RNA–Protein interactions for RNA: ENST00000556973.1

LINC00239-201, long intergenic non-protein coding RNA 239, humanhuman

TSL 3 BASIC

Gene LINC00239, Length 639 nt, Biotype lincRNA, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00239-201ENST00000556973 GAP43P17677 238 aa11.73□□□□□ -0.53
LINC00239-201ENST00000556973 AKAP5P24588 427 aa11.73□□□□□ -0.53
LINC00239-201ENST00000556973 PPM1AP35813 382 aa11.73□□□□□ -0.53
LINC00239-201ENST00000556973 BCAR1P56945 870 aa11.73□□□□□ -0.53
LINC00239-201ENST00000556973 GTF2BQ00403 316 aa11.73□□□□□ -0.53
LINC00239-201ENST00000556973 EEF1DP3Q658K8 133 aa11.73□□□□□ -0.53
LINC00239-201ENST00000556973 FAM178BQ8IXR5 827 aa11.73□□□□□ -0.53
LINC00239-201ENST00000556973 MICALL1Q8N3F8 863 aa11.73□□□□□ -0.53
LINC00239-201ENST00000556973 POF1BQ8WVV4 589 aa11.73□□□□□ -0.53
LINC00239-201ENST00000556973 GAD1Q99259 594 aa11.73□□□□□ -0.53
LINC00239-201ENST00000556973 TCHPQ9BT92 498 aa11.73□□□□□ -0.53
LINC00239-201ENST00000556973 TARS2Q9BW92 718 aaKnown RBP11.73□□□□□ -0.53
LINC00239-201ENST00000556973 NXF3Q9H4D5 531 aaKnown RBP11.73□□□□□ -0.53
LINC00239-201ENST00000556973 ST6GALNAC4Q9H4F1 302 aa11.73□□□□□ -0.53
LINC00239-201ENST00000556973 MAGEF1Q9HAY2 307 aa11.73□□□□□ -0.53
LINC00239-201ENST00000556973 MIOSQ9NXC5 875 aa11.73□□□□□ -0.53
LINC00239-201ENST00000556973 SPG21Q9NZD8 308 aa11.73□□□□□ -0.53
LINC00239-201ENST00000556973 HCSTQ9UBK5 93 aa11.73□□□□□ -0.53
LINC00239-201ENST00000556973 ZMYM2Q9UBW7 1377 aa11.73□□□□□ -0.53
LINC00239-201ENST00000556973 PARP2Q9UGN5 583 aa11.73□□□□□ -0.53
LINC00239-201ENST00000556973 KCNH3Q9ULD8 1083 aa11.73□□□□□ -0.53
LINC00239-201ENST00000556973 TBX20Q9UMR3 447 aa11.73□□□□□ -0.53
LINC00239-201ENST00000556973 LZTS1Q9Y250 596 aa11.73□□□□□ -0.53
LINC00239-201ENST00000556973 K7ENM7 598 aa11.72□□□□□ -0.53
LINC00239-201ENST00000556973 TOM1L1O75674 476 aa11.72□□□□□ -0.53
LINC00239-201ENST00000556973 DDHD2O94830 711 aa11.72□□□□□ -0.53
LINC00239-201ENST00000556973 GALTP07902 379 aa11.72□□□□□ -0.53
LINC00239-201ENST00000556973 MCF2P10911 925 aa11.72□□□□□ -0.53
LINC00239-201ENST00000556973 PROZP22891 400 aa11.72□□□□□ -0.53
LINC00239-201ENST00000556973 DNAJB1P25685 340 aa11.72□□□□□ -0.53
LINC00239-201ENST00000556973 ANP32AP39687 249 aaKnown RBP11.72□□□□□ -0.53
LINC00239-201ENST00000556973 MLH1P40692 756 aa11.72□□□□□ -0.53
LINC00239-201ENST00000556973 AFF1P51825 1210 aaKnown RBP11.72□□□□□ -0.53
LINC00239-201ENST00000556973 HERC4Q5GLZ8 1057 aaPredicted RBP11.72□□□□□ -0.53
LINC00239-201ENST00000556973 PDE12Q6L8Q7 609 aaKnown RBP11.72□□□□□ -0.53
LINC00239-201ENST00000556973 MPZL3Q6UWV2 235 aa11.72□□□□□ -0.53
LINC00239-201ENST00000556973 ZNF720Q7Z2F6 126 aa11.72□□□□□ -0.53
LINC00239-201ENST00000556973 ZNF280BQ86YH2 543 aa11.72□□□□□ -0.53
LINC00239-201ENST00000556973 GSTCDQ8NEC7 633 aa11.72□□□□□ -0.53
LINC00239-201ENST00000556973 MRPS27Q92552 414 aaKnown RBP11.72□□□□□ -0.53
LINC00239-201ENST00000556973 CHAMP1Q96JM3 812 aa11.72□□□□□ -0.53
LINC00239-201ENST00000556973 FIZ1Q96SL8 496 aa11.72□□□□□ -0.53
LINC00239-201ENST00000556973 TMEM175Q9BSA9 504 aa11.72□□□□□ -0.53
LINC00239-201ENST00000556973 PANK4Q9NVE7 773 aa11.72□□□□□ -0.53
LINC00239-201ENST00000556973 SNTG2Q9NY99 539 aa11.72□□□□□ -0.53
LINC00239-201ENST00000556973 USP25Q9UHP3 1055 aa11.72□□□□□ -0.53
LINC00239-201ENST00000556973 MYO9BQ13459 2157 aa11.72□□□□□ -0.53
LINC00239-201ENST00000556973 ATG2AQ2TAZ0 1938 aa11.71□□□□□ -0.53
LINC00239-201ENST00000556973 FRMD3A2A2Y4 597 aa11.71□□□□□ -0.53
LINC00239-201ENST00000556973 CLDN3O15551 220 aa11.71□□□□□ -0.53
LINC00239-201ENST00000556973 ZC3H11AO75152 810 aaKnown RBP eCLIP11.71□□□□□ -0.53
LINC00239-201ENST00000556973 NR1I2O75469 434 aa11.71□□□□□ -0.53
LINC00239-201ENST00000556973 IDEP14735 1019 aa11.71□□□□□ -0.53
LINC00239-201ENST00000556973 NMT1P30419 496 aaKnown RBP11.71□□□□□ -0.53
LINC00239-201ENST00000556973 GRM5P41594 1212 aa11.71□□□□□ -0.53
LINC00239-201ENST00000556973 CAMK1Q14012 370 aa11.71□□□□□ -0.53
LINC00239-201ENST00000556973 ZNF568Q3ZCX4 644 aa11.71□□□□□ -0.53
LINC00239-201ENST00000556973 TIGD5Q53EQ6 642 aa11.71□□□□□ -0.53
LINC00239-201ENST00000556973 CNNM4Q6P4Q7 775 aa11.71□□□□□ -0.53
LINC00239-201ENST00000556973 ZBTB33Q86T24 672 aa11.71□□□□□ -0.53
LINC00239-201ENST00000556973 SFR1Q86XK3 245 aa11.71□□□□□ -0.53
LINC00239-201ENST00000556973 CCDC65Q8IXS2 484 aa11.71□□□□□ -0.53
LINC00239-201ENST00000556973 CEP57L1Q8IYX8 460 aa11.71□□□□□ -0.53
LINC00239-201ENST00000556973 SLC39A11Q8N1S5 342 aa11.71□□□□□ -0.53
LINC00239-201ENST00000556973 STAMQ92783 540 aa11.71□□□□□ -0.53
LINC00239-201ENST00000556973 BICD1Q96G01 975 aa11.71□□□□□ -0.53
LINC00239-201ENST00000556973 ZFP42Q96MM3 310 aa11.71□□□□□ -0.53
LINC00239-201ENST00000556973 RPS6KC1Q96S38 1066 aa11.71□□□□□ -0.53
LINC00239-201ENST00000556973 C7orf25Q9BPX7 421 aa11.71□□□□□ -0.53
LINC00239-201ENST00000556973 CCDC94Q9BW85 323 aaPredicted RBP11.71□□□□□ -0.53
LINC00239-201ENST00000556973 GBP3Q9H0R5 595 aa11.71□□□□□ -0.53
LINC00239-201ENST00000556973 CDT1Q9H211 546 aa11.71□□□□□ -0.53
LINC00239-201ENST00000556973 NSUN3Q9H649 340 aaKnown RBP11.71□□□□□ -0.53
LINC00239-201ENST00000556973 MRPL44Q9H9J2 332 aaKnown RBP11.71□□□□□ -0.53
LINC00239-201ENST00000556973 OLFML3Q9NRN5 406 aa11.71□□□□□ -0.53
LINC00239-201ENST00000556973 KLK14Q9P0G3 267 aa11.71□□□□□ -0.53
LINC00239-201ENST00000556973 DNAJB4Q9UDY4 337 aa11.71□□□□□ -0.53
LINC00239-201ENST00000556973 STK39Q9UEW8 545 aa11.71□□□□□ -0.53
LINC00239-201ENST00000556973 CIZ1Q9ULV3 898 aaPredicted RBP11.71□□□□□ -0.53
LINC00239-201ENST00000556973 FAN1Q9Y2M0 1017 aa11.71□□□□□ -0.53
LINC00239-201ENST00000556973 CHD7Q9P2D1 2997 aa11.7□□□□□ -0.54
LINC00239-201ENST00000556973 FAM237AA0A1B0GTK4 181 aa11.7□□□□□ -0.54
LINC00239-201ENST00000556973 A0A1B0GVL5 298 aa11.7□□□□□ -0.54
LINC00239-201ENST00000556973 A0A1W2PQ27 194 aa11.7□□□□□ -0.54
LINC00239-201ENST00000556973 A0A1W2PQ64 194 aa11.7□□□□□ -0.54
LINC00239-201ENST00000556973 A0A1W2PQD8 194 aa11.7□□□□□ -0.54
LINC00239-201ENST00000556973 NT5C1B-RDH14C9J2C7 533 aa11.7□□□□□ -0.54
LINC00239-201ENST00000556973 ABLIM1O14639 778 aa11.7□□□□□ -0.54
LINC00239-201ENST00000556973 NRP1O14786 923 aa11.7□□□□□ -0.54
LINC00239-201ENST00000556973 RECQL4O94761 1208 aa11.7□□□□□ -0.54
LINC00239-201ENST00000556973 PIGRP01833 764 aa11.7□□□□□ -0.54
LINC00239-201ENST00000556973 THP07101 528 aa11.7□□□□□ -0.54
LINC00239-201ENST00000556973 SLFN14P0C7P3 912 aa11.7□□□□□ -0.54
LINC00239-201ENST00000556973 PFKFB1P16118 471 aa11.7□□□□□ -0.54
LINC00239-201ENST00000556973 PBX3P40426 434 aa11.7□□□□□ -0.54
LINC00239-201ENST00000556973 MATR3P43243 847 aaKnown RBP eCLIP11.7□□□□□ -0.54
LINC00239-201ENST00000556973 LIG4P49917 911 aa11.7□□□□□ -0.54
LINC00239-201ENST00000556973 SCNN1GP51170 649 aa11.7□□□□□ -0.54
LINC00239-201ENST00000556973 YARSP54577 528 aaKnown RBP11.7□□□□□ -0.54
LINC00239-201ENST00000556973 MCL1Q07820 350 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms