RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 LPAR1Q92633 364 aa6.02□□□□□ -1.45
LIMA1-215ENST00000552823 RNF25Q96BH1 459 aaPredicted RBP6.02□□□□□ -1.45
LIMA1-215ENST00000552823 DCPSQ96C86 337 aaKnown RBP6.02□□□□□ -1.45
LIMA1-215ENST00000552823 CCDC114Q96M63 670 aa6.02□□□□□ -1.45
LIMA1-215ENST00000552823 MSTO1Q9BUK6 570 aa6.02□□□□□ -1.45
LIMA1-215ENST00000552823 NUP85Q9BW27 656 aa6.02□□□□□ -1.45
LIMA1-215ENST00000552823 TMEM206Q9H813 350 aa6.02□□□□□ -1.45
LIMA1-215ENST00000552823 C10orf88Q9H8K7 445 aa6.02□□□□□ -1.45
LIMA1-215ENST00000552823 XPNPEP1Q9NQW7 623 aa6.02□□□□□ -1.45
LIMA1-215ENST00000552823 ZNF302Q9NR11 478 aa6.02□□□□□ -1.45
LIMA1-215ENST00000552823 PDGFCQ9NRA1 345 aa6.02□□□□□ -1.45
LIMA1-215ENST00000552823 BTBD7Q9P203 1132 aa6.02□□□□□ -1.45
LIMA1-215ENST00000552823 CNOT8Q9UFF9 292 aaKnown RBP6.02□□□□□ -1.45
LIMA1-215ENST00000552823 LCMT1Q9UIC8 334 aa6.02□□□□□ -1.45
LIMA1-215ENST00000552823 PLAAQ9Y263 795 aa6.02□□□□□ -1.45
LIMA1-215ENST00000552823 LY75O60449 1722 aa6.02□□□□□ -1.45
LIMA1-215ENST00000552823 SPDYE16A6NNV3 312 aaPredicted RBP6.02□□□□□ -1.45
LIMA1-215ENST00000552823 AGPSO00116 658 aa6.02□□□□□ -1.45
LIMA1-215ENST00000552823 O00370 1275 aa6.02□□□□□ -1.45
LIMA1-215ENST00000552823 CLDN3O15551 220 aa6.02□□□□□ -1.45
LIMA1-215ENST00000552823 PSAPP07602 524 aa6.02□□□□□ -1.45
LIMA1-215ENST00000552823 CTNNA1P35221 906 aaKnown RBP6.02□□□□□ -1.45
LIMA1-215ENST00000552823 CLCN3P51790 818 aa6.02□□□□□ -1.45
LIMA1-215ENST00000552823 SEC24CP53992 1094 aa6.02□□□□□ -1.45
LIMA1-215ENST00000552823 KRT76Q01546 638 aa6.02□□□□□ -1.45
LIMA1-215ENST00000552823 NNTQ13423 1086 aa6.02□□□□□ -1.45
LIMA1-215ENST00000552823 Q3C1V9 767 aa6.02□□□□□ -1.45
LIMA1-215ENST00000552823 GNPTABQ3T906 1256 aa6.02□□□□□ -1.45
LIMA1-215ENST00000552823 ATP13A4Q4VNC1 1196 aa6.02□□□□□ -1.45
LIMA1-215ENST00000552823 COBLL1Q53SF7 1204 aa6.02□□□□□ -1.45
LIMA1-215ENST00000552823 RNF10Q8N5U6 811 aaKnown RBP6.02□□□□□ -1.45
LIMA1-215ENST00000552823 RNF149Q8NC42 400 aa6.02□□□□□ -1.45
LIMA1-215ENST00000552823 TMEM161BQ8NDZ6 487 aa6.02□□□□□ -1.45
LIMA1-215ENST00000552823 MGARPQ8TDB4 240 aa6.02□□□□□ -1.45
LIMA1-215ENST00000552823 ATP6V0A1Q93050 837 aa6.02□□□□□ -1.45
LIMA1-215ENST00000552823 C18orf8Q96DM3 657 aa6.02□□□□□ -1.45
LIMA1-215ENST00000552823 RNPC3Q96LT9 517 aaKnown RBP6.02□□□□□ -1.45
LIMA1-215ENST00000552823 APOL6Q9BWW8 343 aa6.02□□□□□ -1.45
LIMA1-215ENST00000552823 LRRC4CQ9HCJ2 640 aa6.02□□□□□ -1.45
LIMA1-215ENST00000552823 CYP26B1Q9NR63 512 aa6.02□□□□□ -1.45
LIMA1-215ENST00000552823 CYP39A1Q9NYL5 469 aa6.02□□□□□ -1.45
LIMA1-215ENST00000552823 ANAPC7Q9UJX3 599 aa6.02□□□□□ -1.45
LIMA1-215ENST00000552823 FBXL5Q9UKA1 691 aa6.02□□□□□ -1.45
LIMA1-215ENST00000552823 ZNF214Q9UL59 606 aaPredicted RBP6.02□□□□□ -1.45
LIMA1-215ENST00000552823 ODF2LQ9ULJ1 636 aa6.02□□□□□ -1.45
LIMA1-215ENST00000552823 CCDC66A2RUB6 948 aa6.01□□□□□ -1.45
LIMA1-215ENST00000552823 ZNF233A6NK53 670 aa6.01□□□□□ -1.45
LIMA1-215ENST00000552823 PJA2O43164 708 aa6.01□□□□□ -1.45
LIMA1-215ENST00000552823 THAP12O43422 761 aa6.01□□□□□ -1.45
LIMA1-215ENST00000552823 PIAS1O75925 651 aa6.01□□□□□ -1.45
LIMA1-215ENST00000552823 LMNB1P20700 586 aa6.01□□□□□ -1.45
LIMA1-215ENST00000552823 GUCY2CP25092 1073 aa6.01□□□□□ -1.45
LIMA1-215ENST00000552823 DYNLT1P63172 113 aa6.01□□□□□ -1.45
LIMA1-215ENST00000552823 PLCB3Q01970 1234 aa6.01□□□□□ -1.45
LIMA1-215ENST00000552823 PAK2Q13177 524 aa6.01□□□□□ -1.45
LIMA1-215ENST00000552823 EMC2Q15006 297 aa6.01□□□□□ -1.45
LIMA1-215ENST00000552823 STXBP2Q15833 593 aa6.01□□□□□ -1.45
LIMA1-215ENST00000552823 IFI16Q16666 785 aaKnown RBP6.01□□□□□ -1.45
LIMA1-215ENST00000552823 KRT71Q3SY84 523 aa6.01□□□□□ -1.45
LIMA1-215ENST00000552823 WDR44Q5JSH3 913 aa6.01□□□□□ -1.45
LIMA1-215ENST00000552823 UBAP2Q5T6F2 1119 aaKnown RBP6.01□□□□□ -1.45
LIMA1-215ENST00000552823 OR5B17Q8NGF7 314 aa6.01□□□□□ -1.45
LIMA1-215ENST00000552823 LMBR1Q8WVP7 490 aa6.01□□□□□ -1.45
LIMA1-215ENST00000552823 SLC7A3Q8WY07 619 aa6.01□□□□□ -1.45
LIMA1-215ENST00000552823 KLRG1Q96E93 195 aa6.01□□□□□ -1.45
LIMA1-215ENST00000552823 CYFIP2Q96F07 1278 aa6.01□□□□□ -1.45
LIMA1-215ENST00000552823 SELENOSQ9BQE4 189 aa6.01□□□□□ -1.45
LIMA1-215ENST00000552823 EDEM3Q9BZQ6 932 aa6.01□□□□□ -1.45
LIMA1-215ENST00000552823 EFCC1Q9HA90 598 aa6.01□□□□□ -1.45
LIMA1-215ENST00000552823 RAB20Q9NX57 234 aa6.01□□□□□ -1.45
LIMA1-215ENST00000552823 AGO2Q9UKV8 859 aaKnown RBP6.01□□□□□ -1.45
LIMA1-215ENST00000552823 EIF3DO15371 548 aaKnown RBP eCLIP6.01□□□□□ -1.45
LIMA1-215ENST00000552823 SLC16A3O15427 465 aaKnown RBP6.01□□□□□ -1.45
LIMA1-215ENST00000552823 TBC1D12O60347 775 aa6.01□□□□□ -1.45
LIMA1-215ENST00000552823 HLA-DRAP01903 254 aa6.01□□□□□ -1.45
LIMA1-215ENST00000552823 RAP1GAPP47736 663 aa6.01□□□□□ -1.45
LIMA1-215ENST00000552823 PDE6CP51160 858 aa6.01□□□□□ -1.45
LIMA1-215ENST00000552823 PPP1R7Q15435 360 aa6.01□□□□□ -1.45
LIMA1-215ENST00000552823 SMAD1Q15797 465 aaKnown RBP6.01□□□□□ -1.45
LIMA1-215ENST00000552823 HSDL1Q3SXM5 330 aa6.01□□□□□ -1.45
LIMA1-215ENST00000552823 BRDTQ58F21 947 aaPredicted RBP6.01□□□□□ -1.45
LIMA1-215ENST00000552823 C1orf220Q5T0J3 134 aa6.01□□□□□ -1.45
LIMA1-215ENST00000552823 KRT39Q6A163 491 aa6.01□□□□□ -1.45
LIMA1-215ENST00000552823 CHADLQ6NUI6 762 aa6.01□□□□□ -1.45
LIMA1-215ENST00000552823 SLC39A4Q6P5W5 647 aa6.01□□□□□ -1.45
LIMA1-215ENST00000552823 NT5DC3Q86UY8 548 aa6.01□□□□□ -1.45
LIMA1-215ENST00000552823 MMGT1Q8N4V1 131 aa6.01□□□□□ -1.45
LIMA1-215ENST00000552823 ZNF564Q8TBZ8 553 aaPredicted RBP6.01□□□□□ -1.45
LIMA1-215ENST00000552823 MDM1Q8TC05 714 aa6.01□□□□□ -1.45
LIMA1-215ENST00000552823 FAM71BQ8TC56 605 aa6.01□□□□□ -1.45
LIMA1-215ENST00000552823 PARD3BQ8TEW8 1205 aa6.01□□□□□ -1.45
LIMA1-215ENST00000552823 LRRN4Q8WUT4 740 aa6.01□□□□□ -1.45
LIMA1-215ENST00000552823 BORCS6Q96GS4 357 aa6.01□□□□□ -1.45
LIMA1-215ENST00000552823 INPP4AQ96PE3 977 aaPredicted RBP6.01□□□□□ -1.45
LIMA1-215ENST00000552823 MTFR1LQ9H019 292 aa6.01□□□□□ -1.45
LIMA1-215ENST00000552823 ATP6V0A4Q9HBG4 840 aa6.01□□□□□ -1.45
LIMA1-215ENST00000552823 EXOC7Q9UPT5 735 aa6.01□□□□□ -1.45
LIMA1-215ENST00000552823 AFG3L2Q9Y4W6 797 aa6.01□□□□□ -1.45
LIMA1-215ENST00000552823 BZW2Q9Y6E2 419 aaKnown RBP6.01□□□□□ -1.45
LIMA1-215ENST00000552823 PFASO15067 1338 aa6.01□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms