RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, human

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPG11-223	ENST00000560858	CHD2	O14647	1828 aa	Known RBP	3.06	□□□□□ -1.92
SPG11-223	ENST00000560858	PRODH	O43272	600 aa		3.06	□□□□□ -1.92
SPG11-223	ENST00000560858	SCAF4	O95104	1147 aa	Known RBP	3.06	□□□□□ -1.92
SPG11-223	ENST00000560858	MPIG6B	O95866	241 aa		3.06	□□□□□ -1.92
SPG11-223	ENST00000560858	C4BPA	P04003	597 aa	Known RBP	3.06	□□□□□ -1.92
SPG11-223	ENST00000560858	TRIM27	P14373	513 aa		3.06	□□□□□ -1.92
SPG11-223	ENST00000560858	GNAT2	P19087	354 aa		3.06	□□□□□ -1.92
SPG11-223	ENST00000560858	CANX	P27824	592 aa	Known RBP	3.06	□□□□□ -1.92
SPG11-223	ENST00000560858	DDIT3	P35638	169 aa		3.06	□□□□□ -1.92
SPG11-223	ENST00000560858	TMPO	P42166	694 aa	Known RBP	3.06	□□□□□ -1.92
SPG11-223	ENST00000560858	MTHFS	P49914	203 aa		3.06	□□□□□ -1.92
SPG11-223	ENST00000560858	CRY1	Q16526	586 aa		3.06	□□□□□ -1.92
SPG11-223	ENST00000560858	SLC10A6	Q3KNW5	377 aa		3.06	□□□□□ -1.92
SPG11-223	ENST00000560858	GAGE13	Q4V321	117 aa		3.06	□□□□□ -1.92
SPG11-223	ENST00000560858	KIF24	Q5T7B8	1368 aa		3.06	□□□□□ -1.92
SPG11-223	ENST00000560858	NAIF1	Q69YI7	327 aa	Predicted RBP	3.06	□□□□□ -1.92
SPG11-223	ENST00000560858	SP5	Q6BEB4	398 aa	Predicted RBP	3.06	□□□□□ -1.92
SPG11-223	ENST00000560858	MRM1	Q6IN84	353 aa	Known RBP	3.06	□□□□□ -1.92
SPG11-223	ENST00000560858	NSMF	Q6X4W1	530 aa		3.06	□□□□□ -1.92
SPG11-223	ENST00000560858		Q6YL49	198 aa		3.06	□□□□□ -1.92
SPG11-223	ENST00000560858	AATK	Q6ZMQ8	1374 aa		3.06	□□□□□ -1.92
SPG11-223	ENST00000560858	MB21D1	Q8N884	522 aa		3.06	□□□□□ -1.92
SPG11-223	ENST00000560858	SCARB1	Q8WTV0	552 aa		3.06	□□□□□ -1.92
SPG11-223	ENST00000560858	ST8SIA2	Q92186	375 aa		3.06	□□□□□ -1.92
SPG11-223	ENST00000560858	FBXW5	Q969U6	566 aa		3.06	□□□□□ -1.92
SPG11-223	ENST00000560858	ZNF428	Q96B54	188 aa		3.06	□□□□□ -1.92
SPG11-223	ENST00000560858	ARL8A	Q96BM9	186 aa		3.06	□□□□□ -1.92
SPG11-223	ENST00000560858	MYEOV	Q96EZ4	313 aa		3.06	□□□□□ -1.92
SPG11-223	ENST00000560858	ZNF512	Q96ME7	567 aa	Predicted RBP	3.06	□□□□□ -1.92
SPG11-223	ENST00000560858	SLC12A5	Q9H2X9	1139 aa		3.06	□□□□□ -1.92
SPG11-223	ENST00000560858	RWDD1	Q9H446	243 aa	Predicted RBP	3.06	□□□□□ -1.92
SPG11-223	ENST00000560858	SERHL2	Q9H4I8	314 aa		3.06	□□□□□ -1.92
SPG11-223	ENST00000560858	UPF2	Q9HAU5	1272 aa	Known RBP	3.06	□□□□□ -1.92
SPG11-223	ENST00000560858	ATP10D	Q9P241	1426 aa		3.06	□□□□□ -1.92
SPG11-223	ENST00000560858	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	3.06	□□□□□ -1.92
SPG11-223	ENST00000560858	SAE1	Q9UBE0	346 aa	Predicted RBP	3.06	□□□□□ -1.92
SPG11-223	ENST00000560858	DDX19B	Q9UMR2	479 aa		3.06	□□□□□ -1.92
SPG11-223	ENST00000560858	TSPOAP1	O95153	1857 aa		3.05	□□□□□ -1.92
SPG11-223	ENST00000560858	PIK3C2A	O00443	1686 aa		3.05	□□□□□ -1.92
SPG11-223	ENST00000560858	PHRF1	Q9P1Y6	1649 aa	Known RBP	3.05	□□□□□ -1.92
SPG11-223	ENST00000560858	DIP2A	Q14689	1571 aa		3.05	□□□□□ -1.92
SPG11-223	ENST00000560858	OVOS2	A0A0J9YW53	1432 aa		3.05	□□□□□ -1.92
SPG11-223	ENST00000560858	RGS12	O14924	1447 aa		3.05	□□□□□ -1.92
SPG11-223	ENST00000560858	OVOS2	Q6IE36	1432 aa		3.05	□□□□□ -1.92
SPG11-223	ENST00000560858	RIMS2	Q9UQ26	1411 aa		3.05	□□□□□ -1.92
SPG11-223	ENST00000560858	ABCC4	O15439	1325 aa		3.05	□□□□□ -1.92
SPG11-223	ENST00000560858	IQCA1L	A6NCM1	817 aa		3.05	□□□□□ -1.92
SPG11-223	ENST00000560858	MYADML2	A6NDP7	307 aa		3.05	□□□□□ -1.92
SPG11-223	ENST00000560858	GRXCR1	A8MXD5	290 aa		3.05	□□□□□ -1.92
SPG11-223	ENST00000560858	TRIM24	O15164	1050 aa		3.05	□□□□□ -1.92
SPG11-223	ENST00000560858	CLASP2	O75122	1294 aa	Known RBP	3.05	□□□□□ -1.92
SPG11-223	ENST00000560858	MAF	O75444	373 aa	Predicted RBP	3.05	□□□□□ -1.92
SPG11-223	ENST00000560858	FGFR1	P11362	822 aa		3.05	□□□□□ -1.92
SPG11-223	ENST00000560858	PDIA4	P13667	645 aa	Known RBP	3.05	□□□□□ -1.92
SPG11-223	ENST00000560858	GYPE	P15421	78 aa		3.05	□□□□□ -1.92
SPG11-223	ENST00000560858	RBM25	P49756	843 aa	Known RBP	3.05	□□□□□ -1.92
SPG11-223	ENST00000560858	IFRD2	Q12894	506 aa	Predicted RBP	3.05	□□□□□ -1.92
SPG11-223	ENST00000560858	MAPK7	Q13164	816 aa		3.05	□□□□□ -1.92
SPG11-223	ENST00000560858	TCIRG1	Q13488	830 aa		3.05	□□□□□ -1.92
SPG11-223	ENST00000560858	ALDH1L2	Q3SY69	923 aa		3.05	□□□□□ -1.92
SPG11-223	ENST00000560858	PRR16	Q569H4	304 aa		3.05	□□□□□ -1.92
SPG11-223	ENST00000560858	L1TD1	Q5T7N2	865 aa	Known RBP	3.05	□□□□□ -1.92
SPG11-223	ENST00000560858	LCE1A	Q5T7P2	110 aa		3.05	□□□□□ -1.92
SPG11-223	ENST00000560858	KRT40	Q6A162	431 aa		3.05	□□□□□ -1.92
SPG11-223	ENST00000560858	C16orf59	Q7L2K0	433 aa		3.05	□□□□□ -1.92
SPG11-223	ENST00000560858	HIPK4	Q8NE63	616 aa		3.05	□□□□□ -1.92
SPG11-223	ENST00000560858	CAVIN3	Q969G5	261 aa		3.05	□□□□□ -1.92
SPG11-223	ENST00000560858	SGSM3	Q96HU1	749 aa		3.05	□□□□□ -1.92
SPG11-223	ENST00000560858	GBP4	Q96PP9	640 aa		3.05	□□□□□ -1.92
SPG11-223	ENST00000560858	AARSD1	Q9BTE6	412 aa	Known RBP	3.05	□□□□□ -1.92
SPG11-223	ENST00000560858	KRTAP1-5	Q9BYS1	174 aa		3.05	□□□□□ -1.92
SPG11-223	ENST00000560858	SLC29A3	Q9BZD2	475 aa		3.05	□□□□□ -1.92
SPG11-223	ENST00000560858	POGK	Q9P215	609 aa		3.05	□□□□□ -1.92
SPG11-223	ENST00000560858	SFMBT1	Q9UHJ3	866 aa		3.05	□□□□□ -1.92
SPG11-223	ENST00000560858	DENND2A	Q9ULE3	1009 aa		3.05	□□□□□ -1.92
SPG11-223	ENST00000560858	ISY1	Q9ULR0	285 aa	Known RBP	3.05	□□□□□ -1.92
SPG11-223	ENST00000560858	RRP7A	Q9Y3A4	280 aa	Known RBP	3.05	□□□□□ -1.92
SPG11-223	ENST00000560858	RGPD8	O14715	1765 aa	Predicted RBP	3.05	□□□□□ -1.92
SPG11-223	ENST00000560858	KDM3B	Q7LBC6	1761 aa		3.05	□□□□□ -1.92
SPG11-223	ENST00000560858	CAMTA1	Q9Y6Y1	1673 aa		3.04	□□□□□ -1.92
SPG11-223	ENST00000560858	MED1	Q15648	1581 aa	Predicted RBP	3.04	□□□□□ -1.92
SPG11-223	ENST00000560858	IBTK	Q9P2D0	1353 aa	Predicted RBP	3.04	□□□□□ -1.92
SPG11-223	ENST00000560858	CENPVL1	A0A0U1RR11	272 aa		3.04	□□□□□ -1.92
SPG11-223	ENST00000560858	PRAMEF22	A3QJZ6	481 aa		3.04	□□□□□ -1.92
SPG11-223	ENST00000560858	C2orf78	A6NCI8	922 aa		3.04	□□□□□ -1.92
SPG11-223	ENST00000560858	AQP7	O14520	342 aa		3.04	□□□□□ -1.92
SPG11-223	ENST00000560858	WNT9A	O14904	365 aa		3.04	□□□□□ -1.92
SPG11-223	ENST00000560858	AMY2A	P04746	511 aa		3.04	□□□□□ -1.92
SPG11-223	ENST00000560858	MME	P08473	750 aa		3.04	□□□□□ -1.92
SPG11-223	ENST00000560858	PABPC1	P11940	636 aa	Known RBP	3.04	□□□□□ -1.92
SPG11-223	ENST00000560858	AMY2B	P19961	511 aa		3.04	□□□□□ -1.92
SPG11-223	ENST00000560858	CXCR5	P32302	372 aa		3.04	□□□□□ -1.92
SPG11-223	ENST00000560858	JAM2	P57087	298 aa		3.04	□□□□□ -1.92
SPG11-223	ENST00000560858	NTRK3	Q16288	839 aa		3.04	□□□□□ -1.92
SPG11-223	ENST00000560858	GPR162	Q16538	588 aa		3.04	□□□□□ -1.92
SPG11-223	ENST00000560858	BMP2KL	Q5H9B9	411 aa		3.04	□□□□□ -1.92
SPG11-223	ENST00000560858	DCAF17	Q5H9S7	520 aa	Predicted RBP	3.04	□□□□□ -1.92
SPG11-223	ENST00000560858	C1QL3	Q5VWW1	255 aa		3.04	□□□□□ -1.92
SPG11-223	ENST00000560858	KRTAP5-11	Q6L8G4	156 aa		3.04	□□□□□ -1.92
SPG11-223	ENST00000560858	ATF7IP	Q6VMQ6	1270 aa		3.04	□□□□□ -1.92

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