RNA–Protein interactions for RNA: ENST00000555213.1

SHMT2-218, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 611 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-218ENST00000555213 SYCP3Q8IZU3 236 aa11.94□□□□□ -0.5
SHMT2-218ENST00000555213 AOPEPQ8N6M6 819 aa11.94□□□□□ -0.5
SHMT2-218ENST00000555213 GLIS3Q8NEA6 775 aa11.94□□□□□ -0.5
SHMT2-218ENST00000555213 TET1Q8NFU7 2136 aa11.94□□□□□ -0.5
SHMT2-218ENST00000555213 ENOX1Q8TC92 643 aaKnown RBP11.94□□□□□ -0.5
SHMT2-218ENST00000555213 TOP1MTQ969P6 601 aa11.94□□□□□ -0.5
SHMT2-218ENST00000555213 ACCSQ96QU6 501 aa11.94□□□□□ -0.5
SHMT2-218ENST00000555213 YME1L1Q96TA2 773 aa11.94□□□□□ -0.5
SHMT2-218ENST00000555213 TCHPQ9BT92 498 aa11.94□□□□□ -0.5
SHMT2-218ENST00000555213 GTPBP4Q9BZE4 634 aaKnown RBP11.94□□□□□ -0.5
SHMT2-218ENST00000555213 PDZD7Q9H5P4 517 aa11.94□□□□□ -0.5
SHMT2-218ENST00000555213 TMEM206Q9H813 350 aa11.94□□□□□ -0.5
SHMT2-218ENST00000555213 ANKFY1Q9P2R3 1169 aa11.94□□□□□ -0.5
SHMT2-218ENST00000555213 MSRAQ9UJ68 235 aa11.94□□□□□ -0.5
SHMT2-218ENST00000555213 TNFSF13BQ9Y275 285 aa11.94□□□□□ -0.5
SHMT2-218ENST00000555213 PCDHB2Q9Y5E7 798 aa11.94□□□□□ -0.5
SHMT2-218ENST00000555213 MICAL3Q7RTP6 2002 aa11.94□□□□□ -0.5
SHMT2-218ENST00000555213 EIF3DO15371 548 aaKnown RBP eCLIP11.93□□□□□ -0.5
SHMT2-218ENST00000555213 TOM1L1O75674 476 aa11.93□□□□□ -0.5
SHMT2-218ENST00000555213 KIF20AO95235 890 aa11.93□□□□□ -0.5
SHMT2-218ENST00000555213 NPTXRO95502 500 aa11.93□□□□□ -0.5
SHMT2-218ENST00000555213 EOMESO95936 686 aa11.93□□□□□ -0.5
SHMT2-218ENST00000555213 PMS1P54277 932 aaKnown RBP11.93□□□□□ -0.5
SHMT2-218ENST00000555213 SMAD3P84022 425 aaKnown RBP11.93□□□□□ -0.5
SHMT2-218ENST00000555213 PSMD2Q13200 908 aa11.93□□□□□ -0.5
SHMT2-218ENST00000555213 NOLC1Q14978 699 aaKnown RBP eCLIP11.93□□□□□ -0.5
SHMT2-218ENST00000555213 GLB1LQ6UWU2 654 aa11.93□□□□□ -0.5
SHMT2-218ENST00000555213 MPZL3Q6UWV2 235 aa11.93□□□□□ -0.5
SHMT2-218ENST00000555213 ECHDC2Q86YB7 292 aa11.93□□□□□ -0.5
SHMT2-218ENST00000555213 FIZ1Q96SL8 496 aa11.93□□□□□ -0.5
SHMT2-218ENST00000555213 ACO2Q99798 780 aaKnown RBP11.93□□□□□ -0.5
SHMT2-218ENST00000555213 TARS2Q9BW92 718 aaKnown RBP11.93□□□□□ -0.5
SHMT2-218ENST00000555213 NAT10Q9H0A0 1025 aaKnown RBP11.93□□□□□ -0.5
SHMT2-218ENST00000555213 SLC39A2Q9NP94 309 aa11.93□□□□□ -0.5
SHMT2-218ENST00000555213 UBN1Q9NPG3 1134 aa11.93□□□□□ -0.5
SHMT2-218ENST00000555213 FANCLQ9NW38 375 aa11.93□□□□□ -0.5
SHMT2-218ENST00000555213 MAPK8IP1Q9UQF2 711 aa11.93□□□□□ -0.5
SHMT2-218ENST00000555213 INSL6Q9Y581 213 aa11.93□□□□□ -0.5
SHMT2-218ENST00000555213 PCDHA11Q9Y5I1 949 aa11.93□□□□□ -0.5
SHMT2-218ENST00000555213 MYH11P35749 1972 aa11.92□□□□□ -0.5
SHMT2-218ENST00000555213 CLDN3O15551 220 aa11.92□□□□□ -0.5
SHMT2-218ENST00000555213 ZNF623O75123 536 aa11.92□□□□□ -0.5
SHMT2-218ENST00000555213 PPP1R37O75864 691 aa11.92□□□□□ -0.5
SHMT2-218ENST00000555213 PIGRP01833 764 aa11.92□□□□□ -0.5
SHMT2-218ENST00000555213 MYBP10242 640 aa11.92□□□□□ -0.5
SHMT2-218ENST00000555213 MCF2P10911 925 aa11.92□□□□□ -0.5
SHMT2-218ENST00000555213 ITGA4P13612 1032 aa11.92□□□□□ -0.5
SHMT2-218ENST00000555213 HOXD13P35453 343 aa11.92□□□□□ -0.5
SHMT2-218ENST00000555213 FAM189BP81408 668 aa11.92□□□□□ -0.5
SHMT2-218ENST00000555213 MAPK8IP2Q13387 824 aaPredicted RBP11.92□□□□□ -0.5
SHMT2-218ENST00000555213 KYAT1Q16773 422 aa11.92□□□□□ -0.5
SHMT2-218ENST00000555213 ZC2HC1CQ53FD0 456 aaPredicted RBP11.92□□□□□ -0.5
SHMT2-218ENST00000555213 UBXN11Q5T124 520 aa11.92□□□□□ -0.5
SHMT2-218ENST00000555213 SLFN12LQ6IEE8 588 aa11.92□□□□□ -0.5
SHMT2-218ENST00000555213 EPM2AIP1Q7L775 607 aaPredicted RBP11.92□□□□□ -0.5
SHMT2-218ENST00000555213 TAS1R3Q7RTX0 852 aa11.92□□□□□ -0.5
SHMT2-218ENST00000555213 RTN4RL1Q86UN2 441 aaPredicted RBP11.92□□□□□ -0.5
SHMT2-218ENST00000555213 PDLIM2Q96JY6 352 aa11.92□□□□□ -0.5
SHMT2-218ENST00000555213 RAD9AQ99638 391 aa11.92□□□□□ -0.5
SHMT2-218ENST00000555213 DUSP9Q99956 384 aaKnown RBP11.92□□□□□ -0.5
SHMT2-218ENST00000555213 EIF2AQ9BY44 585 aaKnown RBP11.92□□□□□ -0.5
SHMT2-218ENST00000555213 MRPL9Q9BYD2 267 aaKnown RBP11.92□□□□□ -0.5
SHMT2-218ENST00000555213 SEMA6BQ9H3T3 888 aa11.92□□□□□ -0.5
SHMT2-218ENST00000555213 IPPQ9Y573 584 aa11.92□□□□□ -0.5
SHMT2-218ENST00000555213 TRIOBPQ9H2D6 2365 aa11.92□□□□□ -0.5
SHMT2-218ENST00000555213 ZMYM2Q9UBW7 1377 aa11.92□□□□□ -0.5
SHMT2-218ENST00000555213 HARSP12081 509 aaKnown RBP11.91□□□□□ -0.5
SHMT2-218ENST00000555213 ZNF18P17022 549 aa11.91□□□□□ -0.5
SHMT2-218ENST00000555213 CASP5P51878 434 aa11.91□□□□□ -0.5
SHMT2-218ENST00000555213 YARSP54577 528 aaKnown RBP11.91□□□□□ -0.5
SHMT2-218ENST00000555213 STX17P56962 302 aa11.91□□□□□ -0.5
SHMT2-218ENST00000555213 HSP90AA2PQ14568 343 aaPredicted RBP11.91□□□□□ -0.5
SHMT2-218ENST00000555213 SPATA1Q5VX52 437 aa11.91□□□□□ -0.5
SHMT2-218ENST00000555213 FAM109BQ6ICB4 259 aaPredicted RBP11.91□□□□□ -0.5
SHMT2-218ENST00000555213 CENPPQ6IPU0 288 aa11.91□□□□□ -0.5
SHMT2-218ENST00000555213 HS2ST1Q7LGA3 356 aa11.91□□□□□ -0.5
SHMT2-218ENST00000555213 APTXQ7Z2E3 356 aaKnown RBP11.91□□□□□ -0.5
SHMT2-218ENST00000555213 TMCO2Q7Z6W1 182 aaPredicted RBP11.91□□□□□ -0.5
SHMT2-218ENST00000555213 ZBTB33Q86T24 672 aa11.91□□□□□ -0.5
SHMT2-218ENST00000555213 ZNF598Q86UK7 904 aaKnown RBP11.91□□□□□ -0.5
SHMT2-218ENST00000555213 CDR2LQ86X02 465 aaPredicted RBP11.91□□□□□ -0.5
SHMT2-218ENST00000555213 IRF2BP1Q8IU81 584 aa11.91□□□□□ -0.5
SHMT2-218ENST00000555213 CMTR2Q8IYT2 770 aaKnown RBP11.91□□□□□ -0.5
SHMT2-218ENST00000555213 LRRC43Q8N309 656 aa11.91□□□□□ -0.5
SHMT2-218ENST00000555213 GOLGA5Q8TBA6 731 aa11.91□□□□□ -0.5
SHMT2-218ENST00000555213 URGCPQ8TCY9 931 aa11.91□□□□□ -0.5
SHMT2-218ENST00000555213 PPP1R9BQ96SB3 815 aa11.91□□□□□ -0.5
SHMT2-218ENST00000555213 CCDC94Q9BW85 323 aaPredicted RBP11.91□□□□□ -0.5
SHMT2-218ENST00000555213 STRA6Q9BX79 667 aa11.91□□□□□ -0.5
SHMT2-218ENST00000555213 TMEM117Q9H0C3 514 aa11.91□□□□□ -0.5
SHMT2-218ENST00000555213 NXF3Q9H4D5 531 aaKnown RBP11.91□□□□□ -0.5
SHMT2-218ENST00000555213 RSAD1Q9HA92 442 aa11.91□□□□□ -0.5
SHMT2-218ENST00000555213 TOPORSQ9NS56 1045 aaPredicted RBP11.91□□□□□ -0.5
SHMT2-218ENST00000555213 SAMSN1Q9NSI8 373 aaKnown RBP11.91□□□□□ -0.5
SHMT2-218ENST00000555213 RWDD2AQ9UIY3 292 aa11.91□□□□□ -0.5
SHMT2-218ENST00000555213 TTLL13PA6NNM8 815 aa11.9□□□□□ -0.5
SHMT2-218ENST00000555213 TBKBP1A7MCY6 615 aa11.9□□□□□ -0.5
SHMT2-218ENST00000555213 SMTNL1A8MU46 457 aa11.9□□□□□ -0.5
SHMT2-218ENST00000555213 GRXCR1A8MXD5 290 aa11.9□□□□□ -0.5
SHMT2-218ENST00000555213 DGKIO75912 1065 aa11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms