RNA–Protein interactions for RNA: ENST00000557548.1

TRAV28-201, Transcript of T cell receptor alpha variable 28 (pseudogene), humanhuman

BASIC

Gene TRAV28, Length 323 nt, Biotype TR V pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV28-201ENST00000557548 TMEM127O75204 238 aa3.8□□□□□ -1.8
TRAV28-201ENST00000557548 SEC24DO94855 1032 aaPredicted RBP3.8□□□□□ -1.8
TRAV28-201ENST00000557548 HPXP02790 462 aa3.8□□□□□ -1.8
TRAV28-201ENST00000557548 RPLP2P05387 115 aaKnown RBP3.8□□□□□ -1.8
TRAV28-201ENST00000557548 SRGNP10124 158 aa3.8□□□□□ -1.8
TRAV28-201ENST00000557548 KITP10721 976 aa3.8□□□□□ -1.8
TRAV28-201ENST00000557548 SYN1P17600 705 aa3.8□□□□□ -1.8
TRAV28-201ENST00000557548 SLC7A1P30825 629 aa3.8□□□□□ -1.8
TRAV28-201ENST00000557548 TECP42680 631 aa3.8□□□□□ -1.8
TRAV28-201ENST00000557548 CCT5P48643 541 aa3.8□□□□□ -1.8
TRAV28-201ENST00000557548 NKX6-1P78426 367 aaPredicted RBP3.8□□□□□ -1.8
TRAV28-201ENST00000557548 PRR5P85299 388 aa3.8□□□□□ -1.8
TRAV28-201ENST00000557548 SLC4A8Q2Y0W8 1093 aa3.8□□□□□ -1.8
TRAV28-201ENST00000557548 CCDC38Q502W7 563 aa3.8□□□□□ -1.8
TRAV28-201ENST00000557548 TLDC1Q6P9B6 456 aa3.8□□□□□ -1.8
TRAV28-201ENST00000557548 RPTNQ6XPR3 784 aa3.8□□□□□ -1.8
TRAV28-201ENST00000557548 TMC6Q7Z403 805 aa3.8□□□□□ -1.8
TRAV28-201ENST00000557548 BMP8AQ7Z5Y6 402 aa3.8□□□□□ -1.8
TRAV28-201ENST00000557548 MIB1Q86YT6 1006 aa3.8□□□□□ -1.8
TRAV28-201ENST00000557548 SIAH1Q8IUQ4 282 aa3.8□□□□□ -1.8
TRAV28-201ENST00000557548 NME8Q8N427 588 aa3.8□□□□□ -1.8
TRAV28-201ENST00000557548 C3orf20Q8ND61 904 aa3.8□□□□□ -1.8
TRAV28-201ENST00000557548 WDR48Q8TAF3 677 aa3.8□□□□□ -1.8
TRAV28-201ENST00000557548 IGDCC4Q8TDY8 1250 aa3.8□□□□□ -1.8
TRAV28-201ENST00000557548 ANKS1AQ92625 1134 aa3.8□□□□□ -1.8
TRAV28-201ENST00000557548 SHISA4Q96DD7 197 aa3.8□□□□□ -1.8
TRAV28-201ENST00000557548 CCDC120Q96HB5 630 aa3.8□□□□□ -1.8
TRAV28-201ENST00000557548 CLPTM1LQ96KA5 538 aa3.8□□□□□ -1.8
TRAV28-201ENST00000557548 SAMD11Q96NU1 681 aa3.8□□□□□ -1.8
TRAV28-201ENST00000557548 BTBD2Q9BX70 525 aa3.8□□□□□ -1.8
TRAV28-201ENST00000557548 MYLK2Q9H1R3 596 aa3.8□□□□□ -1.8
TRAV28-201ENST00000557548 ZNF287Q9HBT7 754 aa3.8□□□□□ -1.8
TRAV28-201ENST00000557548 PNPLA8Q9NP80 782 aa3.8□□□□□ -1.8
TRAV28-201ENST00000557548 TDP1Q9NUW8 608 aa3.8□□□□□ -1.8
TRAV28-201ENST00000557548 C19orf73Q9NVV2 129 aa3.8□□□□□ -1.8
TRAV28-201ENST00000557548 MAP3K20Q9NYL2 800 aaKnown RBP3.8□□□□□ -1.8
TRAV28-201ENST00000557548 ABCF2Q9UG63 623 aa3.8□□□□□ -1.8
TRAV28-201ENST00000557548 NOL12Q9UGY1 213 aaKnown RBP eCLIP3.8□□□□□ -1.8
TRAV28-201ENST00000557548 CPA4Q9UI42 421 aa3.8□□□□□ -1.8
TRAV28-201ENST00000557548 FBXO9Q9UK97 447 aaPredicted RBP3.8□□□□□ -1.8
TRAV28-201ENST00000557548 OGDHLQ9ULD0 1010 aa3.8□□□□□ -1.8
TRAV28-201ENST00000557548 PADI4Q9UM07 663 aa3.8□□□□□ -1.8
TRAV28-201ENST00000557548 A0A0A6YYK5 440 aaPredicted RBP3.79□□□□□ -1.8
TRAV28-201ENST00000557548 F8W8V4 182 aa3.79□□□□□ -1.8
TRAV28-201ENST00000557548 FOXN3O00409 490 aaPredicted RBP3.79□□□□□ -1.8
TRAV28-201ENST00000557548 DDX3XO00571 662 aaKnown RBP eCLIP3.79□□□□□ -1.8
TRAV28-201ENST00000557548 SGTAO43765 313 aa3.79□□□□□ -1.8
TRAV28-201ENST00000557548 CUTAO60888 179 aa3.79□□□□□ -1.8
TRAV28-201ENST00000557548 HARSP12081 509 aaKnown RBP3.79□□□□□ -1.8
TRAV28-201ENST00000557548 TYRP14679 529 aa3.79□□□□□ -1.8
TRAV28-201ENST00000557548 BRAFP15056 766 aa3.79□□□□□ -1.8
TRAV28-201ENST00000557548 BDNFP23560 247 aa3.79□□□□□ -1.8
TRAV28-201ENST00000557548 ADSLP30566 484 aaPredicted RBP3.79□□□□□ -1.8
TRAV28-201ENST00000557548 GLRBP48167 497 aa3.79□□□□□ -1.8
TRAV28-201ENST00000557548 IL13RA1P78552 427 aa3.79□□□□□ -1.8
TRAV28-201ENST00000557548 CDC42EP1Q00587 391 aa3.79□□□□□ -1.8
TRAV28-201ENST00000557548 ICA1Q05084 483 aa3.79□□□□□ -1.8
TRAV28-201ENST00000557548 TARDBPQ13148 414 aaKnown RBP eCLIP3.79□□□□□ -1.8
TRAV28-201ENST00000557548 BLMHQ13867 455 aa3.79□□□□□ -1.8
TRAV28-201ENST00000557548 STARD3Q14849 445 aa3.79□□□□□ -1.8
TRAV28-201ENST00000557548 RAB3GAP1Q15042 981 aa3.79□□□□□ -1.8
TRAV28-201ENST00000557548 MAPRE1Q15691 268 aaKnown RBP3.79□□□□□ -1.8
TRAV28-201ENST00000557548 CNGA2Q16280 664 aa3.79□□□□□ -1.8
TRAV28-201ENST00000557548 SKIDA1Q1XH10 827 aa3.79□□□□□ -1.8
TRAV28-201ENST00000557548 CR1LQ2VPA4 569 aa3.79□□□□□ -1.8
TRAV28-201ENST00000557548 PLEKHN1Q494U1 663 aaPredicted RBP3.79□□□□□ -1.8
TRAV28-201ENST00000557548 KHDC1Q4VXA5 237 aaKnown RBP3.79□□□□□ -1.8
TRAV28-201ENST00000557548 PHF19Q5T6S3 580 aa3.79□□□□□ -1.8
TRAV28-201ENST00000557548 KLHDC7AQ5VTJ3 777 aa3.79□□□□□ -1.8
TRAV28-201ENST00000557548 KANK2Q63ZY3 851 aa3.79□□□□□ -1.8
TRAV28-201ENST00000557548 HIBCHQ6NVY1 386 aaPredicted RBP3.79□□□□□ -1.8
TRAV28-201ENST00000557548 ETV3LQ6ZN32 361 aa3.79□□□□□ -1.8
TRAV28-201ENST00000557548 MMS22LQ6ZRQ5 1243 aa3.79□□□□□ -1.8
TRAV28-201ENST00000557548 AMIGO3Q86WK7 504 aa3.79□□□□□ -1.8
TRAV28-201ENST00000557548 LILRA2Q8N149 483 aa3.79□□□□□ -1.8
TRAV28-201ENST00000557548 FAM26EQ8N5C1 309 aa3.79□□□□□ -1.8
TRAV28-201ENST00000557548 CELF5Q8N6W0 485 aaKnown RBP3.79□□□□□ -1.8
TRAV28-201ENST00000557548 GPR156Q8NFN8 814 aa3.79□□□□□ -1.8
TRAV28-201ENST00000557548 DDX55Q8NHQ9 600 aaKnown RBP eCLIP3.79□□□□□ -1.8
TRAV28-201ENST00000557548 ZSCAN18Q8TBC5 510 aaPredicted RBP3.79□□□□□ -1.8
TRAV28-201ENST00000557548 HOXB13Q92826 284 aaPredicted RBP3.79□□□□□ -1.8
TRAV28-201ENST00000557548 TRIM63Q969Q1 353 aa3.79□□□□□ -1.8
TRAV28-201ENST00000557548 DDX11Q96FC9 970 aa3.79□□□□□ -1.8
TRAV28-201ENST00000557548 DYDC2Q96IM9 177 aa3.79□□□□□ -1.8
TRAV28-201ENST00000557548 TOX2Q96NM4 488 aa3.79□□□□□ -1.8
TRAV28-201ENST00000557548 DMRTA2Q96SC8 542 aa3.79□□□□□ -1.8
TRAV28-201ENST00000557548 VRK1Q99986 396 aaPredicted RBP3.79□□□□□ -1.8
TRAV28-201ENST00000557548 SOX7Q9BT81 388 aa3.79□□□□□ -1.8
TRAV28-201ENST00000557548 UNKQ9C0B0 810 aaKnown RBP3.79□□□□□ -1.8
TRAV28-201ENST00000557548 HAPLN2Q9GZV7 340 aa3.79□□□□□ -1.8
TRAV28-201ENST00000557548 TMX4Q9H1E5 349 aaPredicted RBP3.79□□□□□ -1.8
TRAV28-201ENST00000557548 AGO4Q9HCK5 861 aaKnown RBP3.79□□□□□ -1.8
TRAV28-201ENST00000557548 PNPOQ9NVS9 261 aa3.79□□□□□ -1.8
TRAV28-201ENST00000557548 HSPBP1Q9NZL4 362 aa3.79□□□□□ -1.8
TRAV28-201ENST00000557548 ZNF69Q9UC07 566 aa3.79□□□□□ -1.8
TRAV28-201ENST00000557548 DNAI1Q9UI46 699 aa3.79□□□□□ -1.8
TRAV28-201ENST00000557548 MAGED2Q9UNF1 606 aaPredicted RBP3.79□□□□□ -1.8
TRAV28-201ENST00000557548 GPR52Q9Y2T5 361 aa3.79□□□□□ -1.8
TRAV28-201ENST00000557548 MYO1FO00160 1098 aa3.78□□□□□ -1.8
TRAV28-201ENST00000557548 APOL1O14791 398 aa3.78□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms