RNA–Protein interactions for RNA: ENST00000553683.1

VRK1-202, Transcript of vaccinia related kinase 1, humanhuman

TSL 3

Gene VRK1, Length 247 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-202ENST00000553683 CMIPQ8IY22 773 aa4.52□□□□□ -1.69
VRK1-202ENST00000553683 ELOA2Q8IYF1 753 aaPredicted RBP4.52□□□□□ -1.69
VRK1-202ENST00000553683 ATXN2LQ8WWM7 1075 aaKnown RBP4.52□□□□□ -1.69
VRK1-202ENST00000553683 RIN2Q8WYP3 895 aaPredicted RBP4.52□□□□□ -1.69
VRK1-202ENST00000553683 HOXB13Q92826 284 aaPredicted RBP4.52□□□□□ -1.69
VRK1-202ENST00000553683 CPPED1Q9BRF8 314 aaPredicted RBP4.52□□□□□ -1.69
VRK1-202ENST00000553683 QRSL1Q9H0R6 528 aaKnown RBP4.52□□□□□ -1.69
VRK1-202ENST00000553683 HDAC5Q9UQL6 1122 aa4.52□□□□□ -1.69
VRK1-202ENST00000553683 CYR61O00622 381 aa4.51□□□□□ -1.69
VRK1-202ENST00000553683 RECQL4O94761 1208 aa4.51□□□□□ -1.69
VRK1-202ENST00000553683 AMHP03971 560 aa4.51□□□□□ -1.69
VRK1-202ENST00000553683 RBP3P10745 1247 aa4.51□□□□□ -1.69
VRK1-202ENST00000553683 IL2RBP14784 551 aa4.51□□□□□ -1.69
VRK1-202ENST00000553683 ACVRL1P37023 503 aa4.51□□□□□ -1.69
VRK1-202ENST00000553683 GUCY2FP51841 1108 aa4.51□□□□□ -1.69
VRK1-202ENST00000553683 CDK17Q00537 523 aa4.51□□□□□ -1.69
VRK1-202ENST00000553683 SRSF2Q01130 221 aaKnown RBP4.51□□□□□ -1.69
VRK1-202ENST00000553683 TOB2Q14106 344 aaPredicted RBP4.51□□□□□ -1.69
VRK1-202ENST00000553683 VPS72Q15906 364 aa4.51□□□□□ -1.69
VRK1-202ENST00000553683 RABL3Q5HYI8 236 aa4.51□□□□□ -1.69
VRK1-202ENST00000553683 Q6ZRM9 215 aa4.51□□□□□ -1.69
VRK1-202ENST00000553683 ZNF572Q7Z3I7 529 aaPredicted RBP4.51□□□□□ -1.69
VRK1-202ENST00000553683 CBARPQ8N350 705 aaPredicted RBP4.51□□□□□ -1.69
VRK1-202ENST00000553683 AMER2Q8N7J2 671 aa4.51□□□□□ -1.69
VRK1-202ENST00000553683 PRPF38AQ8NAV1 312 aaKnown RBP4.51□□□□□ -1.69
VRK1-202ENST00000553683 ABCF1Q8NE71 845 aaKnown RBP eCLIP4.51□□□□□ -1.69
VRK1-202ENST00000553683 COG1Q8WTW3 980 aa4.51□□□□□ -1.69
VRK1-202ENST00000553683 TGFBRAP1Q8WUH2 860 aa4.51□□□□□ -1.69
VRK1-202ENST00000553683 CASKIN2Q8WXE0 1202 aa4.51□□□□□ -1.69
VRK1-202ENST00000553683 DCLRE1CQ96SD1 692 aaKnown RBP4.51□□□□□ -1.69
VRK1-202ENST00000553683 ADI1Q9BV57 179 aa4.51□□□□□ -1.69
VRK1-202ENST00000553683 SLC13A1Q9BZW2 595 aa4.51□□□□□ -1.69
VRK1-202ENST00000553683 EPC1Q9H2F5 836 aa4.51□□□□□ -1.69
VRK1-202ENST00000553683 PCDH12Q9NPG4 1184 aa4.51□□□□□ -1.69
VRK1-202ENST00000553683 COL4A3BPQ9Y5P4 624 aa4.51□□□□□ -1.69
VRK1-202ENST00000553683 TBKBP1A7MCY6 615 aa4.5□□□□□ -1.69
VRK1-202ENST00000553683 GRXCR1A8MXD5 290 aa4.5□□□□□ -1.69
VRK1-202ENST00000553683 PRR5-ARHGAP8B1AHC4 643 aa4.5□□□□□ -1.69
VRK1-202ENST00000553683 TEX33O43247 280 aa4.5□□□□□ -1.69
VRK1-202ENST00000553683 AKR1B10O60218 316 aa4.5□□□□□ -1.69
VRK1-202ENST00000553683 STC2O76061 302 aa4.5□□□□□ -1.69
VRK1-202ENST00000553683 C6P13671 934 aa4.5□□□□□ -1.69
VRK1-202ENST00000553683 IBSPP21815 317 aaPredicted RBP4.5□□□□□ -1.69
VRK1-202ENST00000553683 GDF5P43026 501 aa4.5□□□□□ -1.69
VRK1-202ENST00000553683 PPP3CAQ08209 521 aa4.5□□□□□ -1.69
VRK1-202ENST00000553683 TUBA3CQ13748 450 aa4.5□□□□□ -1.69
VRK1-202ENST00000553683 BMT2Q1RMZ1 405 aa4.5□□□□□ -1.69
VRK1-202ENST00000553683 TUBA3EQ6PEY2 450 aa4.5□□□□□ -1.69
VRK1-202ENST00000553683 C1orf162Q8NEQ5 155 aaPredicted RBP4.5□□□□□ -1.69
VRK1-202ENST00000553683 DDX55Q8NHQ9 600 aaKnown RBP eCLIP4.5□□□□□ -1.69
VRK1-202ENST00000553683 ZFP28Q8NHY6 868 aa4.5□□□□□ -1.69
VRK1-202ENST00000553683 PLEKHG4BQ96PX9 1271 aa4.5□□□□□ -1.69
VRK1-202ENST00000553683 LSM14BQ9BX40 385 aaKnown RBP4.5□□□□□ -1.69
VRK1-202ENST00000553683 MOCS1Q9NZB8 636 aa4.5□□□□□ -1.69
VRK1-202ENST00000553683 SHTN1A0MZ66 631 aa4.49□□□□□ -1.69
VRK1-202ENST00000553683 GAGE12BA1L429 117 aa4.49□□□□□ -1.69
VRK1-202ENST00000553683 GAGE12HA6NDE8 117 aa4.49□□□□□ -1.69
VRK1-202ENST00000553683 SNRPA1P09661 255 aaKnown RBP4.49□□□□□ -1.69
VRK1-202ENST00000553683 GUCY1A2P33402 732 aa4.49□□□□□ -1.69
VRK1-202ENST00000553683 MCM7P33993 719 aa4.49□□□□□ -1.69
VRK1-202ENST00000553683 PTGS2P35354 604 aa4.49□□□□□ -1.69
VRK1-202ENST00000553683 PURAQ00577 322 aaKnown RBP4.49□□□□□ -1.69
VRK1-202ENST00000553683 LSM12Q3MHD2 195 aaKnown RBP4.49□□□□□ -1.69
VRK1-202ENST00000553683 Q6ZVL8 140 aa4.49□□□□□ -1.69
VRK1-202ENST00000553683 TRMT2AQ8IZ69 625 aaKnown RBP4.49□□□□□ -1.69
VRK1-202ENST00000553683 LENG9Q96B70 501 aa4.49□□□□□ -1.69
VRK1-202ENST00000553683 FAXDC2Q96IV6 333 aa4.49□□□□□ -1.69
VRK1-202ENST00000553683 NDC1Q9BTX1 674 aa4.49□□□□□ -1.69
VRK1-202ENST00000553683 KRTAP4-2Q9BYR5 136 aa4.49□□□□□ -1.69
VRK1-202ENST00000553683 TRIM8Q9BZR9 551 aa4.49□□□□□ -1.69
VRK1-202ENST00000553683 MANSC1Q9H8J5 431 aa4.49□□□□□ -1.69
VRK1-202ENST00000553683 LANCL2Q9NS86 450 aa4.49□□□□□ -1.69
VRK1-202ENST00000553683 MKS1Q9NXB0 559 aa4.49□□□□□ -1.69
VRK1-202ENST00000553683 SAP30BPQ9UHR5 308 aaKnown RBP4.49□□□□□ -1.69
VRK1-202ENST00000553683 MRFAP1Q9Y605 127 aa4.49□□□□□ -1.69
VRK1-202ENST00000553683 KLHL33A6NCF5 533 aa4.48□□□□□ -1.69
VRK1-202ENST00000553683 NARSO43776 548 aaKnown RBP4.48□□□□□ -1.69
VRK1-202ENST00000553683 C1SP09871 688 aa4.48□□□□□ -1.69
VRK1-202ENST00000553683 GSPT1P15170 499 aaKnown RBP4.48□□□□□ -1.69
VRK1-202ENST00000553683 ALOX15P16050 662 aaPredicted RBP4.48□□□□□ -1.69
VRK1-202ENST00000553683 MAKP20794 623 aa4.48□□□□□ -1.69
VRK1-202ENST00000553683 SREBF1P36956 1147 aa4.48□□□□□ -1.69
VRK1-202ENST00000553683 CDKN1CP49918 316 aaPredicted RBP4.48□□□□□ -1.69
VRK1-202ENST00000553683 CLRN1P58418 232 aa4.48□□□□□ -1.69
VRK1-202ENST00000553683 ABHD18Q0P651 414 aa4.48□□□□□ -1.69
VRK1-202ENST00000553683 MTMR1Q13613 665 aa4.48□□□□□ -1.69
VRK1-202ENST00000553683 PTPROQ16827 1216 aa4.48□□□□□ -1.69
VRK1-202ENST00000553683 FAM214AQ32MH5 1076 aa4.48□□□□□ -1.69
VRK1-202ENST00000553683 RRP12Q5JTH9 1297 aaKnown RBP4.48□□□□□ -1.69
VRK1-202ENST00000553683 PRAMEF14Q5SWL7 426 aa4.48□□□□□ -1.69
VRK1-202ENST00000553683 OTUD7BQ6GQQ9 843 aa4.48□□□□□ -1.69
VRK1-202ENST00000553683 EFCAB12Q6NXP0 572 aa4.48□□□□□ -1.69
VRK1-202ENST00000553683 Q8N1X5 172 aa4.48□□□□□ -1.69
VRK1-202ENST00000553683 MB21D1Q8N884 522 aa4.48□□□□□ -1.69
VRK1-202ENST00000553683 SLC46A2Q9BY10 475 aa4.48□□□□□ -1.69
VRK1-202ENST00000553683 ZNF341Q9BYN7 854 aa4.48□□□□□ -1.69
VRK1-202ENST00000553683 CPEB1Q9BZB8 566 aaKnown RBP4.48□□□□□ -1.69
VRK1-202ENST00000553683 CSRNP2Q9H175 543 aa4.48□□□□□ -1.69
VRK1-202ENST00000553683 KCNH6Q9H252 994 aa4.48□□□□□ -1.69
VRK1-202ENST00000553683 TMPRSS5Q9H3S3 457 aa4.48□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms