RNA–Protein interactions for RNA: ENST00000561326.5

USP3-219, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 4

Gene USP3, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-219ENST00000561326 TMEM62Q0P6H9 643 aa11.2□□□□□ -0.62
USP3-219ENST00000561326 HIC1Q14526 733 aa11.2□□□□□ -0.62
USP3-219ENST00000561326 NOLC1Q14978 699 aaKnown RBP eCLIP11.2□□□□□ -0.62
USP3-219ENST00000561326 PTGISQ16647 500 aa11.2□□□□□ -0.62
USP3-219ENST00000561326 EXOC3L4Q17RC7 722 aa11.2□□□□□ -0.62
USP3-219ENST00000561326 GDF6Q6KF10 455 aaPredicted RBP11.2□□□□□ -0.62
USP3-219ENST00000561326 CATSPER4Q7RTX7 472 aa11.2□□□□□ -0.62
USP3-219ENST00000561326 ZBTB33Q86T24 672 aa11.2□□□□□ -0.62
USP3-219ENST00000561326 SERINC5Q86VE9 423 aa11.2□□□□□ -0.62
USP3-219ENST00000561326 CBWD2Q8IUF1 395 aa11.2□□□□□ -0.62
USP3-219ENST00000561326 CCDC112Q8NEF3 446 aa11.2□□□□□ -0.62
USP3-219ENST00000561326 PARD3BQ8TEW8 1205 aa11.2□□□□□ -0.62
USP3-219ENST00000561326 ZBTB45Q96K62 511 aaPredicted RBP11.2□□□□□ -0.62
USP3-219ENST00000561326 PANX2Q96RD6 677 aa11.2□□□□□ -0.62
USP3-219ENST00000561326 PPP1R16BQ96T49 567 aa11.2□□□□□ -0.62
USP3-219ENST00000561326 CELF4Q9BZC1 486 aaKnown RBP11.2□□□□□ -0.62
USP3-219ENST00000561326 RNF208Q9H0X6 261 aa11.2□□□□□ -0.62
USP3-219ENST00000561326 UNC93B1Q9H1C4 597 aa11.2□□□□□ -0.62
USP3-219ENST00000561326 MINDY3Q9H8M7 445 aa11.2□□□□□ -0.62
USP3-219ENST00000561326 CAPN11Q9UMQ6 739 aa11.2□□□□□ -0.62
USP3-219ENST00000561326 A0A0U1RQG5 324 aaPredicted RBP11.19□□□□□ -0.62
USP3-219ENST00000561326 A0A1B0GUA9 196 aa11.19□□□□□ -0.62
USP3-219ENST00000561326 A0A1W2PQJ5 194 aa11.19□□□□□ -0.62
USP3-219ENST00000561326 DNM1LO00429 736 aa11.19□□□□□ -0.62
USP3-219ENST00000561326 PMM2O15305 246 aa11.19□□□□□ -0.62
USP3-219ENST00000561326 CCL5P13501 91 aa11.19□□□□□ -0.62
USP3-219ENST00000561326 PROZP22891 400 aa11.19□□□□□ -0.62
USP3-219ENST00000561326 KRT9P35527 623 aa11.19□□□□□ -0.62
USP3-219ENST00000561326 ACOT2P49753 483 aa11.19□□□□□ -0.62
USP3-219ENST00000561326 AP3M2P53677 418 aa11.19□□□□□ -0.62
USP3-219ENST00000561326 MRPS6P82932 125 aaKnown RBP11.19□□□□□ -0.62
USP3-219ENST00000561326 PTK7Q13308 1070 aa11.19□□□□□ -0.62
USP3-219ENST00000561326 ZNF568Q3ZCX4 644 aa11.19□□□□□ -0.62
USP3-219ENST00000561326 NOTUMQ6P988 496 aa11.19□□□□□ -0.62
USP3-219ENST00000561326 FBXO46Q6PJ61 603 aaPredicted RBP11.19□□□□□ -0.62
USP3-219ENST00000561326 CACNA2D4Q7Z3S7 1137 aa11.19□□□□□ -0.62
USP3-219ENST00000561326 OR8K1Q8NGG5 319 aa11.19□□□□□ -0.62
USP3-219ENST00000561326 PPP1R13LQ8WUF5 828 aa11.19□□□□□ -0.62
USP3-219ENST00000561326 CACTINQ8WUQ7 758 aaKnown RBP11.19□□□□□ -0.62
USP3-219ENST00000561326 CCDC127Q96BQ5 260 aa11.19□□□□□ -0.62
USP3-219ENST00000561326 NUCKS1Q9H1E3 243 aaKnown RBP11.19□□□□□ -0.62
USP3-219ENST00000561326 PTPRHQ9HD43 1115 aa11.19□□□□□ -0.62
USP3-219ENST00000561326 PLCB1Q9NQ66 1216 aa11.19□□□□□ -0.62
USP3-219ENST00000561326 PAK6Q9NQU5 681 aaPredicted RBP11.19□□□□□ -0.62
USP3-219ENST00000561326 STARD7Q9NQZ5 370 aa11.19□□□□□ -0.62
USP3-219ENST00000561326 ZNHIT6Q9NWK9 470 aaKnown RBP11.19□□□□□ -0.62
USP3-219ENST00000561326 RBAKQ9NYW8 714 aaPredicted RBP11.19□□□□□ -0.62
USP3-219ENST00000561326 PHF24Q9UPV7 400 aa11.19□□□□□ -0.62
USP3-219ENST00000561326 SIK3Q9Y2K2 1263 aa11.19□□□□□ -0.62
USP3-219ENST00000561326 DAAM1Q9Y4D1 1078 aa11.19□□□□□ -0.62
USP3-219ENST00000561326 A0A1W2PQ45 241 aaPredicted RBP11.18□□□□□ -0.62
USP3-219ENST00000561326 A0A1W2PQY0 241 aa11.18□□□□□ -0.62
USP3-219ENST00000561326 B4GALT5O43286 388 aa11.18□□□□□ -0.62
USP3-219ENST00000561326 CAND2O75155 1236 aa11.18□□□□□ -0.62
USP3-219ENST00000561326 CSDE1O75534 798 aaKnown RBP11.18□□□□□ -0.62
USP3-219ENST00000561326 IL18RAPO95256 599 aa11.18□□□□□ -0.62
USP3-219ENST00000561326 GYPCP04921 128 aa11.18□□□□□ -0.62
USP3-219ENST00000561326 CLTAP09496 248 aa11.18□□□□□ -0.62
USP3-219ENST00000561326 IQCF3P0C7M6 154 aa11.18□□□□□ -0.62
USP3-219ENST00000561326 HARSP12081 509 aaKnown RBP11.18□□□□□ -0.62
USP3-219ENST00000561326 SKILP12757 684 aa11.18□□□□□ -0.62
USP3-219ENST00000561326 ARF4P18085 180 aaPredicted RBP11.18□□□□□ -0.62
USP3-219ENST00000561326 TNNI1P19237 187 aa11.18□□□□□ -0.62
USP3-219ENST00000561326 MSNP26038 577 aaKnown RBP11.18□□□□□ -0.62
USP3-219ENST00000561326 CASP14P31944 242 aa11.18□□□□□ -0.62
USP3-219ENST00000561326 CTCFP49711 727 aaPredicted RBP11.18□□□□□ -0.62
USP3-219ENST00000561326 ADKP55263 362 aaKnown RBP11.18□□□□□ -0.62
USP3-219ENST00000561326 ZBED6P86452 979 aa11.18□□□□□ -0.62
USP3-219ENST00000561326 MYL7Q01449 175 aa11.18□□□□□ -0.62
USP3-219ENST00000561326 PSMD6Q15008 389 aa11.18□□□□□ -0.62
USP3-219ENST00000561326 SNX17Q15036 470 aa11.18□□□□□ -0.62
USP3-219ENST00000561326 AMHR2Q16671 573 aa11.18□□□□□ -0.62
USP3-219ENST00000561326 PTPN21Q16825 1174 aa11.18□□□□□ -0.62
USP3-219ENST00000561326 DCAF4L1Q3SXM0 396 aa11.18□□□□□ -0.62
USP3-219ENST00000561326 KRT39Q6A163 491 aa11.18□□□□□ -0.62
USP3-219ENST00000561326 ZNF830Q96NB3 372 aaPredicted RBP11.18□□□□□ -0.62
USP3-219ENST00000561326 DEFB118Q96PH6 123 aa11.18□□□□□ -0.62
USP3-219ENST00000561326 OSMRQ99650 979 aa11.18□□□□□ -0.62
USP3-219ENST00000561326 CRACR2AQ9BSW2 395 aa11.18□□□□□ -0.62
USP3-219ENST00000561326 NAA15Q9BXJ9 866 aaKnown RBP11.18□□□□□ -0.62
USP3-219ENST00000561326 RPF1Q9H9Y2 349 aaKnown RBP11.18□□□□□ -0.62
USP3-219ENST00000561326 CDHR5Q9HBB8 845 aa11.18□□□□□ -0.62
USP3-219ENST00000561326 TMEM8AQ9HCN3 771 aa11.18□□□□□ -0.62
USP3-219ENST00000561326 FAM207AQ9NSI2 230 aaPredicted RBP11.18□□□□□ -0.62
USP3-219ENST00000561326 USP20Q9Y2K6 914 aa11.18□□□□□ -0.62
USP3-219ENST00000561326 TRPV2Q9Y5S1 764 aa11.18□□□□□ -0.62
USP3-219ENST00000561326 GRIN2DO15399 1336 aa11.17□□□□□ -0.62
USP3-219ENST00000561326 TTC26A0AVF1 554 aa11.17□□□□□ -0.62
USP3-219ENST00000561326 TTLL13PA6NNM8 815 aa11.17□□□□□ -0.62
USP3-219ENST00000561326 ARVCFO00192 962 aa11.17□□□□□ -0.62
USP3-219ENST00000561326 GPR182O15218 404 aa11.17□□□□□ -0.62
USP3-219ENST00000561326 TSPAN1O60635 241 aa11.17□□□□□ -0.62
USP3-219ENST00000561326 MFAP3LO75121 409 aa11.17□□□□□ -0.62
USP3-219ENST00000561326 TFRCP02786 760 aaKnown RBP11.17□□□□□ -0.62
USP3-219ENST00000561326 EDN1P05305 212 aa11.17□□□□□ -0.62
USP3-219ENST00000561326 ADRB2P07550 413 aa11.17□□□□□ -0.62
USP3-219ENST00000561326 TRIM49P0CI25 452 aa11.17□□□□□ -0.62
USP3-219ENST00000561326 TRIM49CP0CI26 452 aa11.17□□□□□ -0.62
USP3-219ENST00000561326 DLATP10515 647 aaKnown RBP11.17□□□□□ -0.62
USP3-219ENST00000561326 HSPA8P11142 646 aaKnown RBP11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms