RNA–Protein interactions for RNA: ENST00000560634.1

CSPG4P11-201, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 11, humanhuman

BASIC

Gene CSPG4P11, Length 4,910 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P11-201ENST00000560634 USP17L24Q0WX57 530 aa13.97□□□□□ -0.17
CSPG4P11-201ENST00000560634 LRRC14Q15048 493 aa13.97□□□□□ -0.17
CSPG4P11-201ENST00000560634 SUSD4Q5VX71 490 aa13.97□□□□□ -0.17
CSPG4P11-201ENST00000560634 USP17L6PQ6QN14 398 aa13.97□□□□□ -0.17
CSPG4P11-201ENST00000560634 SCN4BQ8IWT1 228 aa13.97□□□□□ -0.17
CSPG4P11-201ENST00000560634 TRABDQ9H4I3 376 aa13.97□□□□□ -0.17
CSPG4P11-201ENST00000560634 UVRAGQ9P2Y5 699 aa13.97□□□□□ -0.17
CSPG4P11-201ENST00000560634 LIMA1Q9UHB6 759 aaKnown RBP13.97□□□□□ -0.17
CSPG4P11-201ENST00000560634 PDIA5Q14554 519 aa13.96□□□□□ -0.17
CSPG4P11-201ENST00000560634 DUOXA2Q1HG44 320 aa13.96□□□□□ -0.17
CSPG4P11-201ENST00000560634 EPN3Q9H201 632 aa13.96□□□□□ -0.17
CSPG4P11-201ENST00000560634 RANBP17Q9H2T7 1088 aaKnown RBP13.96□□□□□ -0.17
CSPG4P11-201ENST00000560634 HDAC6Q9UBN7 1215 aa13.96□□□□□ -0.17
CSPG4P11-201ENST00000560634 RTN2O75298 545 aa13.96□□□□□ -0.17
CSPG4P11-201ENST00000560634 KRT8P05787 483 aa13.96□□□□□ -0.17
CSPG4P11-201ENST00000560634 KCNA2P16389 499 aa13.96□□□□□ -0.17
CSPG4P11-201ENST00000560634 HLA-DPA1P20036 260 aa13.96□□□□□ -0.17
CSPG4P11-201ENST00000560634 SH3RF3Q8TEJ3 882 aaPredicted RBP13.96□□□□□ -0.17
CSPG4P11-201ENST00000560634 RAPGEF5Q92565 580 aa13.96□□□□□ -0.17
CSPG4P11-201ENST00000560634 PPP1R16BQ96T49 567 aa13.96□□□□□ -0.17
CSPG4P11-201ENST00000560634 WDR35Q9P2L0 1181 aa13.96□□□□□ -0.17
CSPG4P11-201ENST00000560634 CCDC195A0A1B0GUA6 201 aa13.96□□□□□ -0.17
CSPG4P11-201ENST00000560634 ATP1A1P05023 1023 aaKnown RBP13.96□□□□□ -0.17
CSPG4P11-201ENST00000560634 ARSEP51690 589 aa13.96□□□□□ -0.17
CSPG4P11-201ENST00000560634 CDH6P55285 790 aa13.96□□□□□ -0.17
CSPG4P11-201ENST00000560634 UGP2Q16851 508 aa13.96□□□□□ -0.17
CSPG4P11-201ENST00000560634 FAM102AQ5T9C2 384 aaPredicted RBP13.96□□□□□ -0.17
CSPG4P11-201ENST00000560634 TWF2Q6IBS0 349 aaKnown RBP13.96□□□□□ -0.17
CSPG4P11-201ENST00000560634 CYB5R4Q7L1T6 521 aa13.96□□□□□ -0.17
CSPG4P11-201ENST00000560634 GPD1LQ8N335 351 aa13.96□□□□□ -0.17
CSPG4P11-201ENST00000560634 OXER1Q8TDS5 423 aa13.96□□□□□ -0.17
CSPG4P11-201ENST00000560634 PDCD6IPQ8WUM4 868 aaKnown RBP13.96□□□□□ -0.17
CSPG4P11-201ENST00000560634 AGPAT1Q99943 283 aa13.96□□□□□ -0.17
CSPG4P11-201ENST00000560634 TIPINQ9BVW5 301 aa13.96□□□□□ -0.17
CSPG4P11-201ENST00000560634 DHX35Q9H5Z1 703 aaKnown RBP13.96□□□□□ -0.17
CSPG4P11-201ENST00000560634 AMACRQ9UHK6 382 aa13.96□□□□□ -0.17
CSPG4P11-201ENST00000560634 ANKARQ7Z5J8 1434 aa13.96□□□□□ -0.17
CSPG4P11-201ENST00000560634 DAB1O75553 588 aa13.96□□□□□ -0.18
CSPG4P11-201ENST00000560634 KRT16P08779 473 aa13.96□□□□□ -0.18
CSPG4P11-201ENST00000560634 ITIH2P19823 946 aa13.96□□□□□ -0.18
CSPG4P11-201ENST00000560634 KRT17Q04695 432 aa13.96□□□□□ -0.18
CSPG4P11-201ENST00000560634 CUL3Q13618 768 aa13.96□□□□□ -0.18
CSPG4P11-201ENST00000560634 TSGA10IPQ3SY00 556 aa13.96□□□□□ -0.18
CSPG4P11-201ENST00000560634 LRRC8EQ6NSJ5 796 aa13.96□□□□□ -0.18
CSPG4P11-201ENST00000560634 PRUNE1Q86TP1 453 aa13.96□□□□□ -0.18
CSPG4P11-201ENST00000560634 SCFD1Q8WVM8 642 aa13.96□□□□□ -0.18
CSPG4P11-201ENST00000560634 THAP11Q96EK4 314 aa13.96□□□□□ -0.18
CSPG4P11-201ENST00000560634 KCNK16Q96T55 309 aa13.96□□□□□ -0.18
CSPG4P11-201ENST00000560634 CCSER1Q9C0I3 900 aa13.96□□□□□ -0.18
CSPG4P11-201ENST00000560634 DCP1AQ9NPI6 582 aaPredicted RBP13.96□□□□□ -0.18
CSPG4P11-201ENST00000560634 ZNF302Q9NR11 478 aa13.96□□□□□ -0.18
CSPG4P11-201ENST00000560634 USP6P35125 1406 aa13.96□□□□□ -0.18
CSPG4P11-201ENST00000560634 NEDD4P46934 1319 aa13.96□□□□□ -0.18
CSPG4P11-201ENST00000560634 FAM95CA0A1B0GW59 222 aa13.95□□□□□ -0.18
CSPG4P11-201ENST00000560634 HNRNPRO43390 633 aaKnown RBP13.95□□□□□ -0.18
CSPG4P11-201ENST00000560634 EPHA7Q15375 998 aa13.95□□□□□ -0.18
CSPG4P11-201ENST00000560634 ZNF746Q6NUN9 644 aaPredicted RBP13.95□□□□□ -0.18
CSPG4P11-201ENST00000560634 PID1Q7Z2X4 250 aa13.95□□□□□ -0.18
CSPG4P11-201ENST00000560634 ASIC4Q96FT7 647 aa13.95□□□□□ -0.18
CSPG4P11-201ENST00000560634 BLOC1S6Q9UL45 172 aa13.95□□□□□ -0.18
CSPG4P11-201ENST00000560634 VSNL1P62760 191 aa13.95□□□□□ -0.18
CSPG4P11-201ENST00000560634 SLC10A4Q96EP9 437 aa13.95□□□□□ -0.18
CSPG4P11-201ENST00000560634 SP110Q9HB58 689 aa13.95□□□□□ -0.18
CSPG4P11-201ENST00000560634 AIPL1Q9NZN9 384 aa13.95□□□□□ -0.18
CSPG4P11-201ENST00000560634 FARP1Q9Y4F1 1045 aaPredicted RBP13.95□□□□□ -0.18
CSPG4P11-201ENST00000560634 SMAPO00193 183 aa13.95□□□□□ -0.18
CSPG4P11-201ENST00000560634 SLC16A3O15427 465 aaKnown RBP13.95□□□□□ -0.18
CSPG4P11-201ENST00000560634 PRR29P0C7W0 189 aa13.95□□□□□ -0.18
CSPG4P11-201ENST00000560634 SCP2P22307 547 aa13.95□□□□□ -0.18
CSPG4P11-201ENST00000560634 TRPC1P48995 793 aa13.95□□□□□ -0.18
CSPG4P11-201ENST00000560634 SERPINB9P50453 376 aa13.95□□□□□ -0.18
CSPG4P11-201ENST00000560634 HSD17B4P51659 736 aa13.95□□□□□ -0.18
CSPG4P11-201ENST00000560634 EFNA5P52803 228 aa13.95□□□□□ -0.18
CSPG4P11-201ENST00000560634 CEP55Q53EZ4 464 aa13.95□□□□□ -0.18
CSPG4P11-201ENST00000560634 DHX40Q8IX18 779 aaKnown RBP13.95□□□□□ -0.18
CSPG4P11-201ENST00000560634 RCOR2Q8IZ40 523 aa13.95□□□□□ -0.18
CSPG4P11-201ENST00000560634 C1orf54Q8WWF1 131 aa13.95□□□□□ -0.18
CSPG4P11-201ENST00000560634 ERVK-7P63135 1459 aa13.95□□□□□ -0.18
CSPG4P11-201ENST00000560634 PITPNM2Q9BZ72 1349 aa13.95□□□□□ -0.18
CSPG4P11-201ENST00000560634 PSMD3O43242 534 aa13.95□□□□□ -0.18
CSPG4P11-201ENST00000560634 FOXD4Q12950 439 aaPredicted RBP13.95□□□□□ -0.18
CSPG4P11-201ENST00000560634 STILQ15468 1287 aa13.95□□□□□ -0.18
CSPG4P11-201ENST00000560634 SLC18A3Q16572 532 aa13.95□□□□□ -0.18
CSPG4P11-201ENST00000560634 TRIM60Q495X7 471 aa13.95□□□□□ -0.18
CSPG4P11-201ENST00000560634 TAGAPQ8N103 731 aa13.95□□□□□ -0.18
CSPG4P11-201ENST00000560634 ASAP3Q8TDY4 903 aa13.95□□□□□ -0.18
CSPG4P11-201ENST00000560634 EPAS1Q99814 870 aa13.95□□□□□ -0.18
CSPG4P11-201ENST00000560634 EMSYQ7Z589 1322 aa13.95□□□□□ -0.18
CSPG4P11-201ENST00000560634 APOL1O14791 398 aa13.94□□□□□ -0.18
CSPG4P11-201ENST00000560634 ANGPT2O15123 496 aa13.94□□□□□ -0.18
CSPG4P11-201ENST00000560634 CNGA3Q16281 694 aa13.94□□□□□ -0.18
CSPG4P11-201ENST00000560634 EFHBQ8N7U6 833 aa13.94□□□□□ -0.18
CSPG4P11-201ENST00000560634 ZNF560Q96MR9 790 aa13.94□□□□□ -0.18
CSPG4P11-201ENST00000560634 SLC24A3Q9HC58 644 aa13.94□□□□□ -0.18
CSPG4P11-201ENST00000560634 SARS2Q9NP81 518 aaKnown RBP13.94□□□□□ -0.18
CSPG4P11-201ENST00000560634 RBAKQ9NYW8 714 aaPredicted RBP13.94□□□□□ -0.18
CSPG4P11-201ENST00000560634 SATB2Q9UPW6 733 aa13.94□□□□□ -0.18
CSPG4P11-201ENST00000560634 USP15Q9Y4E8 981 aaPredicted RBP13.94□□□□□ -0.18
CSPG4P11-201ENST00000560634 UBN2Q6ZU65 1347 aa13.94□□□□□ -0.18
CSPG4P11-201ENST00000560634 DNAJC6O75061 913 aa13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms