RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 KIAA1024Q9UPX6 916 aa11.31□□□□□ -0.6
LDLR-214ENST00000560628 ARIH1Q9Y4X5 557 aaPredicted RBP11.31□□□□□ -0.6
LDLR-214ENST00000560628 PP2D1A8MPX8 630 aa11.3□□□□□ -0.6
LDLR-214ENST00000560628 C2CD4DB7Z1M9 353 aa11.3□□□□□ -0.6
LDLR-214ENST00000560628 INPPL1O15357 1258 aa11.3□□□□□ -0.6
LDLR-214ENST00000560628 NR1I2O75469 434 aa11.3□□□□□ -0.6
LDLR-214ENST00000560628 SOD2P04179 222 aa11.3□□□□□ -0.6
LDLR-214ENST00000560628 CDC25AP30304 524 aa11.3□□□□□ -0.6
LDLR-214ENST00000560628 MTHFRP42898 656 aa11.3□□□□□ -0.6
LDLR-214ENST00000560628 FXR2P51116 673 aaKnown RBP eCLIP11.3□□□□□ -0.6
LDLR-214ENST00000560628 CLCN4P51793 760 aa11.3□□□□□ -0.6
LDLR-214ENST00000560628 PRPF4BQ13523 1007 aaKnown RBP11.3□□□□□ -0.6
LDLR-214ENST00000560628 RABEP1Q15276 862 aa11.3□□□□□ -0.6
LDLR-214ENST00000560628 IL17AQ16552 155 aa11.3□□□□□ -0.6
LDLR-214ENST00000560628 MAPK6Q16659 721 aa11.3□□□□□ -0.6
LDLR-214ENST00000560628 HAUS3Q68CZ6 603 aa11.3□□□□□ -0.6
LDLR-214ENST00000560628 CDCA2Q69YH5 1023 aaPredicted RBP11.3□□□□□ -0.6
LDLR-214ENST00000560628 PPFIBP1Q86W92 1011 aa11.3□□□□□ -0.6
LDLR-214ENST00000560628 B3GALT6Q96L58 329 aa11.3□□□□□ -0.6
LDLR-214ENST00000560628 MFSD14AQ96MC6 490 aa11.3□□□□□ -0.6
LDLR-214ENST00000560628 FBXL18Q96ME1 805 aa11.3□□□□□ -0.6
LDLR-214ENST00000560628 RIPOR3Q96MK2 946 aa11.3□□□□□ -0.6
LDLR-214ENST00000560628 NECTIN4Q96NY8 510 aa11.3□□□□□ -0.6
LDLR-214ENST00000560628 RPS6KC1Q96S38 1066 aa11.3□□□□□ -0.6
LDLR-214ENST00000560628 KIFC3Q9BVG8 833 aa11.3□□□□□ -0.6
LDLR-214ENST00000560628 DDX19AQ9NUU7 478 aaKnown RBP11.3□□□□□ -0.6
LDLR-214ENST00000560628 SNTG2Q9NY99 539 aa11.3□□□□□ -0.6
LDLR-214ENST00000560628 NR2E1Q9Y466 385 aa11.3□□□□□ -0.6
LDLR-214ENST00000560628 TECTAO75443 2155 aa11.29□□□□□ -0.6
LDLR-214ENST00000560628 N4BP3O15049 544 aa11.29□□□□□ -0.6
LDLR-214ENST00000560628 TEX28O15482 410 aa11.29□□□□□ -0.6
LDLR-214ENST00000560628 ST18O60284 1047 aa11.29□□□□□ -0.6
LDLR-214ENST00000560628 TADA2AO75478 443 aa11.29□□□□□ -0.6
LDLR-214ENST00000560628 EDN1P05305 212 aa11.29□□□□□ -0.6
LDLR-214ENST00000560628 PRKCBP05771 671 aa11.29□□□□□ -0.6
LDLR-214ENST00000560628 URODP06132 367 aa11.29□□□□□ -0.6
LDLR-214ENST00000560628 SPATA31D3P0C874 917 aa11.29□□□□□ -0.6
LDLR-214ENST00000560628 NAMPTP43490 491 aa11.29□□□□□ -0.6
LDLR-214ENST00000560628 PDIA5Q14554 519 aa11.29□□□□□ -0.6
LDLR-214ENST00000560628 PTPN21Q16825 1174 aa11.29□□□□□ -0.6
LDLR-214ENST00000560628 FAM187BQ17R55 369 aa11.29□□□□□ -0.6
LDLR-214ENST00000560628 KIAA0319Q5VV43 1072 aa11.29□□□□□ -0.6
LDLR-214ENST00000560628 EEF1DP3Q658K8 133 aa11.29□□□□□ -0.6
LDLR-214ENST00000560628 KIAA1841Q6NSI8 718 aa11.29□□□□□ -0.6
LDLR-214ENST00000560628 PPP4R3CPQ6ZMV5 832 aa11.29□□□□□ -0.6
LDLR-214ENST00000560628 SPATA31D4Q6ZUB0 917 aa11.29□□□□□ -0.6
LDLR-214ENST00000560628 KREMEN2Q8NCW0 462 aa11.29□□□□□ -0.6
LDLR-214ENST00000560628 SNX29Q8TEQ0 813 aa11.29□□□□□ -0.6
LDLR-214ENST00000560628 TMX3Q96JJ7 454 aa11.29□□□□□ -0.6
LDLR-214ENST00000560628 IFT74Q96LB3 600 aa11.29□□□□□ -0.6
LDLR-214ENST00000560628 PRIMPOLQ96LW4 560 aa11.29□□□□□ -0.6
LDLR-214ENST00000560628 HERC2P3Q9BVR0 1158 aa11.29□□□□□ -0.6
LDLR-214ENST00000560628 GPR62Q9BZJ7 368 aa11.29□□□□□ -0.6
LDLR-214ENST00000560628 C2orf40Q9H1Z8 148 aa11.29□□□□□ -0.6
LDLR-214ENST00000560628 CXCL16Q9H2A7 254 aa11.29□□□□□ -0.6
LDLR-214ENST00000560628 PDZD7Q9H5P4 517 aa11.29□□□□□ -0.6
LDLR-214ENST00000560628 STK39Q9UEW8 545 aa11.29□□□□□ -0.6
LDLR-214ENST00000560628 LIMD1Q9UGP4 676 aa11.29□□□□□ -0.6
LDLR-214ENST00000560628 ARID2Q68CP9 1835 aa11.29□□□□□ -0.6
LDLR-214ENST00000560628 CCDC169A6NNP5 214 aa11.28□□□□□ -0.6
LDLR-214ENST00000560628 E9PMD0 336 aa11.28□□□□□ -0.6
LDLR-214ENST00000560628 ACKR2O00590 384 aa11.28□□□□□ -0.6
LDLR-214ENST00000560628 CD2BP2O95400 341 aaKnown RBP11.28□□□□□ -0.6
LDLR-214ENST00000560628 EFEMP2O95967 443 aa11.28□□□□□ -0.6
LDLR-214ENST00000560628 ASGR2P07307 311 aa11.28□□□□□ -0.6
LDLR-214ENST00000560628 MUTP22033 750 aa11.28□□□□□ -0.6
LDLR-214ENST00000560628 GLUD2P49448 558 aa11.28□□□□□ -0.6
LDLR-214ENST00000560628 GRIK3Q13003 919 aa11.28□□□□□ -0.6
LDLR-214ENST00000560628 PPP2R5AQ15172 486 aa11.28□□□□□ -0.6
LDLR-214ENST00000560628 ZRSR1Q15695 479 aaKnown RBP11.28□□□□□ -0.6
LDLR-214ENST00000560628 NT5DC1Q5TFE4 455 aa11.28□□□□□ -0.6
LDLR-214ENST00000560628 KRT79Q5XKE5 535 aa11.28□□□□□ -0.6
LDLR-214ENST00000560628 FUT10Q6P4F1 479 aa11.28□□□□□ -0.6
LDLR-214ENST00000560628 DTHD1Q6ZMT9 781 aa11.28□□□□□ -0.6
LDLR-214ENST00000560628 BMP8AQ7Z5Y6 402 aa11.28□□□□□ -0.6
LDLR-214ENST00000560628 GPR149Q86SP6 731 aa11.28□□□□□ -0.6
LDLR-214ENST00000560628 PALB2Q86YC2 1186 aa11.28□□□□□ -0.6
LDLR-214ENST00000560628 GLYCTKQ8IVS8 523 aa11.28□□□□□ -0.6
LDLR-214ENST00000560628 IGSF22Q8N9C0 903 aa11.28□□□□□ -0.6
LDLR-214ENST00000560628 PAAF1Q9BRP4 392 aa11.28□□□□□ -0.6
LDLR-214ENST00000560628 RAB34Q9BZG1 259 aa11.28□□□□□ -0.6
LDLR-214ENST00000560628 CCDC113Q9H0I3 377 aa11.28□□□□□ -0.6
LDLR-214ENST00000560628 SMOC2Q9H3U7 446 aa11.28□□□□□ -0.6
LDLR-214ENST00000560628 SFXN1Q9H9B4 322 aa11.28□□□□□ -0.6
LDLR-214ENST00000560628 DNM3Q9UQ16 869 aa11.28□□□□□ -0.6
LDLR-214ENST00000560628 SSX2IPQ9Y2D8 614 aa11.28□□□□□ -0.6
LDLR-214ENST00000560628 GDAQ9Y2T3 454 aa11.28□□□□□ -0.6
LDLR-214ENST00000560628 CCDC195A0A1B0GUA6 201 aa11.27□□□□□ -0.61
LDLR-214ENST00000560628 CASTOR2A6NHX0 329 aa11.27□□□□□ -0.61
LDLR-214ENST00000560628 SFI1A8K8P3 1242 aa11.27□□□□□ -0.61
LDLR-214ENST00000560628 H3BQV1 296 aa11.27□□□□□ -0.61
LDLR-214ENST00000560628 K7ERI5 159 aa11.27□□□□□ -0.61
LDLR-214ENST00000560628 PTGESO14684 152 aa11.27□□□□□ -0.61
LDLR-214ENST00000560628 RECQL4O94761 1208 aa11.27□□□□□ -0.61
LDLR-214ENST00000560628 ADH1AP07327 375 aa11.27□□□□□ -0.61
LDLR-214ENST00000560628 RPL17P18621 184 aaKnown RBP11.27□□□□□ -0.61
LDLR-214ENST00000560628 GJB2P29033 226 aa11.27□□□□□ -0.61
LDLR-214ENST00000560628 PEX3P56589 373 aa11.27□□□□□ -0.61
LDLR-214ENST00000560628 DSG1Q02413 1049 aa11.27□□□□□ -0.61
LDLR-214ENST00000560628 SIGLEC14Q08ET2 396 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms