RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 SEPT4O43236 478 aa5.87□□□□□ -1.47
VPS13C-209ENST00000560637 PLA2G6O60733 806 aa5.87□□□□□ -1.47
VPS13C-209ENST00000560637 HSPA6P17066 643 aa5.87□□□□□ -1.47
VPS13C-209ENST00000560637 EEF1GP26641 437 aaKnown RBP5.87□□□□□ -1.47
VPS13C-209ENST00000560637 POLR2BP30876 1174 aaKnown RBP5.87□□□□□ -1.47
VPS13C-209ENST00000560637 PBX3P40426 434 aa5.87□□□□□ -1.47
VPS13C-209ENST00000560637 RFC5P40937 340 aa5.87□□□□□ -1.47
VPS13C-209ENST00000560637 CLK2P49760 499 aaKnown RBP5.87□□□□□ -1.47
VPS13C-209ENST00000560637 RGS7P49802 495 aa5.87□□□□□ -1.47
VPS13C-209ENST00000560637 MDM2Q00987 491 aaPredicted RBP5.87□□□□□ -1.47
VPS13C-209ENST00000560637 MYO1EQ12965 1108 aa5.87□□□□□ -1.47
VPS13C-209ENST00000560637 MTF1Q14872 753 aa5.87□□□□□ -1.47
VPS13C-209ENST00000560637 TMCO4Q5TGY1 634 aa5.87□□□□□ -1.47
VPS13C-209ENST00000560637 GLB1LQ6UWU2 654 aa5.87□□□□□ -1.47
VPS13C-209ENST00000560637 KIF18AQ8NI77 898 aa5.87□□□□□ -1.47
VPS13C-209ENST00000560637 BSNDQ8WZ55 320 aa5.87□□□□□ -1.47
VPS13C-209ENST00000560637 AGPAT5Q9NUQ2 364 aa5.87□□□□□ -1.47
VPS13C-209ENST00000560637 SEL1LQ9UBV2 794 aa5.87□□□□□ -1.47
VPS13C-209ENST00000560637 TTC26A0AVF1 554 aa5.87□□□□□ -1.47
VPS13C-209ENST00000560637 LRRC53A6NM62 1247 aa5.87□□□□□ -1.47
VPS13C-209ENST00000560637 CCP110O43303 1012 aa5.87□□□□□ -1.47
VPS13C-209ENST00000560637 XPOTO43592 962 aaKnown RBP5.87□□□□□ -1.47
VPS13C-209ENST00000560637 KRT86O43790 486 aa5.87□□□□□ -1.47
VPS13C-209ENST00000560637 HUS1O60921 280 aa5.87□□□□□ -1.47
VPS13C-209ENST00000560637 TADA2AO75478 443 aa5.87□□□□□ -1.47
VPS13C-209ENST00000560637 GRAP2O75791 330 aa5.87□□□□□ -1.47
VPS13C-209ENST00000560637 RGS20O76081 388 aa5.87□□□□□ -1.47
VPS13C-209ENST00000560637 ATF7P17544 494 aaPredicted RBP5.87□□□□□ -1.47
VPS13C-209ENST00000560637 BMP6P22004 513 aa5.87□□□□□ -1.47
VPS13C-209ENST00000560637 SP100P23497 879 aaPredicted RBP5.87□□□□□ -1.47
VPS13C-209ENST00000560637 CYP2C18P33260 490 aa5.87□□□□□ -1.47
VPS13C-209ENST00000560637 EIF4A3P38919 411 aaKnown RBP5.87□□□□□ -1.47
VPS13C-209ENST00000560637 SLC12A3P55017 1021 aa5.87□□□□□ -1.47
VPS13C-209ENST00000560637 CAPSQ13938 189 aa5.87□□□□□ -1.47
VPS13C-209ENST00000560637 MESDQ14696 234 aa5.87□□□□□ -1.47
VPS13C-209ENST00000560637 DUOXA2Q1HG44 320 aa5.87□□□□□ -1.47
VPS13C-209ENST00000560637 ZNF484Q5JVG2 852 aa5.87□□□□□ -1.47
VPS13C-209ENST00000560637 ABHD15Q6UXT9 468 aa5.87□□□□□ -1.47
VPS13C-209ENST00000560637 BHMTQ93088 406 aa5.87□□□□□ -1.47
VPS13C-209ENST00000560637 YME1L1Q96TA2 773 aa5.87□□□□□ -1.47
VPS13C-209ENST00000560637 TRIM31Q9BZY9 425 aa5.87□□□□□ -1.47
VPS13C-209ENST00000560637 GOLGA2P5Q9HBQ8 144 aa5.87□□□□□ -1.47
VPS13C-209ENST00000560637 PRMT7Q9NVM4 692 aaPredicted RBP5.87□□□□□ -1.47
VPS13C-209ENST00000560637 DDX60Q8IY21 1712 aaKnown RBP5.87□□□□□ -1.47
VPS13C-209ENST00000560637 IKBKBO14920 756 aa5.87□□□□□ -1.47
VPS13C-209ENST00000560637 CYP26A1O43174 497 aa5.87□□□□□ -1.47
VPS13C-209ENST00000560637 STAG3L1P0CL83 205 aa5.87□□□□□ -1.47
VPS13C-209ENST00000560637 ACAT1P24752 427 aaKnown RBP5.87□□□□□ -1.47
VPS13C-209ENST00000560637 TNFSF9P41273 254 aa5.87□□□□□ -1.47
VPS13C-209ENST00000560637 RAP1GAPP47736 663 aa5.87□□□□□ -1.47
VPS13C-209ENST00000560637 VPS41P49754 854 aa5.87□□□□□ -1.47
VPS13C-209ENST00000560637 MRPS25P82663 173 aaKnown RBP5.87□□□□□ -1.47
VPS13C-209ENST00000560637 NCOA4Q13772 614 aa5.87□□□□□ -1.47
VPS13C-209ENST00000560637 HLTFQ14527 1009 aaKnown RBP eCLIP5.87□□□□□ -1.47
VPS13C-209ENST00000560637 DRAP1Q14919 205 aaPredicted RBP5.87□□□□□ -1.47
VPS13C-209ENST00000560637 TMEM132DQ14C87 1099 aa5.87□□□□□ -1.47
VPS13C-209ENST00000560637 ARSHQ5FYA8 562 aa5.87□□□□□ -1.47
VPS13C-209ENST00000560637 OR6B2Q6IFH4 312 aa5.87□□□□□ -1.47
VPS13C-209ENST00000560637 NOTUMQ6P988 496 aa5.87□□□□□ -1.47
VPS13C-209ENST00000560637 CYP26C1Q6V0L0 522 aa5.87□□□□□ -1.47
VPS13C-209ENST00000560637 C1orf186Q6ZWK4 172 aa5.87□□□□□ -1.47
VPS13C-209ENST00000560637 C7orf61Q8IZ16 206 aa5.87□□□□□ -1.47
VPS13C-209ENST00000560637 BEST2Q8NFU1 509 aa5.87□□□□□ -1.47
VPS13C-209ENST00000560637 SLC30A5Q8TAD4 765 aa5.87□□□□□ -1.47
VPS13C-209ENST00000560637 DHX38Q92620 1227 aaKnown RBP5.87□□□□□ -1.47
VPS13C-209ENST00000560637 NOX5Q96PH1 765 aa5.87□□□□□ -1.47
VPS13C-209ENST00000560637 C11orf70Q9BRQ4 267 aa5.87□□□□□ -1.47
VPS13C-209ENST00000560637 XRN2Q9H0D6 950 aaKnown RBP eCLIP5.87□□□□□ -1.47
VPS13C-209ENST00000560637 ACP6Q9NPH0 428 aa5.87□□□□□ -1.47
VPS13C-209ENST00000560637 PDXKO00764 312 aa5.86□□□□□ -1.47
VPS13C-209ENST00000560637 SCAMP3O14828 347 aaKnown RBP5.86□□□□□ -1.47
VPS13C-209ENST00000560637 BNIP3LO60238 219 aa5.86□□□□□ -1.47
VPS13C-209ENST00000560637 TACC1O75410 805 aa5.86□□□□□ -1.47
VPS13C-209ENST00000560637 CNMDO75829 334 aa5.86□□□□□ -1.47
VPS13C-209ENST00000560637 LDHAP00338 332 aaKnown RBP5.86□□□□□ -1.47
VPS13C-209ENST00000560637 ZNF18P17022 549 aa5.86□□□□□ -1.47
VPS13C-209ENST00000560637 EIF4BP23588 611 aaKnown RBP5.86□□□□□ -1.47
VPS13C-209ENST00000560637 CXCR5P32302 372 aa5.86□□□□□ -1.47
VPS13C-209ENST00000560637 ELF1P32519 619 aa5.86□□□□□ -1.47
VPS13C-209ENST00000560637 CETN2P41208 172 aa5.86□□□□□ -1.47
VPS13C-209ENST00000560637 PAFAH1B1P43034 410 aa5.86□□□□□ -1.47
VPS13C-209ENST00000560637 NSFP46459 744 aaKnown RBP5.86□□□□□ -1.47
VPS13C-209ENST00000560637 MFAP3P55082 362 aa5.86□□□□□ -1.47
VPS13C-209ENST00000560637 CDH8P55286 799 aa5.86□□□□□ -1.47
VPS13C-209ENST00000560637 KRT83P78385 493 aa5.86□□□□□ -1.47
VPS13C-209ENST00000560637 TLE2Q04725 743 aa5.86□□□□□ -1.47
VPS13C-209ENST00000560637 SEMA3FQ13275 785 aa5.86□□□□□ -1.47
VPS13C-209ENST00000560637 KCNB1Q14721 858 aa5.86□□□□□ -1.47
VPS13C-209ENST00000560637 IQCB1Q15051 598 aa5.86□□□□□ -1.47
VPS13C-209ENST00000560637 E2F4Q16254 413 aa5.86□□□□□ -1.47
VPS13C-209ENST00000560637 KAZNQ674X7 775 aa5.86□□□□□ -1.47
VPS13C-209ENST00000560637 KRT39Q6A163 491 aa5.86□□□□□ -1.47
VPS13C-209ENST00000560637 C17orf99Q6UX52 265 aa5.86□□□□□ -1.47
VPS13C-209ENST00000560637 ZSWIM2Q8NEG5 633 aa5.86□□□□□ -1.47
VPS13C-209ENST00000560637 TAS1R2Q8TE23 839 aa5.86□□□□□ -1.47
VPS13C-209ENST00000560637 ZFP42Q96MM3 310 aa5.86□□□□□ -1.47
VPS13C-209ENST00000560637 PGLYRP2Q96PD5 576 aa5.86□□□□□ -1.47
VPS13C-209ENST00000560637 THAP9Q9H5L6 903 aa5.86□□□□□ -1.47
VPS13C-209ENST00000560637 DDX20Q9UHI6 824 aaKnown RBP5.86□□□□□ -1.47
VPS13C-209ENST00000560637 BRCA1P38398 1863 aaKnown RBP5.86□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms