RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 WASP42768 502 aa6.14□□□□□ -1.43
SCFD1-221ENST00000556534 NOMO1Q15155 1222 aa6.14□□□□□ -1.43
SCFD1-221ENST00000556534 TMEM240Q5SV17 173 aa6.14□□□□□ -1.43
SCFD1-221ENST00000556534 C1QL3Q5VWW1 255 aa6.14□□□□□ -1.43
SCFD1-221ENST00000556534 APBB1IPQ7Z5R6 666 aaPredicted RBP6.14□□□□□ -1.43
SCFD1-221ENST00000556534 PPM1NQ8N819 430 aa6.14□□□□□ -1.43
SCFD1-221ENST00000556534 MDM1Q8TC05 714 aa6.14□□□□□ -1.43
SCFD1-221ENST00000556534 NRG4Q8WWG1 115 aa6.14□□□□□ -1.43
SCFD1-221ENST00000556534 CDC5LQ99459 802 aaKnown RBP6.14□□□□□ -1.43
SCFD1-221ENST00000556534 DNM3Q9UQ16 869 aa6.14□□□□□ -1.43
SCFD1-221ENST00000556534 SIK3Q9Y2K2 1263 aa6.14□□□□□ -1.43
SCFD1-221ENST00000556534 ZMYM3Q14202 1370 aa6.14□□□□□ -1.43
SCFD1-221ENST00000556534 FAM171A2A8MVW0 826 aa6.13□□□□□ -1.43
SCFD1-221ENST00000556534 ADRB1P08588 477 aa6.13□□□□□ -1.43
SCFD1-221ENST00000556534 GUCY1A2P33402 732 aa6.13□□□□□ -1.43
SCFD1-221ENST00000556534 SLC6A9P48067 706 aa6.13□□□□□ -1.43
SCFD1-221ENST00000556534 RABGGTBP53611 331 aa6.13□□□□□ -1.43
SCFD1-221ENST00000556534 APBA1Q02410 837 aa6.13□□□□□ -1.43
SCFD1-221ENST00000556534 HHEXQ03014 270 aa6.13□□□□□ -1.43
SCFD1-221ENST00000556534 PRKD1Q15139 912 aaPredicted RBP6.13□□□□□ -1.43
SCFD1-221ENST00000556534 Q6ZRM9 215 aa6.13□□□□□ -1.43
SCFD1-221ENST00000556534 DOK3Q7L591 496 aa6.13□□□□□ -1.43
SCFD1-221ENST00000556534 ZBTB46Q86UZ6 589 aa6.13□□□□□ -1.43
SCFD1-221ENST00000556534 ELOA2Q8IYF1 753 aaPredicted RBP6.13□□□□□ -1.43
SCFD1-221ENST00000556534 THEMISQ8N1K5 641 aaPredicted RBP6.13□□□□□ -1.43
SCFD1-221ENST00000556534 ANKRD35Q8N283 1001 aa6.13□□□□□ -1.43
SCFD1-221ENST00000556534 ABCF1Q8NE71 845 aaKnown RBP eCLIP6.13□□□□□ -1.43
SCFD1-221ENST00000556534 REPS2Q8NFH8 660 aa6.13□□□□□ -1.43
SCFD1-221ENST00000556534 MDGA1Q8NFP4 955 aa6.13□□□□□ -1.43
SCFD1-221ENST00000556534 MIEF2Q96C03 454 aa6.13□□□□□ -1.43
SCFD1-221ENST00000556534 CEP95Q96GE4 821 aa6.13□□□□□ -1.43
SCFD1-221ENST00000556534 CDK5RAP1Q96SZ6 601 aaKnown RBP6.13□□□□□ -1.43
SCFD1-221ENST00000556534 PDCD2LQ9BRP1 358 aa6.13□□□□□ -1.43
SCFD1-221ENST00000556534 LSM14BQ9BX40 385 aaKnown RBP6.13□□□□□ -1.43
SCFD1-221ENST00000556534 CPEB1Q9BZB8 566 aaKnown RBP6.13□□□□□ -1.43
SCFD1-221ENST00000556534 SERPINB13Q9UIV8 391 aa6.13□□□□□ -1.43
SCFD1-221ENST00000556534 TESMINQ9Y4I5 508 aa6.13□□□□□ -1.43
SCFD1-221ENST00000556534 C1QTNF3-AMACRE9PGA6 284 aa6.12□□□□□ -1.43
SCFD1-221ENST00000556534 ALDH1L1O75891 902 aa6.12□□□□□ -1.43
SCFD1-221ENST00000556534 IPO13O94829 963 aaKnown RBP6.12□□□□□ -1.43
SCFD1-221ENST00000556534 ENDOD1O94919 500 aa6.12□□□□□ -1.43
SCFD1-221ENST00000556534 GSPT1P15170 499 aaKnown RBP6.12□□□□□ -1.43
SCFD1-221ENST00000556534 ACRV1P26436 265 aa6.12□□□□□ -1.43
SCFD1-221ENST00000556534 RECQLP46063 649 aaPredicted RBP6.12□□□□□ -1.43
SCFD1-221ENST00000556534 TTF1Q15361 905 aaPredicted RBP6.12□□□□□ -1.43
SCFD1-221ENST00000556534 PLEKHG6Q3KR16 790 aa6.12□□□□□ -1.43
SCFD1-221ENST00000556534 SPDYAQ5MJ70 313 aa6.12□□□□□ -1.43
SCFD1-221ENST00000556534 MFSD14BQ5SR56 506 aa6.12□□□□□ -1.43
SCFD1-221ENST00000556534 EFCAB2Q5VUJ9 269 aa6.12□□□□□ -1.43
SCFD1-221ENST00000556534 ATRNL1Q5VV63 1379 aa6.12□□□□□ -1.43
SCFD1-221ENST00000556534 FAM180AQ6UWF9 173 aa6.12□□□□□ -1.43
SCFD1-221ENST00000556534 HTR3DQ70Z44 454 aa6.12□□□□□ -1.43
SCFD1-221ENST00000556534 ZNF572Q7Z3I7 529 aaPredicted RBP6.12□□□□□ -1.43
SCFD1-221ENST00000556534 SGMS1Q86VZ5 419 aa6.12□□□□□ -1.43
SCFD1-221ENST00000556534 CMTR2Q8IYT2 770 aaKnown RBP6.12□□□□□ -1.43
SCFD1-221ENST00000556534 PQLC1Q8N2U9 271 aa6.12□□□□□ -1.43
SCFD1-221ENST00000556534 MB21D1Q8N884 522 aa6.12□□□□□ -1.43
SCFD1-221ENST00000556534 DDX55Q8NHQ9 600 aaKnown RBP eCLIP6.12□□□□□ -1.43
SCFD1-221ENST00000556534 ST8SIA2Q92186 375 aa6.12□□□□□ -1.43
SCFD1-221ENST00000556534 DPF2Q92785 391 aa6.12□□□□□ -1.43
SCFD1-221ENST00000556534 KCNH6Q9H252 994 aa6.12□□□□□ -1.43
SCFD1-221ENST00000556534 KRTAP23-1A1A580 65 aa6.11□□□□□ -1.43
SCFD1-221ENST00000556534 KLRG2A4D1S0 409 aaPredicted RBP6.11□□□□□ -1.43
SCFD1-221ENST00000556534 CYP27B1O15528 508 aa6.11□□□□□ -1.43
SCFD1-221ENST00000556534 ALOX15P16050 662 aaPredicted RBP6.11□□□□□ -1.43
SCFD1-221ENST00000556534 GNAT2P19087 354 aa6.11□□□□□ -1.43
SCFD1-221ENST00000556534 FLT3LGP49771 235 aa6.11□□□□□ -1.43
SCFD1-221ENST00000556534 SCNN1GP51170 649 aa6.11□□□□□ -1.43
SCFD1-221ENST00000556534 SLC16A1P53985 500 aa6.11□□□□□ -1.43
SCFD1-221ENST00000556534 ADKP55263 362 aaKnown RBP6.11□□□□□ -1.43
SCFD1-221ENST00000556534 KIF23Q02241 960 aaPredicted RBP6.11□□□□□ -1.43
SCFD1-221ENST00000556534 MCL1Q07820 350 aa6.11□□□□□ -1.43
SCFD1-221ENST00000556534 DCAF17Q5H9S7 520 aaPredicted RBP6.11□□□□□ -1.43
SCFD1-221ENST00000556534 PDZD4Q76G19 769 aaPredicted RBP6.11□□□□□ -1.43
SCFD1-221ENST00000556534 FBXO18Q8NFZ0 1043 aa6.11□□□□□ -1.43
SCFD1-221ENST00000556534 OR52N2Q8NGI0 321 aa6.11□□□□□ -1.43
SCFD1-221ENST00000556534 HOOK2Q96ED9 719 aa6.11□□□□□ -1.43
SCFD1-221ENST00000556534 CEP89Q96ST8 783 aa6.11□□□□□ -1.43
SCFD1-221ENST00000556534 LANCL2Q9NS86 450 aa6.11□□□□□ -1.43
SCFD1-221ENST00000556534 GIT1Q9Y2X7 761 aa6.11□□□□□ -1.43
SCFD1-221ENST00000556534 IPPQ9Y573 584 aa6.11□□□□□ -1.43
SCFD1-221ENST00000556534 B5MCH6 92 aa6.1□□□□□ -1.43
SCFD1-221ENST00000556534 HTRA2O43464 458 aaPredicted RBP6.1□□□□□ -1.43
SCFD1-221ENST00000556534 SNUPNO95149 360 aaKnown RBP6.1□□□□□ -1.43
SCFD1-221ENST00000556534 EDNRBP24530 442 aa6.1□□□□□ -1.43
SCFD1-221ENST00000556534 HIBADHP31937 336 aaKnown RBP6.1□□□□□ -1.43
SCFD1-221ENST00000556534 PTPN7P35236 360 aa6.1□□□□□ -1.43
SCFD1-221ENST00000556534 SP140Q13342 867 aa6.1□□□□□ -1.43
SCFD1-221ENST00000556534 CSRP2Q16527 193 aa6.1□□□□□ -1.43
SCFD1-221ENST00000556534 ANKS6Q68DC2 871 aa6.1□□□□□ -1.43
SCFD1-221ENST00000556534 GPRIN1Q7Z2K8 1008 aa6.1□□□□□ -1.43
SCFD1-221ENST00000556534 XYLT1Q86Y38 959 aa6.1□□□□□ -1.43
SCFD1-221ENST00000556534 ANKRD13AQ8IZ07 590 aa6.1□□□□□ -1.43
SCFD1-221ENST00000556534 CPA6Q8N4T0 437 aa6.1□□□□□ -1.43
SCFD1-221ENST00000556534 COA7Q96BR5 231 aa6.1□□□□□ -1.43
SCFD1-221ENST00000556534 UHRF1Q96T88 793 aaPredicted RBP6.1□□□□□ -1.43
SCFD1-221ENST00000556534 EPC1Q9H2F5 836 aa6.1□□□□□ -1.43
SCFD1-221ENST00000556534 LDAHQ9H6V9 325 aa6.1□□□□□ -1.43
SCFD1-221ENST00000556534 SAP30BPQ9UHR5 308 aaKnown RBP6.1□□□□□ -1.43
SCFD1-221ENST00000556534 INTUQ9ULD6 942 aa6.1□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms