RNA–Protein interactions for RNA: ENST00000556767.1

CCDC88C-212, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 676 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-212ENST00000556767 ZPBP2Q6X784 338 aa12.55□□□□□ -0.4
CCDC88C-212ENST00000556767 STXBP4Q6ZWJ1 553 aa12.55□□□□□ -0.4
CCDC88C-212ENST00000556767 UNC13DQ70J99 1090 aa12.55□□□□□ -0.4
CCDC88C-212ENST00000556767 THNSL1Q8IYQ7 743 aa12.55□□□□□ -0.4
CCDC88C-212ENST00000556767 SYCP3Q8IZU3 236 aa12.55□□□□□ -0.4
CCDC88C-212ENST00000556767 FBXO22Q8NEZ5 403 aa12.55□□□□□ -0.4
CCDC88C-212ENST00000556767 MYLIPQ8WY64 445 aa12.55□□□□□ -0.4
CCDC88C-212ENST00000556767 HPS3Q969F9 1004 aa12.55□□□□□ -0.4
CCDC88C-212ENST00000556767 CCDC47Q96A33 483 aaKnown RBP12.55□□□□□ -0.4
CCDC88C-212ENST00000556767 ZBTB45Q96K62 511 aaPredicted RBP12.55□□□□□ -0.4
CCDC88C-212ENST00000556767 SAMD11Q96NU1 681 aa12.55□□□□□ -0.4
CCDC88C-212ENST00000556767 FAM193BQ96PV7 902 aaPredicted RBP12.55□□□□□ -0.4
CCDC88C-212ENST00000556767 RPS6KC1Q96S38 1066 aa12.55□□□□□ -0.4
CCDC88C-212ENST00000556767 FIZ1Q96SL8 496 aa12.55□□□□□ -0.4
CCDC88C-212ENST00000556767 GAS2L1Q99501 681 aaPredicted RBP12.55□□□□□ -0.4
CCDC88C-212ENST00000556767 CDX2Q99626 313 aaPredicted RBP12.55□□□□□ -0.4
CCDC88C-212ENST00000556767 GBP3Q9H0R5 595 aa12.55□□□□□ -0.4
CCDC88C-212ENST00000556767 CDT1Q9H211 546 aa12.55□□□□□ -0.4
CCDC88C-212ENST00000556767 AAASQ9NRG9 546 aa12.55□□□□□ -0.4
CCDC88C-212ENST00000556767 OLFML3Q9NRN5 406 aa12.55□□□□□ -0.4
CCDC88C-212ENST00000556767 MTMR10Q9NXD2 777 aa12.55□□□□□ -0.4
CCDC88C-212ENST00000556767 SNTG2Q9NY99 539 aa12.55□□□□□ -0.4
CCDC88C-212ENST00000556767 HCSTQ9UBK5 93 aa12.55□□□□□ -0.4
CCDC88C-212ENST00000556767 EXOC7Q9UPT5 735 aa12.55□□□□□ -0.4
CCDC88C-212ENST00000556767 PCDHB13Q9Y5F0 798 aa12.55□□□□□ -0.4
CCDC88C-212ENST00000556767 FNDC1Q4ZHG4 1894 aaPredicted RBP12.55□□□□□ -0.4
CCDC88C-212ENST00000556767 PVALEFA0A1B0GWK0 134 aa12.54□□□□□ -0.4
CCDC88C-212ENST00000556767 CLDN3O15551 220 aa12.54□□□□□ -0.4
CCDC88C-212ENST00000556767 PRPF40AO75400 957 aaKnown RBP12.54□□□□□ -0.4
CCDC88C-212ENST00000556767 PRPF6O94906 941 aaKnown RBP12.54□□□□□ -0.4
CCDC88C-212ENST00000556767 POMCP01189 267 aa12.54□□□□□ -0.4
CCDC88C-212ENST00000556767 MCF2P10911 925 aa12.54□□□□□ -0.4
CCDC88C-212ENST00000556767 IGFBP4P22692 258 aa12.54□□□□□ -0.4
CCDC88C-212ENST00000556767 BMPR1AP36894 532 aa12.54□□□□□ -0.4
CCDC88C-212ENST00000556767 CASP5P51878 434 aa12.54□□□□□ -0.4
CCDC88C-212ENST00000556767 YARSP54577 528 aaKnown RBP12.54□□□□□ -0.4
CCDC88C-212ENST00000556767 FAM160A1Q05DH4 1040 aa12.54□□□□□ -0.4
CCDC88C-212ENST00000556767 ALCAMQ13740 583 aa12.54□□□□□ -0.4
CCDC88C-212ENST00000556767 FAM26FQ5R3K3 315 aa12.54□□□□□ -0.4
CCDC88C-212ENST00000556767 KANK3Q6NY19 840 aa12.54□□□□□ -0.4
CCDC88C-212ENST00000556767 CNNM4Q6P4Q7 775 aa12.54□□□□□ -0.4
CCDC88C-212ENST00000556767 HVCN1Q96D96 273 aa12.54□□□□□ -0.4
CCDC88C-212ENST00000556767 ACCSQ96QU6 501 aa12.54□□□□□ -0.4
CCDC88C-212ENST00000556767 CCDC94Q9BW85 323 aaPredicted RBP12.54□□□□□ -0.4
CCDC88C-212ENST00000556767 FGFBP2Q9BYJ0 223 aa12.54□□□□□ -0.4
CCDC88C-212ENST00000556767 ST6GALNAC4Q9H4F1 302 aa12.54□□□□□ -0.4
CCDC88C-212ENST00000556767 PTPRHQ9HD43 1115 aa12.54□□□□□ -0.4
CCDC88C-212ENST00000556767 EXOC1Q9NV70 894 aa12.54□□□□□ -0.4
CCDC88C-212ENST00000556767 TBC1D13Q9NVG8 400 aa12.54□□□□□ -0.4
CCDC88C-212ENST00000556767 GIT1Q9Y2X7 761 aa12.54□□□□□ -0.4
CCDC88C-212ENST00000556767 PCDHB12Q9Y5F1 795 aa12.54□□□□□ -0.4
CCDC88C-212ENST00000556767 COL4A6Q14031 1691 aa12.54□□□□□ -0.4
CCDC88C-212ENST00000556767 ARL5CA6NH57 179 aa12.53□□□□□ -0.4
CCDC88C-212ENST00000556767 EPOPA6NHQ4 379 aa12.53□□□□□ -0.4
CCDC88C-212ENST00000556767 TULP1O00294 542 aaPredicted RBP12.53□□□□□ -0.4
CCDC88C-212ENST00000556767 KINO60870 393 aaKnown RBP12.53□□□□□ -0.4
CCDC88C-212ENST00000556767 ZC3H11AO75152 810 aaKnown RBP eCLIP12.53□□□□□ -0.4
CCDC88C-212ENST00000556767 RECQL4O94761 1208 aa12.53□□□□□ -0.4
CCDC88C-212ENST00000556767 CSPG5O95196 566 aa12.53□□□□□ -0.4
CCDC88C-212ENST00000556767 MYL1P05976 194 aa12.53□□□□□ -0.4
CCDC88C-212ENST00000556767 PRR29P0C7W0 189 aa12.53□□□□□ -0.4
CCDC88C-212ENST00000556767 FOSL2P15408 326 aa12.53□□□□□ -0.4
CCDC88C-212ENST00000556767 LAG3P18627 525 aa12.53□□□□□ -0.4
CCDC88C-212ENST00000556767 SCNN1GP51170 649 aa12.53□□□□□ -0.4
CCDC88C-212ENST00000556767 GPM6BQ13491 265 aa12.53□□□□□ -0.4
CCDC88C-212ENST00000556767 NOLC1Q14978 699 aaKnown RBP eCLIP12.53□□□□□ -0.4
CCDC88C-212ENST00000556767 SEZ6Q53EL9 994 aa12.53□□□□□ -0.4
CCDC88C-212ENST00000556767 L1TD1Q5T7N2 865 aaKnown RBP12.53□□□□□ -0.4
CCDC88C-212ENST00000556767 LRRC55Q6ZSA7 311 aa12.53□□□□□ -0.4
CCDC88C-212ENST00000556767 MAP4K3Q8IVH8 894 aa12.53□□□□□ -0.4
CCDC88C-212ENST00000556767 FMR1NBQ8N0W7 255 aaPredicted RBP12.53□□□□□ -0.4
CCDC88C-212ENST00000556767 CEP120Q8N960 986 aa12.53□□□□□ -0.4
CCDC88C-212ENST00000556767 TMEM87AQ8NBN3 555 aa12.53□□□□□ -0.4
CCDC88C-212ENST00000556767 GDPD5Q8WTR4 605 aa12.53□□□□□ -0.4
CCDC88C-212ENST00000556767 RSPH1Q8WYR4 309 aa12.53□□□□□ -0.4
CCDC88C-212ENST00000556767 ZFP42Q96MM3 310 aa12.53□□□□□ -0.4
CCDC88C-212ENST00000556767 ZNF558Q96NG5 402 aa12.53□□□□□ -0.4
CCDC88C-212ENST00000556767 GUCD1Q96NT3 240 aa12.53□□□□□ -0.4
CCDC88C-212ENST00000556767 C11orf84Q9BUA3 381 aaPredicted RBP12.53□□□□□ -0.4
CCDC88C-212ENST00000556767 SLC39A2Q9NP94 309 aa12.53□□□□□ -0.4
CCDC88C-212ENST00000556767 KANSL3Q9P2N6 904 aa12.53□□□□□ -0.4
CCDC88C-212ENST00000556767 NLRC5Q86WI3 1866 aa12.53□□□□□ -0.4
CCDC88C-212ENST00000556767 ANKRD63C9JTQ0 380 aa12.52□□□□□ -0.41
CCDC88C-212ENST00000556767 PPP1R37O75864 691 aa12.52□□□□□ -0.41
CCDC88C-212ENST00000556767 PIGRP01833 764 aa12.52□□□□□ -0.41
CCDC88C-212ENST00000556767 RPN1P04843 607 aaKnown RBP12.52□□□□□ -0.41
CCDC88C-212ENST00000556767 RB1P06400 928 aa12.52□□□□□ -0.41
CCDC88C-212ENST00000556767 PROZP22891 400 aa12.52□□□□□ -0.41
CCDC88C-212ENST00000556767 PBX3P40426 434 aa12.52□□□□□ -0.41
CCDC88C-212ENST00000556767 GRM5P41594 1212 aa12.52□□□□□ -0.41
CCDC88C-212ENST00000556767 ALDH7A1P49419 539 aaKnown RBP12.52□□□□□ -0.41
CCDC88C-212ENST00000556767 AFF1P51825 1210 aaKnown RBP12.52□□□□□ -0.41
CCDC88C-212ENST00000556767 UBE2HP62256 183 aa12.52□□□□□ -0.41
CCDC88C-212ENST00000556767 KCNA1Q09470 495 aa12.52□□□□□ -0.41
CCDC88C-212ENST00000556767 SNW1Q13573 536 aaKnown RBP12.52□□□□□ -0.41
CCDC88C-212ENST00000556767 POSTNQ15063 836 aa12.52□□□□□ -0.41
CCDC88C-212ENST00000556767 KMT5BQ4FZB7 885 aa12.52□□□□□ -0.41
CCDC88C-212ENST00000556767 SLFN12LQ6IEE8 588 aa12.52□□□□□ -0.41
CCDC88C-212ENST00000556767 KCNT2Q6UVM3 1135 aa12.52□□□□□ -0.41
CCDC88C-212ENST00000556767 COLGALT1Q8NBJ5 622 aa12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms