RNA–Protein interactions for RNA: ENST00000553289.5

SYNE2-208, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 5,261 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-208ENST00000553289 ZNF543Q08ER8 600 aa12.24□□□□□ -0.45
SYNE2-208ENST00000553289 SCARF1Q14162 830 aa12.24□□□□□ -0.45
SYNE2-208ENST00000553289 TMCO4Q5TGY1 634 aa12.24□□□□□ -0.45
SYNE2-208ENST00000553289 NBPF15Q8N660 670 aa12.24□□□□□ -0.45
SYNE2-208ENST00000553289 PRKAG2Q9UGJ0 569 aa12.24□□□□□ -0.45
SYNE2-208ENST00000553289 ABCA6Q8N139 1617 aa12.24□□□□□ -0.45
SYNE2-208ENST00000553289 ASB14A6NK59 587 aa12.24□□□□□ -0.45
SYNE2-208ENST00000553289 FOXN1O15353 648 aa12.24□□□□□ -0.45
SYNE2-208ENST00000553289 HSPA9P38646 679 aaKnown RBP12.24□□□□□ -0.45
SYNE2-208ENST00000553289 CDR2Q01850 454 aa12.24□□□□□ -0.45
SYNE2-208ENST00000553289 MAPRE2Q15555 327 aa12.24□□□□□ -0.45
SYNE2-208ENST00000553289 TKFCQ3LXA3 575 aa12.24□□□□□ -0.45
SYNE2-208ENST00000553289 RHPN2Q8IUC4 686 aa12.24□□□□□ -0.45
SYNE2-208ENST00000553289 ZBED8Q8IZ13 594 aa12.24□□□□□ -0.45
SYNE2-208ENST00000553289 RCOR2Q8IZ40 523 aa12.24□□□□□ -0.45
SYNE2-208ENST00000553289 PIP4K2CQ8TBX8 421 aa12.24□□□□□ -0.45
SYNE2-208ENST00000553289 MTMR4Q9NYA4 1195 aa12.24□□□□□ -0.45
SYNE2-208ENST00000553289 HDAC6Q9UBN7 1215 aa12.24□□□□□ -0.45
SYNE2-208ENST00000553289 FBXL5Q9UKA1 691 aa12.24□□□□□ -0.45
SYNE2-208ENST00000553289 A0A1W2PQJ5 194 aa12.23□□□□□ -0.45
SYNE2-208ENST00000553289 RECQLP46063 649 aaPredicted RBP12.23□□□□□ -0.45
SYNE2-208ENST00000553289 AP2B1P63010 937 aa12.23□□□□□ -0.45
SYNE2-208ENST00000553289 LDHDQ86WU2 507 aa12.23□□□□□ -0.45
SYNE2-208ENST00000553289 URGCPQ8TCY9 931 aa12.23□□□□□ -0.45
SYNE2-208ENST00000553289 BTBD6Q96KE9 485 aa12.23□□□□□ -0.45
SYNE2-208ENST00000553289 CRAMP1Q96RY5 1269 aa12.23□□□□□ -0.45
SYNE2-208ENST00000553289 NYAP2Q9P242 653 aa12.23□□□□□ -0.45
SYNE2-208ENST00000553289 APEX2Q9UBZ4 518 aa12.23□□□□□ -0.45
SYNE2-208ENST00000553289 PPP1R12AO14974 1030 aaPredicted RBP12.23□□□□□ -0.45
SYNE2-208ENST00000553289 DGAT1O75907 488 aa12.23□□□□□ -0.45
SYNE2-208ENST00000553289 TRMT10CQ7L0Y3 403 aaKnown RBP12.23□□□□□ -0.45
SYNE2-208ENST00000553289 SAAL1Q96ER3 474 aa12.23□□□□□ -0.45
SYNE2-208ENST00000553289 ZNF212Q9UDV6 495 aa12.23□□□□□ -0.45
SYNE2-208ENST00000553289 SMG5Q9UPR3 1016 aaKnown RBP12.23□□□□□ -0.45
SYNE2-208ENST00000553289 DLC1Q96QB1 1528 aa12.23□□□□□ -0.45
SYNE2-208ENST00000553289 TRIM49P0CI25 452 aa12.23□□□□□ -0.45
SYNE2-208ENST00000553289 TRIM49CP0CI26 452 aa12.23□□□□□ -0.45
SYNE2-208ENST00000553289 SCP2P22307 547 aa12.23□□□□□ -0.45
SYNE2-208ENST00000553289 EEF1DP29692 281 aaKnown RBP12.23□□□□□ -0.45
SYNE2-208ENST00000553289 HP1BP3Q5SSJ5 553 aaPredicted RBP12.23□□□□□ -0.45
SYNE2-208ENST00000553289 C1orf146Q5VVC0 180 aa12.23□□□□□ -0.45
SYNE2-208ENST00000553289 NUDCD3Q8IVD9 361 aa12.23□□□□□ -0.45
SYNE2-208ENST00000553289 C2orf69Q8N8R5 385 aa12.23□□□□□ -0.45
SYNE2-208ENST00000553289 LPAR1Q92633 364 aa12.23□□□□□ -0.45
SYNE2-208ENST00000553289 INTUQ9ULD6 942 aa12.23□□□□□ -0.45
SYNE2-208ENST00000553289 TTC7AQ9ULT0 858 aaPredicted RBP12.23□□□□□ -0.45
SYNE2-208ENST00000553289 FNDC3AQ9Y2H6 1198 aaKnown RBP12.23□□□□□ -0.45
SYNE2-208ENST00000553289 KDM6AO15550 1401 aaPredicted RBP12.23□□□□□ -0.45
SYNE2-208ENST00000553289 CSF1RP07333 972 aa12.23□□□□□ -0.45
SYNE2-208ENST00000553289 MCF2P10911 925 aa12.23□□□□□ -0.45
SYNE2-208ENST00000553289 YWHABP31946 246 aaKnown RBP12.23□□□□□ -0.45
SYNE2-208ENST00000553289 GYS2P54840 703 aa12.23□□□□□ -0.45
SYNE2-208ENST00000553289 KRT17Q04695 432 aa12.23□□□□□ -0.45
SYNE2-208ENST00000553289 NR1I3Q14994 352 aa12.23□□□□□ -0.45
SYNE2-208ENST00000553289 FAM102AQ5T9C2 384 aaPredicted RBP12.23□□□□□ -0.45
SYNE2-208ENST00000553289 GSPT2Q8IYD1 628 aaKnown RBP12.23□□□□□ -0.45
SYNE2-208ENST00000553289 TNIP3Q96KP6 325 aa12.23□□□□□ -0.45
SYNE2-208ENST00000553289 PCSK1NQ9UHG2 260 aa12.23□□□□□ -0.45
SYNE2-208ENST00000553289 ESYT3A0FGR9 886 aa12.22□□□□□ -0.45
SYNE2-208ENST00000553289 TMCC1O94876 653 aa12.22□□□□□ -0.45
SYNE2-208ENST00000553289 GUCY1A2P33402 732 aa12.22□□□□□ -0.45
SYNE2-208ENST00000553289 SERPINB4P48594 390 aa12.22□□□□□ -0.45
SYNE2-208ENST00000553289 NOP14P78316 857 aaKnown RBP12.22□□□□□ -0.45
SYNE2-208ENST00000553289 CCZ1BP86790 482 aa12.22□□□□□ -0.45
SYNE2-208ENST00000553289 CCZ1P86791 482 aaPredicted RBP12.22□□□□□ -0.45
SYNE2-208ENST00000553289 SPP2Q13103 211 aa12.22□□□□□ -0.45
SYNE2-208ENST00000553289 ZNF746Q6NUN9 644 aaPredicted RBP12.22□□□□□ -0.45
SYNE2-208ENST00000553289 GTSE1Q9NYZ3 720 aa12.22□□□□□ -0.45
SYNE2-208ENST00000553289 SMAPO00193 183 aa12.22□□□□□ -0.45
SYNE2-208ENST00000553289 APOL1O14791 398 aa12.22□□□□□ -0.45
SYNE2-208ENST00000553289 EXT2Q93063 718 aa12.22□□□□□ -0.45
SYNE2-208ENST00000553289 MMP19Q99542 508 aa12.22□□□□□ -0.45
SYNE2-208ENST00000553289 WWP1Q9H0M0 922 aa12.22□□□□□ -0.45
SYNE2-208ENST00000553289 GOLGA8MH3BSY2 632 aa12.22□□□□□ -0.45
SYNE2-208ENST00000553289 PHF2O75151 1096 aa12.22□□□□□ -0.45
SYNE2-208ENST00000553289 POLE2P56282 527 aa12.22□□□□□ -0.45
SYNE2-208ENST00000553289 HIF1AQ16665 826 aa12.22□□□□□ -0.45
SYNE2-208ENST00000553289 RASSF3Q86WH2 238 aa12.22□□□□□ -0.45
SYNE2-208ENST00000553289 WDR24Q96S15 920 aa12.22□□□□□ -0.45
SYNE2-208ENST00000553289 JPH1Q9HDC5 661 aaPredicted RBP12.22□□□□□ -0.45
SYNE2-208ENST00000553289 CHGBP05060 677 aa12.22□□□□□ -0.45
SYNE2-208ENST00000553289 ITIH2P19823 946 aa12.22□□□□□ -0.45
SYNE2-208ENST00000553289 XKR3Q5GH77 459 aa12.22□□□□□ -0.45
SYNE2-208ENST00000553289 RNF219Q5W0B1 726 aaPredicted RBP12.22□□□□□ -0.45
SYNE2-208ENST00000553289 ZC3H18Q86VM9 953 aaKnown RBP12.22□□□□□ -0.45
SYNE2-208ENST00000553289 CYTH2Q99418 400 aa12.22□□□□□ -0.45
SYNE2-208ENST00000553289 FAM217BQ9NTX9 383 aaPredicted RBP12.22□□□□□ -0.45
SYNE2-208ENST00000553289 FAM196BA6NMK8 535 aa12.21□□□□□ -0.45
SYNE2-208ENST00000553289 CREB3O43889 395 aa12.21□□□□□ -0.45
SYNE2-208ENST00000553289 MTHFD1LQ6UB35 978 aa12.21□□□□□ -0.45
SYNE2-208ENST00000553289 ALKBH8Q96BT7 664 aaKnown RBP12.21□□□□□ -0.45
SYNE2-208ENST00000553289 SPATA33Q96N06 139 aa12.21□□□□□ -0.45
SYNE2-208ENST00000553289 MKNK1Q9BUB5 465 aa12.21□□□□□ -0.45
SYNE2-208ENST00000553289 LMTK2Q8IWU2 1503 aa12.21□□□□□ -0.45
SYNE2-208ENST00000553289 A8MXQ7 604 aa12.21□□□□□ -0.45
SYNE2-208ENST00000553289 EIF3DO15371 548 aaKnown RBP eCLIP12.21□□□□□ -0.45
SYNE2-208ENST00000553289 P4HA2O15460 535 aa12.21□□□□□ -0.45
SYNE2-208ENST00000553289 PSMD3O43242 534 aa12.21□□□□□ -0.45
SYNE2-208ENST00000553289 ENTPD3O75355 529 aa12.21□□□□□ -0.45
SYNE2-208ENST00000553289 EFTUD2Q15029 972 aaKnown RBP eCLIP12.21□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms