aaPredicted RBP15.15■□□□□ 0.02
CLK3-209ENST00000562670 RNF208Q9H0X6 261 aa15.15■□□□□ 0.02
CLK3-209ENST00000562670 CDT1Q9H211 546 aa15.15■□□□□ 0.02
CLK3-209ENST00000562670 PLCB1Q9NQ66 1216 aa15.15■□□□□ 0.02
CLK3-209ENST00000562670 FBXL5Q9UKA1 691 aa15.15■□□□□ 0.02
CLK3-209ENST00000562670 SQORQ9Y6N5 450 aa15.15■□□□□ 0.02
CLK3-209ENST00000562670 ARVCFO00192 962 aa15.14■□□□□ 0.01
CLK3-209ENST00000562670 MYCNP04198 464 aaPredicted RBP15.14■□□□□ 0.01
CLK3-209ENST00000562670 CDK7P50613 346 aa15.14■□□□□ 0.01
CLK3-209ENST00000562670 SURF1Q15526 300 aa15.14■□□□□ 0.01
CLK3-209ENST00000562670 C1orf220Q5T0J3 134 aa15.14■□□□□ 0.01
CLK3-209ENST00000562670 NOTUMQ6P988 496 aa15.14■□□□□ 0.01
CLK3-209ENST00000562670 GBP6Q6ZN66 633 aa15.14■□□□□ 0.01
CLK3-209ENST00000562670 CATSPER4Q7RTX7 472 aa15.14■□□□□ 0.01
CLK3-209ENST00000562670 CCDC186Q7Z3E2 898 aa15.14■□□□□ 0.01
CLK3-209ENST00000562670 PPFIBP1Q86W92 1011 aa15.14■□□□□ 0.01
CLK3-209ENST00000562670 ZSWIM2Q8NEG5 633 aa15.14■□□□□ 0.01
CLK3-209ENST00000562670 PLEKHO2Q8TD55 490 aa15.14■□□□□ 0.01
CLK3-209ENST00000562670 PPP1R13LQ8WUF5 828 aa15.14■□□□□ 0.01
CLK3-209ENST00000562670 ZNF668Q96K58 619 aaPredicted RBP15.14■□□□□ 0.01
CLK3-209ENST00000562670 ZBTB45Q96K62 511 aaPredicted RBP15.14■□□□□ 0.01
CLK3-209ENST00000562670 ADPGKQ9BRR6 497 aa15.14■□□□□ 0.01
CLK3-209ENST00000562670 RBAKQ9NYW8 714 aaPredicted RBP15.14■□□□□ 0.01
CLK3-209ENST00000562670 CPSF3Q9UKF6 684 aaKnown RBP15.14■□□□□ 0.01
CLK3-209ENST00000562670 USP20Q9Y2K6 914 aa15.14■□□□□ 0.01
CLK3-209ENST00000562670 CDY2AQ9Y6F7 541 aa15.14■□□□□ 0.01
CLK3-209ENST00000562670 GOLGA8IPA6NC78 632 aa15.13■□□□□ 0.01
CLK3-209ENST00000562670 GOLGA8JA6NMD2 632 aa15.13■□□□□ 0.01
CLK3-209ENST00000562670 MFAP3LO75121 409 aa15.13■□□□□ 0.01
CLK3-209ENST00000562670 TRIM49P0CI25 452 aa15.13■□□□□ 0.01
CLK3-209ENST00000562670 TRIM49CP0CI26 452 aa15.13■□□□□ 0.01
CLK3-209ENST00000562670 RFX1P22670 979 aa15.13■□□□□ 0.01
CLK3-209ENST00000562670 FECHP22830 423 aa15.13■□□□□ 0.01
CLK3-209ENST00000562670 HOXA11P31270 313 aaPredicted RBP15.13■□□□□ 0.01
CLK3-209ENST00000562670 MATR3P43243 847 aaKnown RBP eCLIP15.13■□□□□ 0.01
CLK3-209ENST00000562670 MXI1P50539 228 aa15.13■□□□□ 0.01
CLK3-209ENST00000562670 LBX1P52954 281 aa15.13■□□□□ 0.01
CLK3-209ENST00000562670 AP3M2P53677 418 aa15.13■□□□□ 0.01
CLK3-209ENST00000562670 MYL7Q01449 175 aa15.13■□□□□ 0.01
CLK3-209ENST00000562670 TMEM62Q0P6H9 643 aa15.13■□□□□ 0.01
CLK3-209ENST00000562670 CETN1Q12798 172 aa15.13■□□□□ 0.01
CLK3-209ENST00000562670 EXOC3L4Q17RC7 722 aa15.13■□□□□ 0.01
CLK3-209ENST00000562670 RALGAPA2Q2PPJ7 1873 aa15.13■□□□□ 0.01
CLK3-209ENST00000562670 EEF1DP3Q658K8 133 aa15.13■□□□□ 0.01
CLK3-209ENST00000562670 SLC27A1Q6PCB7 646 aa15.13■□□□□ 0.01
CLK3-209ENST00000562670 ANKLE1Q8NAG6 615 aa15.13■□□□□ 0.01
CLK3-209ENST00000562670 USP38Q8NB14 1042 aa15.13■□□□□ 0.01
CLK3-209ENST00000562670 RDH13Q8NBN7 331 aa15.13■□□□□ 0.01
CLK3-209ENST00000562670 CCDC112Q8NEF3 446 aa15.13■□□□□ 0.01
CLK3-209ENST00000562670 TMEM40Q8WWA1 233 aa15.13■□□□□ 0.01
CLK3-209ENST00000562670 DHX38Q92620 1227 aaKnown RBP15.13■□□□□ 0.01
CLK3-209ENST00000562670 WNT8BQ93098 351 aa15.13■□□□□ 0.01
CLK3-209ENST00000562670 VTI1AQ96AJ9 217 aa15.13■□□□□ 0.01
CLK3-209ENST00000562670 PPP1R16BQ96T49 567 aa15.13■□□□□ 0.01
CLK3-209ENST00000562670 TCHPQ9BT92 498 aa15.13■□□□□ 0.01
CLK3-209ENST00000562670 CDHR5Q9HBB8 845 aa15.13■□□□□ 0.01
CLK3-209ENST00000562670 TMEM8AQ9HCN3 771 aa15.13■□□□□ 0.01
CLK3-209ENST00000562670 CAPN11Q9UMQ6 739 aa15.13■□□□□ 0.01
CLK3-209ENST00000562670 COQ4Q9Y3A0 265 aa15.13■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms