RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 ANKLE1Q8NAG6 615 aa14.26□□□□□ -0.13
CLK3-206ENST00000562078 TTC8Q8TAM2 541 aa14.26□□□□□ -0.13
CLK3-206ENST00000562078 MGARPQ8TDB4 240 aa14.26□□□□□ -0.13
CLK3-206ENST00000562078 SNX29Q8TEQ0 813 aa14.26□□□□□ -0.13
CLK3-206ENST00000562078 SCFD2Q8WU76 684 aa14.26□□□□□ -0.13
CLK3-206ENST00000562078 CCDC97Q96F63 343 aaPredicted RBP14.26□□□□□ -0.13
CLK3-206ENST00000562078 UIMC1Q96RL1 719 aa14.26□□□□□ -0.13
CLK3-206ENST00000562078 RAB34Q9BZG1 259 aa14.26□□□□□ -0.13
CLK3-206ENST00000562078 CCDC113Q9H0I3 377 aa14.26□□□□□ -0.13
CLK3-206ENST00000562078 EPB41L4BQ9H329 900 aa14.26□□□□□ -0.13
CLK3-206ENST00000562078 BLOC1S4Q9NUP1 217 aa14.26□□□□□ -0.13
CLK3-206ENST00000562078 LNPEPQ9UIQ6 1025 aa14.26□□□□□ -0.13
CLK3-206ENST00000562078 TTI1O43156 1089 aa14.26□□□□□ -0.13
CLK3-206ENST00000562078 CEP104O60308 925 aa14.26□□□□□ -0.13
CLK3-206ENST00000562078 ITGA4P13612 1032 aa14.26□□□□□ -0.13
CLK3-206ENST00000562078 SESN3P58005 492 aa14.26□□□□□ -0.13
CLK3-206ENST00000562078 FAM47EQ6ZV65 393 aa14.26□□□□□ -0.13
CLK3-206ENST00000562078 PNMA5Q96PV4 448 aa14.26□□□□□ -0.13
CLK3-206ENST00000562078 RAB3IPQ96QF0 476 aaPredicted RBP14.26□□□□□ -0.13
CLK3-206ENST00000562078 C7orf25Q9BPX7 421 aa14.26□□□□□ -0.13
CLK3-206ENST00000562078 MMRN2Q9H8L6 949 aa14.26□□□□□ -0.13
CLK3-206ENST00000562078 NMRK1Q9NWW6 199 aa14.26□□□□□ -0.13
CLK3-206ENST00000562078 hCG_2014768A0A024R1R8 64 aa14.25□□□□□ -0.13
CLK3-206ENST00000562078 FAM200BP0CF97 657 aa14.25□□□□□ -0.13
CLK3-206ENST00000562078 FCER1AP12319 257 aa14.25□□□□□ -0.13
CLK3-206ENST00000562078 TAL1P17542 331 aaPredicted RBP14.25□□□□□ -0.13
CLK3-206ENST00000562078 CD151P48509 253 aa14.25□□□□□ -0.13
CLK3-206ENST00000562078 EIF3BP55884 814 aaKnown RBP14.25□□□□□ -0.13
CLK3-206ENST00000562078 MPP3Q13368 585 aa14.25□□□□□ -0.13
CLK3-206ENST00000562078 USH1GQ495M9 461 aa14.25□□□□□ -0.13
CLK3-206ENST00000562078 UBAP2Q5T6F2 1119 aaKnown RBP14.25□□□□□ -0.13
CLK3-206ENST00000562078 FAM13CQ8NE31 585 aa14.25□□□□□ -0.13
CLK3-206ENST00000562078 GMCL1P1Q8NEA9 526 aa14.25□□□□□ -0.13
CLK3-206ENST00000562078 HAS1Q92839 578 aa14.25□□□□□ -0.13
CLK3-206ENST00000562078 HPS3Q969F9 1004 aa14.25□□□□□ -0.13
CLK3-206ENST00000562078 TMEM237Q96Q45 408 aa14.25□□□□□ -0.13
CLK3-206ENST00000562078 NUDT12Q9BQG2 462 aa14.25□□□□□ -0.13
CLK3-206ENST00000562078 HACL1Q9UJ83 578 aa14.25□□□□□ -0.13
CLK3-206ENST00000562078 RBM47A0AV96 593 aaKnown RBP14.25□□□□□ -0.13
CLK3-206ENST00000562078 RGS16O15492 202 aaPredicted RBP14.25□□□□□ -0.13
CLK3-206ENST00000562078 MARCH6O60337 910 aa14.25□□□□□ -0.13
CLK3-206ENST00000562078 ENTPD5O75356 428 aa14.25□□□□□ -0.13
CLK3-206ENST00000562078 UNC5CO95185 931 aa14.25□□□□□ -0.13
CLK3-206ENST00000562078 GSTA2P09210 222 aa14.25□□□□□ -0.13
CLK3-206ENST00000562078 USP46P62068 366 aa14.25□□□□□ -0.13
CLK3-206ENST00000562078 AMPD3Q01432 767 aa14.25□□□□□ -0.13
CLK3-206ENST00000562078 MGAT5Q09328 741 aa14.25□□□□□ -0.13
CLK3-206ENST00000562078 STK4Q13043 487 aa14.25□□□□□ -0.13
CLK3-206ENST00000562078 RASA3Q14644 834 aa14.25□□□□□ -0.13
CLK3-206ENST00000562078 CNGA2Q16280 664 aa14.25□□□□□ -0.13
CLK3-206ENST00000562078 TDRD12Q587J7 1177 aaKnown RBP14.25□□□□□ -0.13
CLK3-206ENST00000562078 ANKRD40Q6AI12 368 aa14.25□□□□□ -0.13
CLK3-206ENST00000562078 RBBP8NLQ8NC74 664 aaPredicted RBP14.25□□□□□ -0.13
CLK3-206ENST00000562078 UHMK1Q8TAS1 419 aaKnown RBP14.25□□□□□ -0.13
CLK3-206ENST00000562078 PTPRN2Q92932 1015 aa14.25□□□□□ -0.13
CLK3-206ENST00000562078 ZNF333Q96JL9 665 aa14.25□□□□□ -0.13
CLK3-206ENST00000562078 STK17AQ9UEE5 414 aa14.25□□□□□ -0.13
CLK3-206ENST00000562078 ASTN2O75129 1339 aaPredicted RBP14.25□□□□□ -0.13
CLK3-206ENST00000562078 A0A1W2PRG0 241 aa14.24□□□□□ -0.13
CLK3-206ENST00000562078 GJB6O95452 261 aa14.24□□□□□ -0.13
CLK3-206ENST00000562078 PENKP01210 267 aaPredicted RBP14.24□□□□□ -0.13
CLK3-206ENST00000562078 DESP17661 470 aa14.24□□□□□ -0.13
CLK3-206ENST00000562078 SLCO1A2P46721 670 aa14.24□□□□□ -0.13
CLK3-206ENST00000562078 NAB2Q15742 525 aa14.24□□□□□ -0.13
CLK3-206ENST00000562078 CNPY1Q3B7I2 92 aa14.24□□□□□ -0.13
CLK3-206ENST00000562078 Q4G0T1 1027 aa14.24□□□□□ -0.13
CLK3-206ENST00000562078 KRT79Q5XKE5 535 aa14.24□□□□□ -0.13
CLK3-206ENST00000562078 SV2BQ7L1I2 683 aa14.24□□□□□ -0.13
CLK3-206ENST00000562078 LARP4BQ92615 738 aaKnown RBP14.24□□□□□ -0.13
CLK3-206ENST00000562078 TAF4BQ92750 862 aa14.24□□□□□ -0.13
CLK3-206ENST00000562078 AZIN2Q96A70 460 aa14.24□□□□□ -0.13
CLK3-206ENST00000562078 PGM2Q96G03 612 aa14.24□□□□□ -0.13
CLK3-206ENST00000562078 GMCL1Q96IK5 515 aa14.24□□□□□ -0.13
CLK3-206ENST00000562078 GBP5Q96PP8 586 aa14.24□□□□□ -0.13
CLK3-206ENST00000562078 PACSIN1Q9BY11 444 aa14.24□□□□□ -0.13
CLK3-206ENST00000562078 ANO3Q9BYT9 981 aa14.24□□□□□ -0.13
CLK3-206ENST00000562078 TRIM7Q9C029 511 aa14.24□□□□□ -0.13
CLK3-206ENST00000562078 MLXIPLQ9NP71 852 aa14.24□□□□□ -0.13
CLK3-206ENST00000562078 GPRC5DQ9NZD1 345 aa14.24□□□□□ -0.13
CLK3-206ENST00000562078 SIK3Q9Y2K2 1263 aa14.24□□□□□ -0.13
CLK3-206ENST00000562078 ARL2BPQ9Y2Y0 163 aa14.24□□□□□ -0.13
CLK3-206ENST00000562078 MYMKA6NI61 221 aa14.24□□□□□ -0.13
CLK3-206ENST00000562078 NVLO15381 856 aaKnown RBP14.24□□□□□ -0.13
CLK3-206ENST00000562078 ATP9AO75110 1047 aa14.24□□□□□ -0.13
CLK3-206ENST00000562078 GNA14O95837 355 aa14.24□□□□□ -0.13
CLK3-206ENST00000562078 AFPP02771 609 aaKnown RBP14.24□□□□□ -0.13
CLK3-206ENST00000562078 SYDE2Q5VT97 1194 aa14.24□□□□□ -0.13
CLK3-206ENST00000562078 KCNK18Q7Z418 384 aa14.24□□□□□ -0.13
CLK3-206ENST00000562078 ENDOVQ8N8Q3 282 aaKnown RBP14.24□□□□□ -0.13
CLK3-206ENST00000562078 GLT8D2Q9H1C3 349 aa14.24□□□□□ -0.13
CLK3-206ENST00000562078 TMCO1Q9UM00 188 aa14.24□□□□□ -0.13
CLK3-206ENST00000562078 BZW2Q9Y6E2 419 aaKnown RBP14.24□□□□□ -0.13
CLK3-206ENST00000562078 ZNF189O75820 626 aaPredicted RBP14.23□□□□□ -0.13
CLK3-206ENST00000562078 DDNO94850 711 aaPredicted RBP14.23□□□□□ -0.13
CLK3-206ENST00000562078 CYP1A1P04798 512 aaPredicted RBP14.23□□□□□ -0.13
CLK3-206ENST00000562078 BMP3P12645 472 aa14.23□□□□□ -0.13
CLK3-206ENST00000562078 ETS2P15036 469 aa14.23□□□□□ -0.13
CLK3-206ENST00000562078 GPR162Q16538 588 aa14.23□□□□□ -0.13
CLK3-206ENST00000562078 RASIP1Q5U651 963 aa14.23□□□□□ -0.13
CLK3-206ENST00000562078 C9orf131Q5VYM1 1079 aa14.23□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms