RNA–Protein interactions for RNA: ENST00000559192.5

USP3-210, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 5,499 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-210ENST00000559192 COILP38432 576 aaPredicted RBP7.57□□□□□ -1.2
USP3-210ENST00000559192 MKRN3Q13064 507 aaKnown RBP7.57□□□□□ -1.2
USP3-210ENST00000559192 MAPK7Q13164 816 aa7.57□□□□□ -1.2
USP3-210ENST00000559192 AADACL2Q6P093 401 aa7.57□□□□□ -1.2
USP3-210ENST00000559192 TRMT10CQ7L0Y3 403 aaKnown RBP7.57□□□□□ -1.2
USP3-210ENST00000559192 COL23A1Q86Y22 540 aaPredicted RBP7.57□□□□□ -1.2
USP3-210ENST00000559192 DEPTORQ8TB45 409 aa7.57□□□□□ -1.2
USP3-210ENST00000559192 CCT6BQ92526 530 aa7.57□□□□□ -1.2
USP3-210ENST00000559192 TTC1Q99614 292 aa7.57□□□□□ -1.2
USP3-210ENST00000559192 UBXN6Q9BZV1 441 aa7.57□□□□□ -1.2
USP3-210ENST00000559192 CCDC68Q9H2F9 335 aa7.57□□□□□ -1.2
USP3-210ENST00000559192 SEMA4AQ9H3S1 761 aa7.57□□□□□ -1.2
USP3-210ENST00000559192 CCPG1Q9ULG6 757 aa7.57□□□□□ -1.2
USP3-210ENST00000559192 ABCC6O95255 1503 aa7.57□□□□□ -1.2
USP3-210ENST00000559192 AFDNP55196 1824 aaKnown RBP7.57□□□□□ -1.2
USP3-210ENST00000559192 ZNF263O14978 683 aa7.57□□□□□ -1.2
USP3-210ENST00000559192 PJA2O43164 708 aa7.57□□□□□ -1.2
USP3-210ENST00000559192 SH3BP5O60239 455 aa7.57□□□□□ -1.2
USP3-210ENST00000559192 ARFIP2P53365 341 aa7.57□□□□□ -1.2
USP3-210ENST00000559192 MRPS9P82933 396 aaKnown RBP7.57□□□□□ -1.2
USP3-210ENST00000559192 AP3B2Q13367 1082 aa7.57□□□□□ -1.2
USP3-210ENST00000559192 GRAPQ13588 217 aa7.57□□□□□ -1.2
USP3-210ENST00000559192 C1orf146Q5VVC0 180 aa7.57□□□□□ -1.2
USP3-210ENST00000559192 DNAJC24Q6P3W2 148 aa7.57□□□□□ -1.2
USP3-210ENST00000559192 C16orf87Q6PH81 154 aa7.57□□□□□ -1.2
USP3-210ENST00000559192 PIP4K2CQ8TBX8 421 aa7.57□□□□□ -1.2
USP3-210ENST00000559192 GRAPLQ8TC17 118 aaPredicted RBP7.57□□□□□ -1.2
USP3-210ENST00000559192 NLRP7Q8WX94 980 aa7.57□□□□□ -1.2
USP3-210ENST00000559192 CPA5Q8WXQ8 436 aa7.57□□□□□ -1.2
USP3-210ENST00000559192 ATG4AQ8WYN0 398 aa7.57□□□□□ -1.2
USP3-210ENST00000559192 HSPH1Q92598 858 aa7.57□□□□□ -1.2
USP3-210ENST00000559192 MTRQ99707 1265 aa7.57□□□□□ -1.2
USP3-210ENST00000559192 NUDT12Q9BQG2 462 aa7.57□□□□□ -1.2
USP3-210ENST00000559192 SH2D3AQ9BRG2 576 aa7.57□□□□□ -1.2
USP3-210ENST00000559192 IL17RBQ9NRM6 502 aa7.57□□□□□ -1.2
USP3-210ENST00000559192 ABCF3Q9NUQ8 709 aa7.57□□□□□ -1.2
USP3-210ENST00000559192 SEPT9Q9UHD8 586 aaPredicted RBP7.57□□□□□ -1.2
USP3-210ENST00000559192 G3BP2Q9UN86 482 aaKnown RBP7.57□□□□□ -1.2
USP3-210ENST00000559192 FLT1P17948 1338 aa7.57□□□□□ -1.2
USP3-210ENST00000559192 NTSR2O95665 410 aa7.56□□□□□ -1.2
USP3-210ENST00000559192 CCDC159P0C7I6 412 aa7.56□□□□□ -1.2
USP3-210ENST00000559192 UBTFL6P0CB48 400 aaPredicted RBP7.56□□□□□ -1.2
USP3-210ENST00000559192 FLT3P36888 993 aa7.56□□□□□ -1.2
USP3-210ENST00000559192 PRELPP51888 382 aa7.56□□□□□ -1.2
USP3-210ENST00000559192 DNAJC3Q13217 504 aa7.56□□□□□ -1.2
USP3-210ENST00000559192 CCDC14Q49A88 953 aa7.56□□□□□ -1.2
USP3-210ENST00000559192 BRDTQ58F21 947 aaPredicted RBP7.56□□□□□ -1.2
USP3-210ENST00000559192 DARS2Q6PI48 645 aaKnown RBP7.56□□□□□ -1.2
USP3-210ENST00000559192 SCARA5Q6ZMJ2 495 aa7.56□□□□□ -1.2
USP3-210ENST00000559192 LRRIQ4A6NIV6 560 aa7.56□□□□□ -1.2
USP3-210ENST00000559192 PI4K2BG5E9Z4 385 aa7.56□□□□□ -1.2
USP3-210ENST00000559192 MED24O75448 989 aa7.56□□□□□ -1.2
USP3-210ENST00000559192 CRCPO75575 148 aa7.56□□□□□ -1.2
USP3-210ENST00000559192 NCF2P19878 526 aaPredicted RBP7.56□□□□□ -1.2
USP3-210ENST00000559192 SAT1P21673 171 aa7.56□□□□□ -1.2
USP3-210ENST00000559192 PSMD7P51665 324 aa7.56□□□□□ -1.2
USP3-210ENST00000559192 CAV1Q03135 178 aa7.56□□□□□ -1.2
USP3-210ENST00000559192 SMAD1Q15797 465 aaKnown RBP7.56□□□□□ -1.2
USP3-210ENST00000559192 SLC30A9Q6PML9 568 aa7.56□□□□□ -1.2
USP3-210ENST00000559192 PADI6Q6TGC4 694 aa7.56□□□□□ -1.2
USP3-210ENST00000559192 NLRX1Q86UT6 975 aa7.56□□□□□ -1.2
USP3-210ENST00000559192 CATSPER3Q86XQ3 398 aa7.56□□□□□ -1.2
USP3-210ENST00000559192 VGLL2Q8N8G2 317 aa7.56□□□□□ -1.2
USP3-210ENST00000559192 SCFD1Q8WVM8 642 aa7.56□□□□□ -1.2
USP3-210ENST00000559192 DNAJC9Q8WXX5 260 aa7.56□□□□□ -1.2
USP3-210ENST00000559192 VTI1AQ96AJ9 217 aa7.56□□□□□ -1.2
USP3-210ENST00000559192 RMDN2Q96LZ7 410 aa7.56□□□□□ -1.2
USP3-210ENST00000559192 PNMA5Q96PV4 448 aa7.56□□□□□ -1.2
USP3-210ENST00000559192 TUBB6Q9BUF5 446 aa7.56□□□□□ -1.2
USP3-210ENST00000559192 DBNDD1Q9H9R9 158 aa7.56□□□□□ -1.2
USP3-210ENST00000559192 LPXNO60711 386 aa7.56□□□□□ -1.2
USP3-210ENST00000559192 CAMTA2O94983 1202 aa7.56□□□□□ -1.2
USP3-210ENST00000559192 GHRP10912 638 aa7.56□□□□□ -1.2
USP3-210ENST00000559192 ARSEP51690 589 aa7.56□□□□□ -1.2
USP3-210ENST00000559192 SNX16P57768 344 aa7.56□□□□□ -1.2
USP3-210ENST00000559192 TMPRSS15P98073 1019 aa7.56□□□□□ -1.2
USP3-210ENST00000559192 EDRF1Q3B7T1 1238 aa7.56□□□□□ -1.2
USP3-210ENST00000559192 PPP1R3FQ6ZSY5 799 aaPredicted RBP7.56□□□□□ -1.2
USP3-210ENST00000559192 KCTD6Q8NC69 237 aa7.56□□□□□ -1.2
USP3-210ENST00000559192 SH3GL2Q99962 352 aa7.56□□□□□ -1.2
USP3-210ENST00000559192 RUSC1Q9BVN2 902 aa7.56□□□□□ -1.2
USP3-210ENST00000559192 CALN1Q9BXU9 219 aa7.56□□□□□ -1.2
USP3-210ENST00000559192 MRPL47Q9HD33 250 aaKnown RBP7.56□□□□□ -1.2
USP3-210ENST00000559192 DLGAP2Q9P1A6 1054 aa7.56□□□□□ -1.2
USP3-210ENST00000559192 MCM8Q9UJA3 840 aa7.56□□□□□ -1.2
USP3-210ENST00000559192 MAGED2Q9UNF1 606 aaPredicted RBP7.56□□□□□ -1.2
USP3-210ENST00000559192 PPEF1O14829 653 aaPredicted RBP7.56□□□□□ -1.2
USP3-210ENST00000559192 NVLO15381 856 aaKnown RBP7.56□□□□□ -1.2
USP3-210ENST00000559192 KCNA3P22001 575 aa7.56□□□□□ -1.2
USP3-210ENST00000559192 STAT2P52630 851 aa7.56□□□□□ -1.2
USP3-210ENST00000559192 GPSM2P81274 684 aa7.56□□□□□ -1.2
USP3-210ENST00000559192 LRRC36Q1X8D7 754 aa7.56□□□□□ -1.2
USP3-210ENST00000559192 ZNF394Q53GI3 561 aa7.56□□□□□ -1.2
USP3-210ENST00000559192 LMBRD2Q68DH5 695 aaPredicted RBP7.56□□□□□ -1.2
USP3-210ENST00000559192 MAP7D3Q8IWC1 876 aa7.56□□□□□ -1.2
USP3-210ENST00000559192 ZNF513Q8N8E2 541 aaPredicted RBP7.56□□□□□ -1.2
USP3-210ENST00000559192 GRAMD1AQ96CP6 724 aa7.56□□□□□ -1.2
USP3-210ENST00000559192 DTNBP1Q96EV8 351 aa7.56□□□□□ -1.2
USP3-210ENST00000559192 TMEM237Q96Q45 408 aa7.56□□□□□ -1.2
USP3-210ENST00000559192 KLF6Q99612 283 aaPredicted RBP7.56□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms