RNA–Protein interactions for RNA: ENST00000555351.1

VRK1-204, Transcript of vaccinia related kinase 1, humanhuman

TSL 2

Gene VRK1, Length 667 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-204ENST00000555351 GAD1Q99259 594 aa13.06□□□□□ -0.32
VRK1-204ENST00000555351 NTPCRQ9BSD7 190 aaKnown RBP13.06□□□□□ -0.32
VRK1-204ENST00000555351 PHF7Q9BWX1 381 aaPredicted RBP13.06□□□□□ -0.32
VRK1-204ENST00000555351 EMILIN2Q9BXX0 1053 aa13.06□□□□□ -0.32
VRK1-204ENST00000555351 GBP3Q9H0R5 595 aa13.06□□□□□ -0.32
VRK1-204ENST00000555351 PDZD7Q9H5P4 517 aa13.06□□□□□ -0.32
VRK1-204ENST00000555351 EPHX3Q9H6B9 360 aa13.06□□□□□ -0.32
VRK1-204ENST00000555351 TMEM134Q9H6X4 195 aa13.06□□□□□ -0.32
VRK1-204ENST00000555351 HES2Q9Y543 173 aa13.06□□□□□ -0.32
VRK1-204ENST00000555351 HCFC2Q9Y5Z7 792 aa13.06□□□□□ -0.32
VRK1-204ENST00000555351 TDRD15B5MCY1 1934 aaKnown RBP13.05□□□□□ -0.32
VRK1-204ENST00000555351 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP13.05□□□□□ -0.32
VRK1-204ENST00000555351 LOC730098B7Z3J9 87 aa13.05□□□□□ -0.32
VRK1-204ENST00000555351 E9PMD0 336 aa13.05□□□□□ -0.32
VRK1-204ENST00000555351 K7ERI5 159 aa13.05□□□□□ -0.32
VRK1-204ENST00000555351 LILRB3O75022 631 aa13.05□□□□□ -0.32
VRK1-204ENST00000555351 NPTXRO95502 500 aa13.05□□□□□ -0.32
VRK1-204ENST00000555351 SOD2P04179 222 aa13.05□□□□□ -0.32
VRK1-204ENST00000555351 SCNN1GP51170 649 aa13.05□□□□□ -0.32
VRK1-204ENST00000555351 PTPN14Q15678 1187 aa13.05□□□□□ -0.32
VRK1-204ENST00000555351 TMEM31Q5JXX7 168 aa13.05□□□□□ -0.32
VRK1-204ENST00000555351 RINT1Q6NUQ1 792 aa13.05□□□□□ -0.32
VRK1-204ENST00000555351 SYCE2Q6PIF2 218 aa13.05□□□□□ -0.32
VRK1-204ENST00000555351 C1orf186Q6ZWK4 172 aa13.05□□□□□ -0.32
VRK1-204ENST00000555351 TMEM87AQ8NBN3 555 aa13.05□□□□□ -0.32
VRK1-204ENST00000555351 KHSRPQ92945 711 aaKnown RBP eCLIP13.05□□□□□ -0.323e-6■■■■□ 21
VRK1-204ENST00000555351 KCNN1Q92952 543 aa13.05□□□□□ -0.32
VRK1-204ENST00000555351 NECTIN4Q96NY8 510 aa13.05□□□□□ -0.32
VRK1-204ENST00000555351 COLEC11Q9BWP8 271 aa13.05□□□□□ -0.32
VRK1-204ENST00000555351 VN1R3Q9BXE9 311 aa13.05□□□□□ -0.32
VRK1-204ENST00000555351 MRPL17Q9NRX2 175 aaKnown RBP13.05□□□□□ -0.32
VRK1-204ENST00000555351 ARHGAP28Q9P2N2 729 aa13.05□□□□□ -0.32
VRK1-204ENST00000555351 ARIH1Q9Y4X5 557 aaPredicted RBP13.05□□□□□ -0.32
VRK1-204ENST00000555351 PP2D1A8MPX8 630 aa13.04□□□□□ -0.32
VRK1-204ENST00000555351 DCXO43602 365 aa13.04□□□□□ -0.32
VRK1-204ENST00000555351 NPTX2P47972 431 aa13.04□□□□□ -0.32
VRK1-204ENST00000555351 DMP1Q13316 513 aaPredicted RBP13.04□□□□□ -0.32
VRK1-204ENST00000555351 HERC4Q5GLZ8 1057 aaPredicted RBP13.04□□□□□ -0.32
VRK1-204ENST00000555351 CES5AQ6NT32 575 aa13.04□□□□□ -0.32
VRK1-204ENST00000555351 DAW1Q8N136 415 aa13.04□□□□□ -0.32
VRK1-204ENST00000555351 SYT2Q8N9I0 419 aaPredicted RBP13.04□□□□□ -0.32
VRK1-204ENST00000555351 SLC22A17Q8WUG5 538 aa13.04□□□□□ -0.32
VRK1-204ENST00000555351 SPIRE2Q8WWL2 714 aa13.04□□□□□ -0.32
VRK1-204ENST00000555351 ZFP42Q96MM3 310 aa13.04□□□□□ -0.32
VRK1-204ENST00000555351 RPS6KC1Q96S38 1066 aa13.04□□□□□ -0.32
VRK1-204ENST00000555351 HERC2P3Q9BVR0 1158 aa13.04□□□□□ -0.32
VRK1-204ENST00000555351 ADAM7Q9H2U9 754 aa13.04□□□□□ -0.32
VRK1-204ENST00000555351 MARCH5Q9NX47 278 aa13.04□□□□□ -0.32
VRK1-204ENST00000555351 MIOSQ9NXC5 875 aa13.04□□□□□ -0.32
VRK1-204ENST00000555351 DPP7Q9UHL4 492 aa13.04□□□□□ -0.32
VRK1-204ENST00000555351 TNFSF13BQ9Y275 285 aa13.04□□□□□ -0.32
VRK1-204ENST00000555351 VWA3AA6NCI4 1184 aa13.03□□□□□ -0.32
VRK1-204ENST00000555351 TTLL13PA6NNM8 815 aa13.03□□□□□ -0.32
VRK1-204ENST00000555351 HIP1RO75146 1068 aa13.03□□□□□ -0.32
VRK1-204ENST00000555351 URODP06132 367 aa13.03□□□□□ -0.32
VRK1-204ENST00000555351 AKAP5P24588 427 aa13.03□□□□□ -0.32
VRK1-204ENST00000555351 CDC25AP30304 524 aa13.03□□□□□ -0.32
VRK1-204ENST00000555351 LONP1P36776 959 aaKnown RBP13.03□□□□□ -0.32
VRK1-204ENST00000555351 MTHFRP42898 656 aa13.03□□□□□ -0.32
VRK1-204ENST00000555351 OR1G1P47890 313 aa13.03□□□□□ -0.32
VRK1-204ENST00000555351 PEX3P56589 373 aa13.03□□□□□ -0.32
VRK1-204ENST00000555351 RBM10P98175 930 aaKnown RBP13.03□□□□□ -0.32
VRK1-204ENST00000555351 CREMQ03060 361 aa13.03□□□□□ -0.32
VRK1-204ENST00000555351 MAPK7Q13164 816 aa13.03□□□□□ -0.32
VRK1-204ENST00000555351 TUSC3Q13454 348 aa13.03□□□□□ -0.32
VRK1-204ENST00000555351 TMEM119Q4V9L6 283 aa13.03□□□□□ -0.32
VRK1-204ENST00000555351 ATF7IP2Q5U623 682 aa13.03□□□□□ -0.32
VRK1-204ENST00000555351 ELMSAN1Q6PJG2 1045 aa13.03□□□□□ -0.32
VRK1-204ENST00000555351 CYP26C1Q6V0L0 522 aa13.03□□□□□ -0.32
VRK1-204ENST00000555351 KCNK18Q7Z418 384 aa13.03□□□□□ -0.32
VRK1-204ENST00000555351 CDR2LQ86X02 465 aaPredicted RBP13.03□□□□□ -0.32
VRK1-204ENST00000555351 HDAC7Q8WUI4 952 aa13.03□□□□□ -0.32
VRK1-204ENST00000555351 CDK5RAP3Q96JB5 506 aa13.03□□□□□ -0.32
VRK1-204ENST00000555351 RIPOR3Q96MK2 946 aa13.03□□□□□ -0.32
VRK1-204ENST00000555351 PNMA5Q96PV4 448 aa13.03□□□□□ -0.32
VRK1-204ENST00000555351 RUSC1Q9BVN2 902 aa13.03□□□□□ -0.32
VRK1-204ENST00000555351 APOL6Q9BWW8 343 aa13.03□□□□□ -0.32
VRK1-204ENST00000555351 MRPL4Q9BYD3 311 aaKnown RBP13.03□□□□□ -0.32
VRK1-204ENST00000555351 RHOBTB2Q9BYZ6 727 aa13.03□□□□□ -0.32
VRK1-204ENST00000555351 RXFP1Q9HBX9 757 aa13.03□□□□□ -0.32
VRK1-204ENST00000555351 KMT5AQ9NQR1 393 aa13.03□□□□□ -0.32
VRK1-204ENST00000555351 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP13.03□□□□□ -0.32
VRK1-204ENST00000555351 CHST7Q9NS84 486 aa13.03□□□□□ -0.32
VRK1-204ENST00000555351 FOXD4L1Q9NU39 408 aa13.03□□□□□ -0.32
VRK1-204ENST00000555351 PARP2Q9UGN5 583 aa13.03□□□□□ -0.32
VRK1-204ENST00000555351 MORC2Q9Y6X9 1032 aaPredicted RBP13.03□□□□□ -0.32
VRK1-204ENST00000555351 CCDC169A6NNP5 214 aa13.02□□□□□ -0.33
VRK1-204ENST00000555351 PRR33A8MZF0 331 aa13.02□□□□□ -0.33
VRK1-204ENST00000555351 H0YCG3 227 aa13.02□□□□□ -0.33
VRK1-204ENST00000555351 RECQL4O94761 1208 aa13.02□□□□□ -0.33
VRK1-204ENST00000555351 BRD1O95696 1058 aa13.02□□□□□ -0.33
VRK1-204ENST00000555351 THP07101 528 aa13.02□□□□□ -0.33
VRK1-204ENST00000555351 ADH1AP07327 375 aa13.02□□□□□ -0.33
VRK1-204ENST00000555351 UBA7P41226 1012 aa13.02□□□□□ -0.33
VRK1-204ENST00000555351 GLUD2P49448 558 aa13.02□□□□□ -0.33
VRK1-204ENST00000555351 SMTNP53814 917 aa13.02□□□□□ -0.33
VRK1-204ENST00000555351 SLC12A3P55017 1021 aa13.02□□□□□ -0.33
VRK1-204ENST00000555351 DSG1Q02413 1049 aa13.02□□□□□ -0.33
VRK1-204ENST00000555351 TMEM132AQ24JP5 1023 aa13.02□□□□□ -0.33
VRK1-204ENST00000555351 NT5DC1Q5TFE4 455 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms