RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 MIA3Q5JRA6 1907 aa13.92□□□□□ -0.18
SHMT2-230ENST00000557427 ZFYVE26Q68DK2 2539 aa13.92□□□□□ -0.18
SHMT2-230ENST00000557427 ZZEF1O43149 2961 aa13.92□□□□□ -0.18
SHMT2-230ENST00000557427 CHMP2AO43633 222 aa13.92□□□□□ -0.18
SHMT2-230ENST00000557427 MYBP10242 640 aa13.92□□□□□ -0.18
SHMT2-230ENST00000557427 LAMP2P13473 410 aa13.92□□□□□ -0.18
SHMT2-230ENST00000557427 GPC5P78333 572 aa13.92□□□□□ -0.18
SHMT2-230ENST00000557427 SPEM2Q0P670 501 aa13.92□□□□□ -0.18
SHMT2-230ENST00000557427 SNW1Q13573 536 aaKnown RBP13.92□□□□□ -0.18
SHMT2-230ENST00000557427 HTR4Q13639 388 aa13.92□□□□□ -0.18
SHMT2-230ENST00000557427 NPY5RQ15761 445 aa13.92□□□□□ -0.18
SHMT2-230ENST00000557427 CCDC60Q8IWA6 550 aaPredicted RBP13.92□□□□□ -0.18
SHMT2-230ENST00000557427 OXER1Q8TDS5 423 aa13.92□□□□□ -0.18
SHMT2-230ENST00000557427 BBXQ8WY36 941 aaPredicted RBP13.92□□□□□ -0.18
SHMT2-230ENST00000557427 WASF1Q92558 559 aa13.92□□□□□ -0.18
SHMT2-230ENST00000557427 SECISBP2LQ93073 1101 aaKnown RBP13.92□□□□□ -0.18
SHMT2-230ENST00000557427 LENG9Q96B70 501 aa13.92□□□□□ -0.18
SHMT2-230ENST00000557427 PHF20Q9BVI0 1012 aa13.92□□□□□ -0.18
SHMT2-230ENST00000557427 RBSNQ9H1K0 784 aa13.92□□□□□ -0.18
SHMT2-230ENST00000557427 ADAMTS10Q9H324 1103 aa13.92□□□□□ -0.18
SHMT2-230ENST00000557427 MAN1C1Q9NR34 630 aa13.92□□□□□ -0.18
SHMT2-230ENST00000557427 DNAJB4Q9UDY4 337 aa13.92□□□□□ -0.18
SHMT2-230ENST00000557427 PCDHA10Q9Y5I2 948 aa13.92□□□□□ -0.18
SHMT2-230ENST00000557427 NUMBLQ9Y6R0 609 aa13.92□□□□□ -0.18
SHMT2-230ENST00000557427 ANKRD11Q6UB99 2663 aaPredicted RBP13.92□□□□□ -0.18
SHMT2-230ENST00000557427 CCDC194A0A1B0GVG4 234 aa13.91□□□□□ -0.18
SHMT2-230ENST00000557427 KANSL1LA0AUZ9 987 aa13.91□□□□□ -0.18
SHMT2-230ENST00000557427 GOLGA6L4A6NEF3 574 aa13.91□□□□□ -0.18
SHMT2-230ENST00000557427 M0R2N6 131 aa13.91□□□□□ -0.18
SHMT2-230ENST00000557427 GAS7O60861 476 aa13.91□□□□□ -0.18
SHMT2-230ENST00000557427 RFPL2O75678 378 aa13.91□□□□□ -0.18
SHMT2-230ENST00000557427 TDP2O95551 362 aa13.91□□□□□ -0.18
SHMT2-230ENST00000557427 SSBP05455 408 aaKnown RBP eCLIP13.91□□□□□ -0.18
SHMT2-230ENST00000557427 PSAPP07602 524 aa13.91□□□□□ -0.18
SHMT2-230ENST00000557427 ZSCAN20P17040 1043 aaPredicted RBP13.91□□□□□ -0.18
SHMT2-230ENST00000557427 FGFR4P22455 802 aa13.91□□□□□ -0.18
SHMT2-230ENST00000557427 PMLP29590 882 aa13.91□□□□□ -0.18
SHMT2-230ENST00000557427 SLC26A2P50443 739 aa13.91□□□□□ -0.18
SHMT2-230ENST00000557427 ZNF484Q5JVG2 852 aa13.91□□□□□ -0.18
SHMT2-230ENST00000557427 ZNF746Q6NUN9 644 aaPredicted RBP13.91□□□□□ -0.18
SHMT2-230ENST00000557427 KRT25Q7Z3Z0 450 aa13.91□□□□□ -0.18
SHMT2-230ENST00000557427 DAGLBQ8NCG7 672 aa13.91□□□□□ -0.18
SHMT2-230ENST00000557427 ZNF707Q96C28 371 aaPredicted RBP13.91□□□□□ -0.18
SHMT2-230ENST00000557427 ZNF668Q96K58 619 aaPredicted RBP13.91□□□□□ -0.18
SHMT2-230ENST00000557427 MRPL9Q9BYD2 267 aaKnown RBP13.91□□□□□ -0.18
SHMT2-230ENST00000557427 BCO2Q9BYV7 579 aa13.91□□□□□ -0.18
SHMT2-230ENST00000557427 RHOBTB2Q9BYZ6 727 aa13.91□□□□□ -0.18
SHMT2-230ENST00000557427 GABBR1Q9UBS5 961 aa13.91□□□□□ -0.18
SHMT2-230ENST00000557427 COL1A2P08123 1366 aa13.91□□□□□ -0.18
SHMT2-230ENST00000557427 LOC105378220A0A1B0GUY1 285 aaPredicted RBP13.9□□□□□ -0.18
SHMT2-230ENST00000557427 MEIS3P2A8K0S8 358 aa13.9□□□□□ -0.18
SHMT2-230ENST00000557427 INPPL1O15357 1258 aa13.9□□□□□ -0.18
SHMT2-230ENST00000557427 TBC1D4O60343 1298 aa13.9□□□□□ -0.18
SHMT2-230ENST00000557427 SLC11A1P49279 550 aa13.9□□□□□ -0.18
SHMT2-230ENST00000557427 CLCN3P51790 818 aa13.9□□□□□ -0.18
SHMT2-230ENST00000557427 NLRP11P59045 1033 aaKnown RBP13.9□□□□□ -0.18
SHMT2-230ENST00000557427 GUCY1B3Q02153 619 aa13.9□□□□□ -0.18
SHMT2-230ENST00000557427 Q4G0T1 1027 aa13.9□□□□□ -0.18
SHMT2-230ENST00000557427 LRCH2Q5VUJ6 765 aa13.9□□□□□ -0.18
SHMT2-230ENST00000557427 PIK3AP1Q6ZUJ8 805 aa13.9□□□□□ -0.18
SHMT2-230ENST00000557427 NETO1Q8TDF5 533 aa13.9□□□□□ -0.18
SHMT2-230ENST00000557427 STAMQ92783 540 aa13.9□□□□□ -0.18
SHMT2-230ENST00000557427 SLC5A5Q92911 643 aa13.9□□□□□ -0.18
SHMT2-230ENST00000557427 COL26A1Q96A83 441 aa13.9□□□□□ -0.18
SHMT2-230ENST00000557427 EMILIN2Q9BXX0 1053 aa13.9□□□□□ -0.18
SHMT2-230ENST00000557427 DISC1Q9NRI5 854 aa13.9□□□□□ -0.18
SHMT2-230ENST00000557427 DDX19AQ9NUU7 478 aaKnown RBP13.9□□□□□ -0.18
SHMT2-230ENST00000557427 TBC1D13Q9NVG8 400 aa13.9□□□□□ -0.18
SHMT2-230ENST00000557427 ANGPTL2Q9UKU9 493 aa13.9□□□□□ -0.18
SHMT2-230ENST00000557427 CYP3A7-CYP3A51PA0A087WV96 503 aa13.89□□□□□ -0.19
SHMT2-230ENST00000557427 FAM170BA6NMN3 283 aa13.89□□□□□ -0.19
SHMT2-230ENST00000557427 GDF9O60383 454 aa13.89□□□□□ -0.19
SHMT2-230ENST00000557427 PAPLNO95428 1278 aa13.89□□□□□ -0.19
SHMT2-230ENST00000557427 CD72P21854 359 aa13.89□□□□□ -0.19
SHMT2-230ENST00000557427 EIF4BP23588 611 aaKnown RBP13.89□□□□□ -0.19
SHMT2-230ENST00000557427 CYP3A7P24462 503 aa13.89□□□□□ -0.19
SHMT2-230ENST00000557427 CCDC173Q0VFZ6 552 aa13.89□□□□□ -0.19
SHMT2-230ENST00000557427 LPAL2Q16609 132 aa13.89□□□□□ -0.19
SHMT2-230ENST00000557427 LONRF3Q496Y0 759 aa13.89□□□□□ -0.19
SHMT2-230ENST00000557427 ZNF280BQ86YH2 543 aa13.89□□□□□ -0.19
SHMT2-230ENST00000557427 SMAP1Q8IYB5 467 aaPredicted RBP13.89□□□□□ -0.19
SHMT2-230ENST00000557427 FAM177A1Q8N128 213 aaPredicted RBP13.89□□□□□ -0.19
SHMT2-230ENST00000557427 METTL13Q8N6R0 699 aa13.89□□□□□ -0.19
SHMT2-230ENST00000557427 LINC01465Q8N7H1 131 aa13.89□□□□□ -0.19
SHMT2-230ENST00000557427 ANP32BQ92688 251 aaKnown RBP13.89□□□□□ -0.19
SHMT2-230ENST00000557427 FGF14Q92915 247 aa13.89□□□□□ -0.19
SHMT2-230ENST00000557427 LPPQ93052 612 aa13.89□□□□□ -0.19
SHMT2-230ENST00000557427 SHDQ96IW2 340 aa13.89□□□□□ -0.19
SHMT2-230ENST00000557427 USP28Q96RU2 1077 aa13.89□□□□□ -0.19
SHMT2-230ENST00000557427 PPP1R9BQ96SB3 815 aa13.89□□□□□ -0.19
SHMT2-230ENST00000557427 RIT2Q99578 217 aa13.89□□□□□ -0.19
SHMT2-230ENST00000557427 TEKT3Q9BXF9 490 aa13.89□□□□□ -0.19
SHMT2-230ENST00000557427 UNC45AQ9H3U1 944 aa13.89□□□□□ -0.19
SHMT2-230ENST00000557427 DDX25Q9UHL0 483 aaKnown RBP13.89□□□□□ -0.19
SHMT2-230ENST00000557427 MAFBQ9Y5Q3 323 aaPredicted RBP13.89□□□□□ -0.19
SHMT2-230ENST00000557427 CNOT1A5YKK6 2376 aaKnown RBP13.88□□□□□ -0.19
SHMT2-230ENST00000557427 WDR64B1ANS9 1081 aa13.88□□□□□ -0.19
SHMT2-230ENST00000557427 MARCH6O60337 910 aa13.88□□□□□ -0.19
SHMT2-230ENST00000557427 CCNT1O60563 726 aaKnown RBP13.88□□□□□ -0.19
SHMT2-230ENST00000557427 YEATS4O95619 227 aa13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms