RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 TTC3P53804 2025 aa11.01□□□□□ -0.65
USP3-216ENST00000559873 CARNS1A5YM72 827 aa11.01□□□□□ -0.65
USP3-216ENST00000559873 PSMA7O14818 248 aa11.01□□□□□ -0.65
USP3-216ENST00000559873 TNRC18O15417 2968 aaPredicted RBP11.01□□□□□ -0.65
USP3-216ENST00000559873 UPP2O95045 317 aa11.01□□□□□ -0.65
USP3-216ENST00000559873 LDHAP00338 332 aaKnown RBP11.01□□□□□ -0.65
USP3-216ENST00000559873 EDN1P05305 212 aa11.01□□□□□ -0.65
USP3-216ENST00000559873 GARTP22102 1010 aa11.01□□□□□ -0.65
USP3-216ENST00000559873 PROZP22891 400 aa11.01□□□□□ -0.65
USP3-216ENST00000559873 GRM5P41594 1212 aa11.01□□□□□ -0.65
USP3-216ENST00000559873 SMAD3P84022 425 aaKnown RBP11.01□□□□□ -0.65
USP3-216ENST00000559873 MCL1Q07820 350 aa11.01□□□□□ -0.65
USP3-216ENST00000559873 KNOP1Q1ED39 458 aaKnown RBP11.01□□□□□ -0.65
USP3-216ENST00000559873 KLHL40Q2TBA0 621 aa11.01□□□□□ -0.65
USP3-216ENST00000559873 LRIT3Q3SXY7 679 aa11.01□□□□□ -0.65
USP3-216ENST00000559873 EEF1DP3Q658K8 133 aa11.01□□□□□ -0.65
USP3-216ENST00000559873 FAM117BQ6P1L5 589 aa11.01□□□□□ -0.65
USP3-216ENST00000559873 ARMCX5Q6P1M9 558 aa11.01□□□□□ -0.65
USP3-216ENST00000559873 MRPL10Q7Z7H8 261 aaKnown RBP11.01□□□□□ -0.65
USP3-216ENST00000559873 ZBTB33Q86T24 672 aa11.01□□□□□ -0.65
USP3-216ENST00000559873 RTN4RL1Q86UN2 441 aaPredicted RBP11.01□□□□□ -0.65
USP3-216ENST00000559873 CDR2LQ86X02 465 aaPredicted RBP11.01□□□□□ -0.65
USP3-216ENST00000559873 CMTR2Q8IYT2 770 aaKnown RBP11.01□□□□□ -0.65
USP3-216ENST00000559873 LRRC43Q8N309 656 aa11.01□□□□□ -0.65
USP3-216ENST00000559873 GUF1Q8N442 669 aaKnown RBP11.01□□□□□ -0.65
USP3-216ENST00000559873 KIAA0895Q8NCT3 520 aa11.01□□□□□ -0.65
USP3-216ENST00000559873 RAD9AQ99638 391 aa11.01□□□□□ -0.65
USP3-216ENST00000559873 TSG101Q99816 390 aa11.01□□□□□ -0.65
USP3-216ENST00000559873 APOL6Q9BWW8 343 aa11.01□□□□□ -0.65
USP3-216ENST00000559873 EIF2AQ9BY44 585 aaKnown RBP11.01□□□□□ -0.65
USP3-216ENST00000559873 FGFBP2Q9BYJ0 223 aa11.01□□□□□ -0.65
USP3-216ENST00000559873 TMEM117Q9H0C3 514 aa11.01□□□□□ -0.65
USP3-216ENST00000559873 NXF3Q9H4D5 531 aaKnown RBP11.01□□□□□ -0.65
USP3-216ENST00000559873 PTPRHQ9HD43 1115 aa11.01□□□□□ -0.65
USP3-216ENST00000559873 TYW1Q9NV66 732 aaKnown RBP11.01□□□□□ -0.65
USP3-216ENST00000559873 DACH1Q9UI36 760 aa11.01□□□□□ -0.65
USP3-216ENST00000559873 GIT1Q9Y2X7 761 aa11.01□□□□□ -0.65
USP3-216ENST00000559873 PCDHA11Q9Y5I1 949 aa11.01□□□□□ -0.65
USP3-216ENST00000559873 GTF3C5Q9Y5Q8 519 aaPredicted RBP11.01□□□□□ -0.65
USP3-216ENST00000559873 STYXL1Q9Y6J8 313 aa11.01□□□□□ -0.65
USP3-216ENST00000559873 COL4A6Q14031 1691 aa11.01□□□□□ -0.65
USP3-216ENST00000559873 RANBP2P49792 3224 aaKnown RBP11□□□□□ -0.65
USP3-216ENST00000559873 TTLL13PA6NNM8 815 aa11□□□□□ -0.65
USP3-216ENST00000559873 PDXKO00764 312 aa11□□□□□ -0.65
USP3-216ENST00000559873 OGTO15294 1046 aa11□□□□□ -0.65
USP3-216ENST00000559873 CALUO43852 315 aaPredicted RBP11□□□□□ -0.65
USP3-216ENST00000559873 BTG3Q14201 252 aaPredicted RBP11□□□□□ -0.65
USP3-216ENST00000559873 COBLL1Q53SF7 1204 aa11□□□□□ -0.65
USP3-216ENST00000559873 ZNF598Q86UK7 904 aaKnown RBP11□□□□□ -0.65
USP3-216ENST00000559873 NELFCDQ8IXH7 590 aa11□□□□□ -0.65
USP3-216ENST00000559873 THNSL1Q8IYQ7 743 aa11□□□□□ -0.65
USP3-216ENST00000559873 ACAP3Q96P50 834 aa11□□□□□ -0.65
USP3-216ENST00000559873 KANSL3Q9P2N6 904 aa11□□□□□ -0.65
USP3-216ENST00000559873 PARP2Q9UGN5 583 aa11□□□□□ -0.65
USP3-216ENST00000559873 MAN1B1Q9UKM7 699 aa11□□□□□ -0.65
USP3-216ENST00000559873 AGO2Q9UKV8 859 aaKnown RBP11□□□□□ -0.65
USP3-216ENST00000559873 USP20Q9Y2K6 914 aa11□□□□□ -0.65
USP3-216ENST00000559873 GDAQ9Y2T3 454 aa11□□□□□ -0.65
USP3-216ENST00000559873 RWDD3Q9Y3V2 267 aa11□□□□□ -0.65
USP3-216ENST00000559873 A0A0B4J269 797 aa10.99□□□□□ -0.65
USP3-216ENST00000559873 TBKBP1A7MCY6 615 aa10.99□□□□□ -0.65
USP3-216ENST00000559873 ABLIM1O14639 778 aa10.99□□□□□ -0.65
USP3-216ENST00000559873 DGKIO75912 1065 aa10.99□□□□□ -0.65
USP3-216ENST00000559873 RECQL4O94761 1208 aa10.99□□□□□ -0.65
USP3-216ENST00000559873 CLTAP09496 248 aa10.99□□□□□ -0.65
USP3-216ENST00000559873 ATF7P17544 494 aaPredicted RBP10.99□□□□□ -0.65
USP3-216ENST00000559873 RPL13P26373 211 aaKnown RBP10.99□□□□□ -0.65
USP3-216ENST00000559873 HTRA4P83105 476 aaPredicted RBP10.99□□□□□ -0.65
USP3-216ENST00000559873 POU5F1Q01860 360 aaKnown RBP10.99□□□□□ -0.65
USP3-216ENST00000559873 PPP2R3AQ06190 1150 aa10.99□□□□□ -0.65
USP3-216ENST00000559873 KCNA1Q09470 495 aa10.99□□□□□ -0.65
USP3-216ENST00000559873 MORC3Q14149 939 aa10.99□□□□□ -0.65
USP3-216ENST00000559873 CD302Q8IX05 232 aa10.99□□□□□ -0.65
USP3-216ENST00000559873 C12orf56Q8IXR9 622 aa10.99□□□□□ -0.65
USP3-216ENST00000559873 SMG8Q8ND04 991 aaKnown RBP10.99□□□□□ -0.65
USP3-216ENST00000559873 GLIS3Q8NEA6 775 aa10.99□□□□□ -0.65
USP3-216ENST00000559873 HELQQ8TDG4 1101 aa10.99□□□□□ -0.65
USP3-216ENST00000559873 ERCC4Q92889 916 aaPredicted RBP10.99□□□□□ -0.65
USP3-216ENST00000559873 KIAA1586Q9HCI6 787 aa10.99□□□□□ -0.65
USP3-216ENST00000559873 AAASQ9NRG9 546 aa10.99□□□□□ -0.65
USP3-216ENST00000559873 AGPAT3Q9NRZ7 376 aa10.99□□□□□ -0.65
USP3-216ENST00000559873 SNTG2Q9NY99 539 aa10.99□□□□□ -0.65
USP3-216ENST00000559873 INPP5FQ9Y2H2 1132 aa10.99□□□□□ -0.65
USP3-216ENST00000559873 TMEM265A0A087WTH1 108 aa10.98□□□□□ -0.65
USP3-216ENST00000559873 BICDL2A1A5D9 508 aa10.98□□□□□ -0.65
USP3-216ENST00000559873 ANKRD63C9JTQ0 380 aa10.98□□□□□ -0.65
USP3-216ENST00000559873 BIN1O00499 593 aa10.98□□□□□ -0.65
USP3-216ENST00000559873 XPOTO43592 962 aaKnown RBP10.98□□□□□ -0.65
USP3-216ENST00000559873 LETM1O95202 739 aaPredicted RBP10.98□□□□□ -0.65
USP3-216ENST00000559873 FGFR1P11362 822 aa10.98□□□□□ -0.65
USP3-216ENST00000559873 MLH1P40692 756 aa10.98□□□□□ -0.65
USP3-216ENST00000559873 OSTNP61366 133 aa10.98□□□□□ -0.65
USP3-216ENST00000559873 RNASELQ05823 741 aaKnown RBP10.98□□□□□ -0.65
USP3-216ENST00000559873 LRRC63Q05C16 580 aa10.98□□□□□ -0.65
USP3-216ENST00000559873 GRIK3Q13003 919 aa10.98□□□□□ -0.65
USP3-216ENST00000559873 MYBPC2Q14324 1141 aa10.98□□□□□ -0.65
USP3-216ENST00000559873 NOMO2Q5JPE7 1267 aa10.98□□□□□ -0.65
USP3-216ENST00000559873 CAVIN1Q6NZI2 390 aaKnown RBP10.98□□□□□ -0.65
USP3-216ENST00000559873 SLC39A4Q6P5W5 647 aa10.98□□□□□ -0.65
USP3-216ENST00000559873 SASS6Q6UVJ0 657 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms