RNA–Protein interactions for RNA: ENST00000552440.5

USP44-208, Transcript of ubiquitin specific peptidase 44, human

TSL 5 BASIC

Gene USP44, Length 1,818 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP44-208	ENST00000552440	DMRT3	Q9NQL9	472 aa		4.8	□□□□□ -1.64
USP44-208	ENST00000552440	SPTLC3	Q9NUV7	552 aa		4.8	□□□□□ -1.64
USP44-208	ENST00000552440	NSMCE4A	Q9NXX6	385 aa		4.8	□□□□□ -1.64
USP44-208	ENST00000552440	GGA3	Q9NZ52	723 aa		4.8	□□□□□ -1.64
USP44-208	ENST00000552440	KLHL14	Q9P2G3	628 aa		4.8	□□□□□ -1.64
USP44-208	ENST00000552440	SEL1L	Q9UBV2	794 aa		4.8	□□□□□ -1.64
USP44-208	ENST00000552440	STAP2	Q9UGK3	403 aa		4.8	□□□□□ -1.64
USP44-208	ENST00000552440	GPR34	Q9UPC5	381 aa		4.8	□□□□□ -1.64
USP44-208	ENST00000552440	GPRASP1	Q5JY77	1395 aa		4.79	□□□□□ -1.64
USP44-208	ENST00000552440		A0A1W2PQJ5	194 aa		4.79	□□□□□ -1.64
USP44-208	ENST00000552440	DNTT	P04053	509 aa		4.79	□□□□□ -1.64
USP44-208	ENST00000552440	APP	P05067	770 aa		4.79	□□□□□ -1.64
USP44-208	ENST00000552440	CKM	P06732	381 aa		4.79	□□□□□ -1.64
USP44-208	ENST00000552440	MTHFD1	P11586	935 aa	Known RBP	4.79	□□□□□ -1.64
USP44-208	ENST00000552440	PEX2	P28328	305 aa		4.79	□□□□□ -1.64
USP44-208	ENST00000552440	MAPKAPK2	P49137	400 aa		4.79	□□□□□ -1.64
USP44-208	ENST00000552440	NAP1L1	P55209	391 aa	Known RBP	4.79	□□□□□ -1.64
USP44-208	ENST00000552440	GPR85	P60893	370 aa		4.79	□□□□□ -1.64
USP44-208	ENST00000552440	OCRL	Q01968	901 aa		4.79	□□□□□ -1.64
USP44-208	ENST00000552440	TTC31	Q49AM3	519 aa	Predicted RBP	4.79	□□□□□ -1.64
USP44-208	ENST00000552440	IZUMO3	Q5VZ72	239 aa		4.79	□□□□□ -1.64
USP44-208	ENST00000552440	CYP2R1	Q6VVX0	501 aa		4.79	□□□□□ -1.64
USP44-208	ENST00000552440	TMC6	Q7Z403	805 aa		4.79	□□□□□ -1.64
USP44-208	ENST00000552440	SLCO6A1	Q86UG4	719 aa		4.79	□□□□□ -1.64
USP44-208	ENST00000552440	FAM129C	Q86XR2	697 aa		4.79	□□□□□ -1.64
USP44-208	ENST00000552440	ERC1	Q8IUD2	1116 aa		4.79	□□□□□ -1.64
USP44-208	ENST00000552440	TMTC1	Q8IUR5	882 aa		4.79	□□□□□ -1.64
USP44-208	ENST00000552440	TEX11	Q8IYF3	940 aa		4.79	□□□□□ -1.64
USP44-208	ENST00000552440	PUM2	Q8TB72	1066 aa	Known RBP eCLIP	4.79	□□□□□ -1.64
USP44-208	ENST00000552440	NT5C1B	Q96P26	610 aa		4.79	□□□□□ -1.64
USP44-208	ENST00000552440	KRTAP9-3	Q9BYQ3	159 aa		4.79	□□□□□ -1.64
USP44-208	ENST00000552440	GTPBP4	Q9BZE4	634 aa	Known RBP	4.79	□□□□□ -1.64
USP44-208	ENST00000552440	NUP62CL	Q9H1M0	184 aa		4.79	□□□□□ -1.64
USP44-208	ENST00000552440	GPRC5C	Q9NQ84	441 aa		4.79	□□□□□ -1.64
USP44-208	ENST00000552440	WASH6P	Q9NQA3	447 aa		4.79	□□□□□ -1.64
USP44-208	ENST00000552440	GPR27	Q9NS67	375 aa		4.79	□□□□□ -1.64
USP44-208	ENST00000552440	ARGLU1	Q9NWB6	273 aa	Predicted RBP	4.79	□□□□□ -1.64
USP44-208	ENST00000552440	B4GALT6	Q9UBX8	382 aa		4.79	□□□□□ -1.64
USP44-208	ENST00000552440	MINPP1	Q9UNW1	487 aa		4.79	□□□□□ -1.64
USP44-208	ENST00000552440	COQ6	Q9Y2Z9	468 aa		4.79	□□□□□ -1.64
USP44-208	ENST00000552440	STXBP3	O00186	592 aa		4.79	□□□□□ -1.64
USP44-208	ENST00000552440	MASP2	O00187	686 aa		4.79	□□□□□ -1.64
USP44-208	ENST00000552440	CPLX1	O14810	134 aa		4.79	□□□□□ -1.64
USP44-208	ENST00000552440	P4HA2	O15460	535 aa		4.79	□□□□□ -1.64
USP44-208	ENST00000552440	AHCYL1	O43865	530 aa		4.79	□□□□□ -1.64
USP44-208	ENST00000552440	DKC1	O60832	514 aa	Known RBP eCLIP	4.79	□□□□□ -1.64
USP44-208	ENST00000552440	TUSC2	O75896	110 aa		4.79	□□□□□ -1.64
USP44-208	ENST00000552440	CSTB	P04080	98 aa	Known RBP	4.79	□□□□□ -1.64
USP44-208	ENST00000552440	VAV1	P15498	845 aa		4.79	□□□□□ -1.64
USP44-208	ENST00000552440	PIK3CB	P42338	1070 aa		4.79	□□□□□ -1.64
USP44-208	ENST00000552440	CTSK	P43235	329 aa		4.79	□□□□□ -1.64
USP44-208	ENST00000552440	GALK1	P51570	392 aa		4.79	□□□□□ -1.64
USP44-208	ENST00000552440	MECP2	P51608	486 aa	Known RBP	4.79	□□□□□ -1.64
USP44-208	ENST00000552440	CDR1	P51861	262 aa		4.79	□□□□□ -1.64
USP44-208	ENST00000552440	ZNF132	P52740	706 aa		4.79	□□□□□ -1.64
USP44-208	ENST00000552440	EPHB3	P54753	998 aa		4.79	□□□□□ -1.64
USP44-208	ENST00000552440	PKN2	Q16513	984 aa	Known RBP	4.79	□□□□□ -1.64
USP44-208	ENST00000552440	ZC3H14	Q6PJT7	736 aa	Known RBP	4.79	□□□□□ -1.64
USP44-208	ENST00000552440	RFX8	Q6ZV50	586 aa		4.79	□□□□□ -1.64
USP44-208	ENST00000552440	RASGRP2	Q7LDG7	609 aa		4.79	□□□□□ -1.64
USP44-208	ENST00000552440	MILR1	Q7Z6M3	343 aa		4.79	□□□□□ -1.64
USP44-208	ENST00000552440	DAAM2	Q86T65	1068 aa		4.79	□□□□□ -1.64
USP44-208	ENST00000552440	CCDC103	Q8IW40	242 aa		4.79	□□□□□ -1.64
USP44-208	ENST00000552440	ZC3H7A	Q8IWR0	971 aa	Known RBP	4.79	□□□□□ -1.64
USP44-208	ENST00000552440	GRAMD1C	Q8IYS0	662 aa		4.79	□□□□□ -1.64
USP44-208	ENST00000552440	NAT16	Q8N8M0	369 aa		4.79	□□□□□ -1.64
USP44-208	ENST00000552440	NUP43	Q8NFH3	380 aa		4.79	□□□□□ -1.64
USP44-208	ENST00000552440	OR8H1	Q8NGG4	311 aa		4.79	□□□□□ -1.64
USP44-208	ENST00000552440	PCDH19	Q8TAB3	1148 aa		4.79	□□□□□ -1.64
USP44-208	ENST00000552440	PPP1R35	Q8TAP8	253 aa		4.79	□□□□□ -1.64
USP44-208	ENST00000552440	TRAPPC12	Q8WVT3	735 aa		4.79	□□□□□ -1.64
USP44-208	ENST00000552440	CENPT	Q96BT3	561 aa		4.79	□□□□□ -1.64
USP44-208	ENST00000552440	PWWP2A	Q96N64	755 aa		4.79	□□□□□ -1.64
USP44-208	ENST00000552440	ASB2	Q96Q27	587 aa		4.79	□□□□□ -1.64
USP44-208	ENST00000552440	TREX2	Q9BQ50	279 aa	Predicted RBP	4.79	□□□□□ -1.64
USP44-208	ENST00000552440	TMEM120A	Q9BXJ8	343 aa		4.79	□□□□□ -1.64
USP44-208	ENST00000552440	CELF4	Q9BZC1	486 aa	Known RBP	4.79	□□□□□ -1.64
USP44-208	ENST00000552440	THG1L	Q9NWX6	298 aa	Known RBP	4.79	□□□□□ -1.64
USP44-208	ENST00000552440	CEP72	Q9P209	647 aa		4.79	□□□□□ -1.64
USP44-208	ENST00000552440	XPO7	Q9UIA9	1087 aa	Known RBP	4.79	□□□□□ -1.64
USP44-208	ENST00000552440	TMEFF2	Q9UIK5	374 aa	Predicted RBP	4.79	□□□□□ -1.64
USP44-208	ENST00000552440	PA2G4	Q9UQ80	394 aa	Known RBP	4.79	□□□□□ -1.64
USP44-208	ENST00000552440	ZKSCAN5	Q9Y2L8	839 aa		4.79	□□□□□ -1.64
USP44-208	ENST00000552440	AURKA	O14965	403 aa		4.78	□□□□□ -1.64
USP44-208	ENST00000552440	MSC	O60682	206 aa		4.78	□□□□□ -1.64
USP44-208	ENST00000552440	H2AFY	O75367	372 aa	Known RBP	4.78	□□□□□ -1.64
USP44-208	ENST00000552440	POU2F2	P09086	479 aa		4.78	□□□□□ -1.64
USP44-208	ENST00000552440	ATP1A3	P13637	1013 aa		4.78	□□□□□ -1.64
USP44-208	ENST00000552440	ATP2A2	P16615	1042 aa	Known RBP	4.78	□□□□□ -1.64
USP44-208	ENST00000552440	ATF7	P17544	494 aa	Predicted RBP	4.78	□□□□□ -1.64
USP44-208	ENST00000552440	MUT	P22033	750 aa		4.78	□□□□□ -1.64
USP44-208	ENST00000552440	GRK2	P25098	689 aa		4.78	□□□□□ -1.64
USP44-208	ENST00000552440	DCAF7	P61962	342 aa		4.78	□□□□□ -1.64
USP44-208	ENST00000552440	POU4F1	Q01851	419 aa		4.78	□□□□□ -1.64
USP44-208	ENST00000552440	SPARCL1	Q14515	664 aa		4.78	□□□□□ -1.64
USP44-208	ENST00000552440	ACAP2	Q15057	778 aa		4.78	□□□□□ -1.64
USP44-208	ENST00000552440	PTPN14	Q15678	1187 aa		4.78	□□□□□ -1.64
USP44-208	ENST00000552440	CLUL1	Q15846	466 aa		4.78	□□□□□ -1.64
USP44-208	ENST00000552440	DDB1	Q16531	1140 aa		4.78	□□□□□ -1.64
USP44-208	ENST00000552440	SPATS1	Q496A3	300 aa		4.78	□□□□□ -1.64

Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms