RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 STAG3L1P0CL83 205 aa9.92□□□□□ -0.82
VPS39-205ENST00000562258 SLC9A1P19634 815 aa9.92□□□□□ -0.82
VPS39-205ENST00000562258 EIF4BP23588 611 aaKnown RBP9.92□□□□□ -0.82
VPS39-205ENST00000562258 GRIK1P39086 918 aa9.92□□□□□ -0.82
VPS39-205ENST00000562258 ZNF200P98182 395 aaPredicted RBP9.92□□□□□ -0.82
VPS39-205ENST00000562258 KCNA1Q09470 495 aa9.92□□□□□ -0.82
VPS39-205ENST00000562258 FSTL1Q12841 308 aa9.92□□□□□ -0.82
VPS39-205ENST00000562258 NOL9Q5SY16 702 aaKnown RBP9.92□□□□□ -0.82
VPS39-205ENST00000562258 C4orf50Q6ZRC1 276 aa9.92□□□□□ -0.82
VPS39-205ENST00000562258 BHMTQ93088 406 aa9.92□□□□□ -0.82
VPS39-205ENST00000562258 PPP2R3CQ969Q6 453 aa9.92□□□□□ -0.82
VPS39-205ENST00000562258 MRFAP1L1Q96HT8 127 aa9.92□□□□□ -0.82
VPS39-205ENST00000562258 ZNF560Q96MR9 790 aa9.92□□□□□ -0.82
VPS39-205ENST00000562258 INPP4AQ96PE3 977 aaPredicted RBP9.92□□□□□ -0.82
VPS39-205ENST00000562258 GAD1Q99259 594 aa9.92□□□□□ -0.82
VPS39-205ENST00000562258 ASIC3Q9UHC3 531 aa9.92□□□□□ -0.82
VPS39-205ENST00000562258 C11orf97A0A1B0GVM6 126 aaPredicted RBP9.91□□□□□ -0.82
VPS39-205ENST00000562258 SPATA31C2B4DYI2 1134 aa9.91□□□□□ -0.82
VPS39-205ENST00000562258 OGTO15294 1046 aa9.91□□□□□ -0.82
VPS39-205ENST00000562258 PSMD10O75832 226 aa9.91□□□□□ -0.82
VPS39-205ENST00000562258 NAMPTP43490 491 aa9.91□□□□□ -0.82
VPS39-205ENST00000562258 KRT17Q04695 432 aa9.91□□□□□ -0.82
VPS39-205ENST00000562258 UGCGQ16739 394 aa9.91□□□□□ -0.82
VPS39-205ENST00000562258 CASC4Q6P4E1 433 aa9.91□□□□□ -0.82
VPS39-205ENST00000562258 CCDC105Q8IYK2 499 aa9.91□□□□□ -0.82
VPS39-205ENST00000562258 KIAA0319LQ8IZA0 1049 aa9.91□□□□□ -0.82
VPS39-205ENST00000562258 CCNYQ8ND76 341 aa9.91□□□□□ -0.82
VPS39-205ENST00000562258 APPL2Q8NEU8 664 aa9.91□□□□□ -0.82
VPS39-205ENST00000562258 CLEC4DQ8WXI8 215 aa9.91□□□□□ -0.82
VPS39-205ENST00000562258 LRRC45Q96CN5 670 aa9.91□□□□□ -0.82
VPS39-205ENST00000562258 TIPINQ9BVW5 301 aa9.91□□□□□ -0.82
VPS39-205ENST00000562258 TSGA10Q9BZW7 698 aa9.91□□□□□ -0.82
VPS39-205ENST00000562258 MTMR12Q9C0I1 747 aa9.91□□□□□ -0.82
VPS39-205ENST00000562258 KIF9Q9HAQ2 790 aa9.91□□□□□ -0.82
VPS39-205ENST00000562258 ABI2Q9NYB9 513 aaPredicted RBP9.91□□□□□ -0.82
VPS39-205ENST00000562258 KCND2Q9NZV8 630 aa9.91□□□□□ -0.82
VPS39-205ENST00000562258 PTCH2Q9Y6C5 1203 aa9.91□□□□□ -0.82
VPS39-205ENST00000562258 CDY2AQ9Y6F7 541 aa9.91□□□□□ -0.82
VPS39-205ENST00000562258 SOWAHDA6NJG2 315 aa9.91□□□□□ -0.82
VPS39-205ENST00000562258 A6NJR5 290 aa9.91□□□□□ -0.82
VPS39-205ENST00000562258 PIK3CDO00329 1044 aa9.91□□□□□ -0.82
VPS39-205ENST00000562258 CLTAP09496 248 aa9.91□□□□□ -0.82
VPS39-205ENST00000562258 SYN1P17600 705 aa9.91□□□□□ -0.82
VPS39-205ENST00000562258 ZBED6P86452 979 aa9.91□□□□□ -0.82
VPS39-205ENST00000562258 TMCO3Q6UWJ1 677 aa9.91□□□□□ -0.82
VPS39-205ENST00000562258 INTS2Q9H0H0 1204 aaKnown RBP9.91□□□□□ -0.82
VPS39-205ENST00000562258 RNF186Q9NXI6 227 aa9.91□□□□□ -0.82
VPS39-205ENST00000562258 LRRC53A6NM62 1247 aa9.91□□□□□ -0.82
VPS39-205ENST00000562258 LGALS16A8MUM7 142 aa9.91□□□□□ -0.82
VPS39-205ENST00000562258 CCNE2O96020 404 aa9.91□□□□□ -0.82
VPS39-205ENST00000562258 HLA-DRAP01903 254 aa9.91□□□□□ -0.82
VPS39-205ENST00000562258 SLC4A1P02730 911 aa9.91□□□□□ -0.82
VPS39-205ENST00000562258 HMBSP08397 361 aa9.91□□□□□ -0.82
VPS39-205ENST00000562258 PNMA6AP0CW24 399 aaPredicted RBP9.91□□□□□ -0.82
VPS39-205ENST00000562258 SMPD1P17405 629 aa9.91□□□□□ -0.82
VPS39-205ENST00000562258 GNA15P30679 374 aa9.91□□□□□ -0.82
VPS39-205ENST00000562258 CKAP4Q07065 602 aaKnown RBP9.91□□□□□ -0.82
VPS39-205ENST00000562258 CALCOCO2Q13137 446 aa9.91□□□□□ -0.82
VPS39-205ENST00000562258 CST9Q5W186 159 aa9.91□□□□□ -0.82
VPS39-205ENST00000562258 TMEM35BQ8NCS4 154 aa9.91□□□□□ -0.82
VPS39-205ENST00000562258 GADD45GIP1Q8TAE8 222 aaPredicted RBP9.91□□□□□ -0.82
VPS39-205ENST00000562258 TRPC7Q9HCX4 862 aa9.91□□□□□ -0.82
VPS39-205ENST00000562258 PCSK1NQ9UHG2 260 aa9.91□□□□□ -0.82
VPS39-205ENST00000562258 A0A087X0B3 334 aa9.9□□□□□ -0.82
VPS39-205ENST00000562258 TREHO43280 583 aa9.9□□□□□ -0.82
VPS39-205ENST00000562258 GAS2O43903 313 aaKnown RBP9.9□□□□□ -0.82
VPS39-205ENST00000562258 FARP2O94887 1054 aaPredicted RBP9.9□□□□□ -0.82
VPS39-205ENST00000562258 LCP1P13796 627 aa9.9□□□□□ -0.82
VPS39-205ENST00000562258 CD52P31358 61 aa9.9□□□□□ -0.82
VPS39-205ENST00000562258 ATP11AP98196 1134 aa9.9□□□□□ -0.82
VPS39-205ENST00000562258 VEPH1Q14D04 833 aa9.9□□□□□ -0.82
VPS39-205ENST00000562258 RWDD4Q6NW29 188 aaKnown RBP9.9□□□□□ -0.82
VPS39-205ENST00000562258 NPLOC4Q8TAT6 608 aa9.9□□□□□ -0.82
VPS39-205ENST00000562258 DYDC1Q8WWB3 177 aa9.9□□□□□ -0.82
VPS39-205ENST00000562258 HPDLQ96IR7 371 aa9.9□□□□□ -0.82
VPS39-205ENST00000562258 C12orf42Q96LP6 360 aa9.9□□□□□ -0.82
VPS39-205ENST00000562258 ZNF512Q96ME7 567 aaPredicted RBP9.9□□□□□ -0.82
VPS39-205ENST00000562258 PHLPP2Q6ZVD8 1323 aa9.9□□□□□ -0.82
VPS39-205ENST00000562258 ADAMTS3O15072 1205 aa9.9□□□□□ -0.82
VPS39-205ENST00000562258 SEPT4O43236 478 aa9.9□□□□□ -0.82
VPS39-205ENST00000562258 GRAP2O75791 330 aa9.9□□□□□ -0.82
VPS39-205ENST00000562258 CXCR5P32302 372 aa9.9□□□□□ -0.82
VPS39-205ENST00000562258 MAP2K2P36507 400 aa9.9□□□□□ -0.82
VPS39-205ENST00000562258 ELMSAN1Q6PJG2 1045 aa9.9□□□□□ -0.82
VPS39-205ENST00000562258 ZNF720Q7Z2F6 126 aa9.9□□□□□ -0.82
VPS39-205ENST00000562258 ELMOD1Q8N336 334 aa9.9□□□□□ -0.82
VPS39-205ENST00000562258 SLAIN1Q8ND83 568 aa9.9□□□□□ -0.82
VPS39-205ENST00000562258 NAPGQ99747 312 aaPredicted RBP9.9□□□□□ -0.82
VPS39-205ENST00000562258 HIPK3Q9H422 1215 aa9.9□□□□□ -0.82
VPS39-205ENST00000562258 NWD2Q9ULI1 1742 aa9.9□□□□□ -0.82
VPS39-205ENST00000562258 TTC26A0AVF1 554 aa9.9□□□□□ -0.82
VPS39-205ENST00000562258 FSD2A1L4K1 749 aa9.9□□□□□ -0.82
VPS39-205ENST00000562258 TYW5A2RUC4 315 aaKnown RBP9.9□□□□□ -0.82
VPS39-205ENST00000562258 THP07101 528 aa9.9□□□□□ -0.82
VPS39-205ENST00000562258 CYP3A4P08684 503 aa9.9□□□□□ -0.82
VPS39-205ENST00000562258 HSD17B4P51659 736 aa9.9□□□□□ -0.82
VPS39-205ENST00000562258 GUCY2FP51841 1108 aa9.9□□□□□ -0.82
VPS39-205ENST00000562258 LDLRAD1Q5T700 205 aa9.9□□□□□ -0.82
VPS39-205ENST00000562258 SPATA2LQ8IUW3 424 aaPredicted RBP9.9□□□□□ -0.82
VPS39-205ENST00000562258 GLIS3Q8NEA6 775 aa9.9□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms