RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 TMEM62Q0P6H9 643 aa23.11■■□□□ 1.29
CLN3-209ENST00000561689 TMEM132AQ24JP5 1023 aa23.11■■□□□ 1.29
CLN3-209ENST00000561689 GJB7Q6PEY0 223 aa23.11■■□□□ 1.29
CLN3-209ENST00000561689 KATNAL1Q9BW62 490 aa23.11■■□□□ 1.29
CLN3-209ENST00000561689 TMEM117Q9H0C3 514 aa23.11■■□□□ 1.29
CLN3-209ENST00000561689 INTS2Q9H0H0 1204 aaKnown RBP23.11■■□□□ 1.29
CLN3-209ENST00000561689 PPP2R2CQ9Y2T4 447 aa23.11■■□□□ 1.29
CLN3-209ENST00000561689 HNRNPH3P31942 346 aaKnown RBP23.1■■□□□ 1.29
CLN3-209ENST00000561689 GPC3P51654 580 aa23.1■■□□□ 1.29
CLN3-209ENST00000561689 MCCD1P59942 119 aaPredicted RBP23.1■■□□□ 1.29
CLN3-209ENST00000561689 ZNF200P98182 395 aaPredicted RBP23.1■■□□□ 1.29
CLN3-209ENST00000561689 RUFY4Q6ZNE9 571 aa23.1■■□□□ 1.29
CLN3-209ENST00000561689 CDR2LQ86X02 465 aaPredicted RBP23.1■■□□□ 1.29
CLN3-209ENST00000561689 TMC2Q8TDI7 906 aa23.1■■□□□ 1.29
CLN3-209ENST00000561689 C16orf45Q96MC5 204 aaPredicted RBP23.1■■□□□ 1.29
CLN3-209ENST00000561689 EVPLQ92817 2033 aa23.1■■□□□ 1.29
CLN3-209ENST00000561689 SIP14410 1827 aa23.1■■□□□ 1.29
CLN3-209ENST00000561689 MBLAC1A4D2B0 266 aaPredicted RBP23.1■■□□□ 1.29
CLN3-209ENST00000561689 MYCNP04198 464 aaPredicted RBP23.1■■□□□ 1.29
CLN3-209ENST00000561689 MXI1P50539 228 aa23.1■■□□□ 1.29
CLN3-209ENST00000561689 ATF7IP2Q5U623 682 aa23.1■■□□□ 1.29
CLN3-209ENST00000561689 CXCL17Q6UXB2 119 aa23.1■■□□□ 1.29
CLN3-209ENST00000561689 TSHZ1Q6ZSZ6 1077 aa23.1■■□□□ 1.29
CLN3-209ENST00000561689 RAET1EQ8TD07 263 aa23.1■■□□□ 1.29
CLN3-209ENST00000561689 SPC25Q9HBM1 224 aa23.1■■□□□ 1.29
CLN3-209ENST00000561689 HDAC6Q9UBN7 1215 aa23.1■■□□□ 1.29
CLN3-209ENST00000561689 AJAP1Q9UKB5 411 aaPredicted RBP23.1■■□□□ 1.29
CLN3-209ENST00000561689 N4BP1O75113 896 aaKnown RBP23.09■■□□□ 1.29
CLN3-209ENST00000561689 LRRN2O75325 713 aa23.09■■□□□ 1.29
CLN3-209ENST00000561689 CYP2C9P11712 490 aa23.09■■□□□ 1.29
CLN3-209ENST00000561689 WNT7BP56706 349 aa23.09■■□□□ 1.29
CLN3-209ENST00000561689 MAP2K1Q02750 393 aaPredicted RBP23.09■■□□□ 1.29
CLN3-209ENST00000561689 KIZQ2M2Z5 673 aa23.09■■□□□ 1.29
CLN3-209ENST00000561689 FAM84AQ96KN4 292 aa23.09■■□□□ 1.29
CLN3-209ENST00000561689 UPF3AQ9H1J1 476 aaKnown RBP23.09■■□□□ 1.29
CLN3-209ENST00000561689 XPNPEP3Q9NQH7 507 aa23.09■■□□□ 1.29
CLN3-209ENST00000561689 PRMT7Q9NVM4 692 aaPredicted RBP23.09■■□□□ 1.29
CLN3-209ENST00000561689 RBAKQ9NYW8 714 aaPredicted RBP23.09■■□□□ 1.29
CLN3-209ENST00000561689 GINS2Q9Y248 185 aa23.09■■□□□ 1.29
CLN3-209ENST00000561689 ABLIM1O14639 778 aa23.09■■□□□ 1.29
CLN3-209ENST00000561689 TREHO43280 583 aa23.09■■□□□ 1.29
CLN3-209ENST00000561689 ZEB2O60315 1214 aa23.09■■□□□ 1.29
CLN3-209ENST00000561689 LDHAP00338 332 aaKnown RBP23.09■■□□□ 1.29
CLN3-209ENST00000561689 PLEKP08567 350 aaPredicted RBP23.09■■□□□ 1.29
CLN3-209ENST00000561689 ADAM17P78536 824 aa23.09■■□□□ 1.29
CLN3-209ENST00000561689 CETN1Q12798 172 aa23.09■■□□□ 1.29
CLN3-209ENST00000561689 DNTTIP2Q5QJE6 756 aaKnown RBP23.09■■□□□ 1.29
CLN3-209ENST00000561689 USP37Q86T82 979 aa23.09■■□□□ 1.29
CLN3-209ENST00000561689 IFNLR1Q8IU57 520 aaPredicted RBP23.09■■□□□ 1.29
CLN3-209ENST00000561689 C7orf31Q8N865 590 aa23.09■■□□□ 1.29
CLN3-209ENST00000561689 EHBP1Q8NDI1 1231 aa23.09■■□□□ 1.29
CLN3-209ENST00000561689 LMO3Q8TAP4 145 aa23.09■■□□□ 1.29
CLN3-209ENST00000561689 ZNF296Q8WUU4 475 aaPredicted RBP23.09■■□□□ 1.29
CLN3-209ENST00000561689 NHEJ1Q9H9Q4 299 aaPredicted RBP23.09■■□□□ 1.29
CLN3-209ENST00000561689 ADGRG1Q9Y653 693 aa23.09■■□□□ 1.29
CLN3-209ENST00000561689 KPNA6O60684 536 aa23.08■■□□□ 1.29
CLN3-209ENST00000561689 HMGCRP04035 888 aa23.08■■□□□ 1.29
CLN3-209ENST00000561689 RAPGEF1Q13905 1077 aa23.08■■□□□ 1.29
CLN3-209ENST00000561689 SFMBT2Q5VUG0 894 aa23.08■■□□□ 1.29
CLN3-209ENST00000561689 IQCEQ6IPM2 695 aa23.08■■□□□ 1.29
CLN3-209ENST00000561689 PDZRN4Q6ZMN7 1036 aaPredicted RBP23.08■■□□□ 1.29
CLN3-209ENST00000561689 ACRBPQ8NEB7 543 aa23.08■■□□□ 1.29
CLN3-209ENST00000561689 MTG1Q9BT17 334 aaPredicted RBP23.08■■□□□ 1.29
CLN3-209ENST00000561689 PDE11AQ9HCR9 933 aa23.08■■□□□ 1.29
CLN3-209ENST00000561689 PTPRHQ9HD43 1115 aa23.08■■□□□ 1.29
CLN3-209ENST00000561689 C17orf102A2RUQ5 167 aa23.07■■□□□ 1.28
CLN3-209ENST00000561689 P4HA2O15460 535 aa23.07■■□□□ 1.28
CLN3-209ENST00000561689 ZSCAN12O43309 604 aa23.07■■□□□ 1.28
CLN3-209ENST00000561689 FAM189A1O60320 539 aa23.07■■□□□ 1.28
CLN3-209ENST00000561689 ADAMTS4O75173 837 aa23.07■■□□□ 1.28
CLN3-209ENST00000561689 PROZP22891 400 aa23.07■■□□□ 1.28
CLN3-209ENST00000561689 TNFSF9P41273 254 aa23.07■■□□□ 1.28
CLN3-209ENST00000561689 ARID5AQ03989 594 aa23.07■■□□□ 1.28
CLN3-209ENST00000561689 MCL1Q07820 350 aa23.07■■□□□ 1.28
CLN3-209ENST00000561689 PSMD6Q15008 389 aa23.07■■□□□ 1.28
CLN3-209ENST00000561689 AMHR2Q16671 573 aa23.07■■□□□ 1.28
CLN3-209ENST00000561689 EPC2Q52LR7 807 aa23.07■■□□□ 1.28
CLN3-209ENST00000561689 EEF1DP3Q658K8 133 aa23.07■■□□□ 1.28
CLN3-209ENST00000561689 LMBRD2Q68DH5 695 aaPredicted RBP23.07■■□□□ 1.28
CLN3-209ENST00000561689 MPZL3Q6UWV2 235 aa23.07■■□□□ 1.28
CLN3-209ENST00000561689 REXO1L1PQ8IX06 675 aa23.07■■□□□ 1.28
CLN3-209ENST00000561689 SPAG5Q96R06 1193 aa23.07■■□□□ 1.28
CLN3-209ENST00000561689 FNBP1Q96RU3 617 aa23.07■■□□□ 1.28
CLN3-209ENST00000561689 NUCKS1Q9H1E3 243 aaKnown RBP23.07■■□□□ 1.28
CLN3-209ENST00000561689 UTP3Q9NQZ2 479 aaKnown RBP eCLIP23.07■■□□□ 1.286e-9■■■■■ 134.6
CLN3-209ENST00000561689 ARHGAP20Q9P2F6 1191 aa23.07■■□□□ 1.28
CLN3-209ENST00000561689 EPN1Q9Y6I3 576 aaPredicted RBP23.07■■□□□ 1.28
CLN3-209ENST00000561689 SMIM35A0A1B0GVV1 85 aa23.07■■□□□ 1.28
CLN3-209ENST00000561689 FKTNO75072 461 aa23.07■■□□□ 1.28
CLN3-209ENST00000561689 CCDC175P0C221 793 aa23.07■■□□□ 1.28
CLN3-209ENST00000561689 CDK17Q00537 523 aa23.07■■□□□ 1.28
CLN3-209ENST00000561689 FAM187BQ17R55 369 aa23.07■■□□□ 1.28
CLN3-209ENST00000561689 ZNF568Q3ZCX4 644 aa23.07■■□□□ 1.28
CLN3-209ENST00000561689 KRT39Q6A163 491 aa23.07■■□□□ 1.28
CLN3-209ENST00000561689 DNAJB3Q8WWF6 145 aa23.07■■□□□ 1.28
CLN3-209ENST00000561689 ERO1AQ96HE7 468 aa23.07■■□□□ 1.28
CLN3-209ENST00000561689 ADAMTS10Q9H324 1103 aa23.07■■□□□ 1.28
CLN3-209ENST00000561689 TMEM8AQ9HCN3 771 aa23.07■■□□□ 1.28
CLN3-209ENST00000561689 FBXL5Q9UKA1 691 aa23.07■■□□□ 1.28
CLN3-209ENST00000561689 DNAH12Q6ZR08 3092 aa23.06■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms