RNA–Protein interactions for RNA: ENST00000555178.5

TDP1-211, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 5

Gene TDP1, Length 2,200 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-211ENST00000555178 KCNN1Q92952 543 aa11.76□□□□□ -0.53
TDP1-211ENST00000555178 TOX2Q96NM4 488 aa11.76□□□□□ -0.53
TDP1-211ENST00000555178 C2orf40Q9H1Z8 148 aa11.76□□□□□ -0.53
TDP1-211ENST00000555178 ERVK-5Q9HDB9 667 aa11.76□□□□□ -0.53
TDP1-211ENST00000555178 PRDM5Q9NQX1 630 aaPredicted RBP11.76□□□□□ -0.53
TDP1-211ENST00000555178 HSPBP1Q9NZL4 362 aa11.76□□□□□ -0.53
TDP1-211ENST00000555178 LIMA1Q9UHB6 759 aaKnown RBP11.76□□□□□ -0.53
TDP1-211ENST00000555178 PDCD11Q14690 1871 aaKnown RBP11.76□□□□□ -0.53
TDP1-211ENST00000555178 CNTNAP2Q9UHC6 1331 aa11.76□□□□□ -0.53
TDP1-211ENST00000555178 CETN3O15182 167 aa11.75□□□□□ -0.53
TDP1-211ENST00000555178 RPS6KA5O75582 802 aa11.75□□□□□ -0.53
TDP1-211ENST00000555178 CLTBP09497 229 aa11.75□□□□□ -0.53
TDP1-211ENST00000555178 PRKCSHP14314 528 aaPredicted RBP11.75□□□□□ -0.53
TDP1-211ENST00000555178 SELPP16109 830 aa11.75□□□□□ -0.53
TDP1-211ENST00000555178 MTIF2P46199 727 aaKnown RBP11.75□□□□□ -0.53
TDP1-211ENST00000555178 COPB1P53618 953 aaKnown RBP11.75□□□□□ -0.53
TDP1-211ENST00000555178 RBL2Q08999 1139 aa11.75□□□□□ -0.53
TDP1-211ENST00000555178 CCDC40Q4G0X9 1142 aa11.75□□□□□ -0.53
TDP1-211ENST00000555178 MIIPQ5JXC2 388 aa11.75□□□□□ -0.53
TDP1-211ENST00000555178 FOXR2Q6PJQ5 311 aa11.75□□□□□ -0.53
TDP1-211ENST00000555178 RSPH3Q86UC2 560 aa11.75□□□□□ -0.53
TDP1-211ENST00000555178 CBWD2Q8IUF1 395 aa11.75□□□□□ -0.53
TDP1-211ENST00000555178 CCDC155Q8N6L0 562 aa11.75□□□□□ -0.53
TDP1-211ENST00000555178 SPC24Q8NBT2 197 aa11.75□□□□□ -0.53
TDP1-211ENST00000555178 TUBGCP2Q9BSJ2 902 aa11.75□□□□□ -0.53
TDP1-211ENST00000555178 CDT1Q9H211 546 aa11.75□□□□□ -0.53
TDP1-211ENST00000555178 RNF39Q9H2S5 420 aa11.75□□□□□ -0.53
TDP1-211ENST00000555178 TMEM39AQ9NV64 488 aa11.75□□□□□ -0.53
TDP1-211ENST00000555178 PRMT7Q9NVM4 692 aaPredicted RBP11.75□□□□□ -0.53
TDP1-211ENST00000555178 MAGEC2Q9UBF1 373 aaPredicted RBP11.75□□□□□ -0.53
TDP1-211ENST00000555178 A0A0B4J269 797 aa11.75□□□□□ -0.53
TDP1-211ENST00000555178 A0A1B0GTH6 734 aa11.75□□□□□ -0.53
TDP1-211ENST00000555178 H0YCG3 227 aa11.75□□□□□ -0.53
TDP1-211ENST00000555178 TULP1O00294 542 aaPredicted RBP11.75□□□□□ -0.53
TDP1-211ENST00000555178 IBSPP21815 317 aaPredicted RBP11.75□□□□□ -0.53
TDP1-211ENST00000555178 EEF1GP26641 437 aaKnown RBP11.75□□□□□ -0.53
TDP1-211ENST00000555178 TSHZ1Q6ZSZ6 1077 aa11.75□□□□□ -0.53
TDP1-211ENST00000555178 DEFB128Q7Z7B8 93 aa11.75□□□□□ -0.53
TDP1-211ENST00000555178 POMGNT1Q8WZA1 660 aa11.75□□□□□ -0.53
TDP1-211ENST00000555178 CEP63Q96MT8 703 aa11.75□□□□□ -0.53
TDP1-211ENST00000555178 MRPL4Q9BYD3 311 aaKnown RBP11.75□□□□□ -0.53
TDP1-211ENST00000555178 AGPAT5Q9NUQ2 364 aa11.75□□□□□ -0.53
TDP1-211ENST00000555178 EXOC7Q9UPT5 735 aa11.75□□□□□ -0.53
TDP1-211ENST00000555178 PIN4Q9Y237 131 aaKnown RBP11.75□□□□□ -0.53
TDP1-211ENST00000555178 STYXL1Q9Y6J8 313 aa11.75□□□□□ -0.53
TDP1-211ENST00000555178 A0A1B0GUA9 196 aa11.74□□□□□ -0.53
TDP1-211ENST00000555178 PES1O00541 588 aaKnown RBP11.74□□□□□ -0.53
TDP1-211ENST00000555178 EXOC3O60645 756 aa11.74□□□□□ -0.53
TDP1-211ENST00000555178 ERLIN2O94905 339 aa11.74□□□□□ -0.53
TDP1-211ENST00000555178 NPTXRO95502 500 aa11.74□□□□□ -0.53
TDP1-211ENST00000555178 SYN1P17600 705 aa11.74□□□□□ -0.53
TDP1-211ENST00000555178 DLG4P78352 724 aa11.74□□□□□ -0.53
TDP1-211ENST00000555178 NFIL3Q16649 462 aa11.74□□□□□ -0.53
TDP1-211ENST00000555178 FILIP1Q7Z7B0 1213 aa11.74□□□□□ -0.53
TDP1-211ENST00000555178 THNSL1Q8IYQ7 743 aa11.74□□□□□ -0.53
TDP1-211ENST00000555178 BORCS6Q96GS4 357 aa11.74□□□□□ -0.53
TDP1-211ENST00000555178 FAM213AQ9BRX8 229 aa11.74□□□□□ -0.53
TDP1-211ENST00000555178 TNFSF13BQ9Y275 285 aa11.74□□□□□ -0.53
TDP1-211ENST00000555178 MROH7Q68CQ1 1323 aa11.74□□□□□ -0.53
TDP1-211ENST00000555178 M0QZ92 97 aa11.74□□□□□ -0.53
TDP1-211ENST00000555178 N4BP3O15049 544 aa11.74□□□□□ -0.53
TDP1-211ENST00000555178 TLR3O15455 904 aaKnown RBP11.74□□□□□ -0.53
TDP1-211ENST00000555178 AFF1P51825 1210 aaKnown RBP11.74□□□□□ -0.53
TDP1-211ENST00000555178 SPAG1Q07617 926 aa11.74□□□□□ -0.53
TDP1-211ENST00000555178 ZNF568Q3ZCX4 644 aa11.74□□□□□ -0.53
TDP1-211ENST00000555178 TRIM59Q8IWR1 403 aa11.74□□□□□ -0.53
TDP1-211ENST00000555178 FAM186BQ8IYM0 893 aa11.74□□□□□ -0.53
TDP1-211ENST00000555178 C7orf61Q8IZ16 206 aa11.74□□□□□ -0.53
TDP1-211ENST00000555178 TNS4Q8IZW8 715 aa11.74□□□□□ -0.53
TDP1-211ENST00000555178 DBF4BQ8NFT6 615 aa11.74□□□□□ -0.53
TDP1-211ENST00000555178 GOLGA5Q8TBA6 731 aa11.74□□□□□ -0.53
TDP1-211ENST00000555178 CAGE1Q8TC20 777 aa11.74□□□□□ -0.53
TDP1-211ENST00000555178 PDLIM2Q96JY6 352 aa11.74□□□□□ -0.53
TDP1-211ENST00000555178 POP1Q99575 1024 aaKnown RBP11.74□□□□□ -0.53
TDP1-211ENST00000555178 TCHPQ9BT92 498 aa11.74□□□□□ -0.53
TDP1-211ENST00000555178 RTN4Q9NQC3 1192 aaKnown RBP11.74□□□□□ -0.53
TDP1-211ENST00000555178 PTPRJQ12913 1337 aa11.73□□□□□ -0.53
TDP1-211ENST00000555178 LAMA3Q16787 3333 aa11.73□□□□□ -0.53
TDP1-211ENST00000555178 LRRC10BA6NIK2 292 aa11.73□□□□□ -0.53
TDP1-211ENST00000555178 LRRN2O75325 713 aa11.73□□□□□ -0.53
TDP1-211ENST00000555178 TOM1L1O75674 476 aa11.73□□□□□ -0.53
TDP1-211ENST00000555178 TRIM49P0CI25 452 aa11.73□□□□□ -0.53
TDP1-211ENST00000555178 TRIM49CP0CI26 452 aa11.73□□□□□ -0.53
TDP1-211ENST00000555178 CSF2RAP15509 400 aa11.73□□□□□ -0.53
TDP1-211ENST00000555178 RPL13P26373 211 aaKnown RBP11.73□□□□□ -0.53
TDP1-211ENST00000555178 MATR3P43243 847 aaKnown RBP eCLIP11.73□□□□□ -0.53
TDP1-211ENST00000555178 KLK7P49862 253 aa11.73□□□□□ -0.53
TDP1-211ENST00000555178 DSC3Q14574 896 aa11.73□□□□□ -0.53
TDP1-211ENST00000555178 NR1I3Q14994 352 aa11.73□□□□□ -0.53
TDP1-211ENST00000555178 TMEM132AQ24JP5 1023 aa11.73□□□□□ -0.53
TDP1-211ENST00000555178 DCAF17Q5H9S7 520 aaPredicted RBP11.73□□□□□ -0.53
TDP1-211ENST00000555178 C1orf220Q5T0J3 134 aa11.73□□□□□ -0.53
TDP1-211ENST00000555178 MPZL3Q6UWV2 235 aa11.73□□□□□ -0.53
TDP1-211ENST00000555178 ZPBP2Q6X784 338 aa11.73□□□□□ -0.53
TDP1-211ENST00000555178 SLC9A9Q8IVB4 645 aa11.73□□□□□ -0.53
TDP1-211ENST00000555178 FAM114A1Q8IWE2 563 aa11.73□□□□□ -0.53
TDP1-211ENST00000555178 C12orf56Q8IXR9 622 aa11.73□□□□□ -0.53
TDP1-211ENST00000555178 XXYLT1Q8NBI6 393 aa11.73□□□□□ -0.53
TDP1-211ENST00000555178 SMG8Q8ND04 991 aaKnown RBP11.73□□□□□ -0.53
TDP1-211ENST00000555178 ELMO3Q96BJ8 720 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms