RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, human

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LIMA1-208	ENST00000551691	PCDHA2	Q9Y5H9	948 aa		4.64	□□□□□ -1.67
LIMA1-208	ENST00000551691	FLT4	P35916	1363 aa		4.64	□□□□□ -1.67
LIMA1-208	ENST00000551691	CDH23	Q9H251	3354 aa		4.64	□□□□□ -1.67
LIMA1-208	ENST00000551691	ARVCF	O00192	962 aa		4.63	□□□□□ -1.67
LIMA1-208	ENST00000551691	PSMD14	O00487	310 aa		4.63	□□□□□ -1.67
LIMA1-208	ENST00000551691	AURKA	O14965	403 aa		4.63	□□□□□ -1.67
LIMA1-208	ENST00000551691	FOS	P01100	380 aa	Predicted RBP	4.63	□□□□□ -1.67
LIMA1-208	ENST00000551691	SOD2	P04179	222 aa		4.63	□□□□□ -1.67
LIMA1-208	ENST00000551691	GSTM1	P09488	218 aa		4.63	□□□□□ -1.67
LIMA1-208	ENST00000551691	IFNGR1	P15260	489 aa		4.63	□□□□□ -1.67
LIMA1-208	ENST00000551691	GRK2	P25098	689 aa		4.63	□□□□□ -1.67
LIMA1-208	ENST00000551691	CYP2C19	P33261	490 aa		4.63	□□□□□ -1.67
LIMA1-208	ENST00000551691	GRK3	P35626	688 aa		4.63	□□□□□ -1.67
LIMA1-208	ENST00000551691	CDR1	P51861	262 aa		4.63	□□□□□ -1.67
LIMA1-208	ENST00000551691	PCBP3	P57721	371 aa	Known RBP	4.63	□□□□□ -1.67
LIMA1-208	ENST00000551691	DSG1	Q02413	1049 aa		4.63	□□□□□ -1.67
LIMA1-208	ENST00000551691	LAPTM5	Q13571	262 aa		4.63	□□□□□ -1.67
LIMA1-208	ENST00000551691	SLC9C1	Q4G0N8	1177 aa		4.63	□□□□□ -1.67
LIMA1-208	ENST00000551691	LBX2	Q6XYB7	198 aa		4.63	□□□□□ -1.67
LIMA1-208	ENST00000551691	RNF111	Q6ZNA4	994 aa		4.63	□□□□□ -1.67
LIMA1-208	ENST00000551691	TTLL7	Q6ZT98	887 aa		4.63	□□□□□ -1.67
LIMA1-208	ENST00000551691	ZNF655	Q8N720	491 aa	Predicted RBP	4.63	□□□□□ -1.67
LIMA1-208	ENST00000551691	ENOX1	Q8TC92	643 aa	Known RBP	4.63	□□□□□ -1.67
LIMA1-208	ENST00000551691	COPS5	Q92905	334 aa		4.63	□□□□□ -1.67
LIMA1-208	ENST00000551691	SLC5A5	Q92911	643 aa		4.63	□□□□□ -1.67
LIMA1-208	ENST00000551691	C1orf159	Q96HA4	380 aa		4.63	□□□□□ -1.67
LIMA1-208	ENST00000551691	ORAI3	Q9BRQ5	295 aa		4.63	□□□□□ -1.67
LIMA1-208	ENST00000551691	CDADC1	Q9BWV3	514 aa		4.63	□□□□□ -1.67
LIMA1-208	ENST00000551691	RHOBTB2	Q9BYZ6	727 aa		4.63	□□□□□ -1.67
LIMA1-208	ENST00000551691	XYLT2	Q9H1B5	865 aa		4.63	□□□□□ -1.67
LIMA1-208	ENST00000551691	ADAM7	Q9H2U9	754 aa		4.63	□□□□□ -1.67
LIMA1-208	ENST00000551691	SPTLC3	Q9NUV7	552 aa		4.63	□□□□□ -1.67
LIMA1-208	ENST00000551691	C14orf119	Q9NWQ9	140 aa		4.63	□□□□□ -1.67
LIMA1-208	ENST00000551691	GGA3	Q9NZ52	723 aa		4.63	□□□□□ -1.67
LIMA1-208	ENST00000551691	B4GALT6	Q9UBX8	382 aa		4.63	□□□□□ -1.67
LIMA1-208	ENST00000551691	USP25	Q9UHP3	1055 aa		4.63	□□□□□ -1.67
LIMA1-208	ENST00000551691	PNMA8B	Q9ULN7	279 aa	Predicted RBP	4.63	□□□□□ -1.67
LIMA1-208	ENST00000551691	ZNF281	Q9Y2X9	895 aa		4.63	□□□□□ -1.67
LIMA1-208	ENST00000551691	NOC2L	Q9Y3T9	749 aa	Known RBP	4.63	□□□□□ -1.67
LIMA1-208	ENST00000551691	TNKS	O95271	1327 aa		4.63	□□□□□ -1.67
LIMA1-208	ENST00000551691	RPTOR	Q8N122	1335 aa		4.63	□□□□□ -1.67
LIMA1-208	ENST00000551691	BCOR	Q6W2J9	1755 aa		4.63	□□□□□ -1.67
LIMA1-208	ENST00000551691	NCAPD2	Q15021	1401 aa		4.63	□□□□□ -1.67
LIMA1-208	ENST00000551691	ERC2	O15083	957 aa		4.62	□□□□□ -1.67
LIMA1-208	ENST00000551691	NRDC	O43847	1150 aa		4.62	□□□□□ -1.67
LIMA1-208	ENST00000551691	SH3BP5	O60239	455 aa		4.62	□□□□□ -1.67
LIMA1-208	ENST00000551691	ABLIM3	O94929	683 aa		4.62	□□□□□ -1.67
LIMA1-208	ENST00000551691	STARD3NL	O95772	234 aa		4.62	□□□□□ -1.67
LIMA1-208	ENST00000551691	CAPNS1	P04632	268 aa		4.62	□□□□□ -1.67
LIMA1-208	ENST00000551691	KRT15	P19012	456 aa		4.62	□□□□□ -1.67
LIMA1-208	ENST00000551691	ENDOU	P21128	410 aa	Known RBP	4.62	□□□□□ -1.67
LIMA1-208	ENST00000551691	KRTAP10-2	P60368	255 aa		4.62	□□□□□ -1.67
LIMA1-208	ENST00000551691	PURA	Q00577	322 aa	Known RBP	4.62	□□□□□ -1.67
LIMA1-208	ENST00000551691	CRHR2	Q13324	411 aa		4.62	□□□□□ -1.67
LIMA1-208	ENST00000551691	TNIP1	Q15025	636 aa		4.62	□□□□□ -1.67
LIMA1-208	ENST00000551691	HLF	Q16534	295 aa		4.62	□□□□□ -1.67
LIMA1-208	ENST00000551691	ABHD17C	Q6PCB6	329 aa		4.62	□□□□□ -1.67
LIMA1-208	ENST00000551691	UBE2Q1	Q7Z7E8	422 aa		4.62	□□□□□ -1.67
LIMA1-208	ENST00000551691	TPH2	Q8IWU9	490 aa		4.62	□□□□□ -1.67
LIMA1-208	ENST00000551691	FRS2	Q8WU20	508 aa		4.62	□□□□□ -1.67
LIMA1-208	ENST00000551691	TTC17	Q96AE7	1141 aa		4.62	□□□□□ -1.67
LIMA1-208	ENST00000551691	DACT3	Q96B18	629 aa	Predicted RBP	4.62	□□□□□ -1.67
LIMA1-208	ENST00000551691	HSPBAP1	Q96EW2	488 aa		4.62	□□□□□ -1.67
LIMA1-208	ENST00000551691	KCNJ15	Q99712	375 aa		4.62	□□□□□ -1.67
LIMA1-208	ENST00000551691	GDF15	Q99988	308 aa		4.62	□□□□□ -1.67
LIMA1-208	ENST00000551691	ARHGAP39	Q9C0H5	1083 aa		4.62	□□□□□ -1.67
LIMA1-208	ENST00000551691	OBP2A	Q9NY56	170 aa		4.62	□□□□□ -1.67
LIMA1-208	ENST00000551691	POLK	Q9UBT6	870 aa		4.62	□□□□□ -1.67
LIMA1-208	ENST00000551691	SAP30BP	Q9UHR5	308 aa	Known RBP	4.62	□□□□□ -1.67
LIMA1-208	ENST00000551691	ZMYND8	Q9ULU4	1186 aa	Predicted RBP	4.62	□□□□□ -1.67
LIMA1-208	ENST00000551691	NIP7	Q9Y221	180 aa	Known RBP eCLIP	4.62	□□□□□ -1.67
LIMA1-208	ENST00000551691	NR2E3	Q9Y5X4	410 aa		4.62	□□□□□ -1.67
LIMA1-208	ENST00000551691	IRS2	Q9Y4H2	1338 aa		4.62	□□□□□ -1.67
LIMA1-208	ENST00000551691	RBBP6	Q7Z6E9	1792 aa	Known RBP	4.62	□□□□□ -1.67
LIMA1-208	ENST00000551691	ARFGEF2	Q9Y6D5	1785 aa		4.62	□□□□□ -1.67
LIMA1-208	ENST00000551691		A0A1W2PPC1	479 aa		4.61	□□□□□ -1.67
LIMA1-208	ENST00000551691	GOLGA8A	A7E2F4	631 aa		4.61	□□□□□ -1.67
LIMA1-208	ENST00000551691	GOLGA8B	A8MQT2	603 aa		4.61	□□□□□ -1.67
LIMA1-208	ENST00000551691	NUDT19	A8MXV4	375 aa		4.61	□□□□□ -1.67
LIMA1-208	ENST00000551691	N4BP3	O15049	544 aa		4.61	□□□□□ -1.67
LIMA1-208	ENST00000551691	KCNQ3	O43525	872 aa		4.61	□□□□□ -1.67
LIMA1-208	ENST00000551691	GNAT1	P11488	350 aa		4.61	□□□□□ -1.67
LIMA1-208	ENST00000551691	ATP2A2	P16615	1042 aa	Known RBP	4.61	□□□□□ -1.67
LIMA1-208	ENST00000551691	SYN1	P17600	705 aa		4.61	□□□□□ -1.67
LIMA1-208	ENST00000551691	LSP1	P33241	339 aa		4.61	□□□□□ -1.67
LIMA1-208	ENST00000551691	GTF2A2	P52657	109 aa		4.61	□□□□□ -1.67
LIMA1-208	ENST00000551691	SCAND1	P57086	179 aa		4.61	□□□□□ -1.67
LIMA1-208	ENST00000551691	RTP1	P59025	263 aa		4.61	□□□□□ -1.67
LIMA1-208	ENST00000551691	RPL11	P62913	178 aa	Known RBP	4.61	□□□□□ -1.67
LIMA1-208	ENST00000551691	SP3	Q02447	781 aa		4.61	□□□□□ -1.67
LIMA1-208	ENST00000551691	C1orf141	Q5JVX7	400 aa		4.61	□□□□□ -1.67
LIMA1-208	ENST00000551691	RCSD1	Q6JBY9	416 aa		4.61	□□□□□ -1.67
LIMA1-208	ENST00000551691	TMC6	Q7Z403	805 aa		4.61	□□□□□ -1.67
LIMA1-208	ENST00000551691	APBB1IP	Q7Z5R6	666 aa	Predicted RBP	4.61	□□□□□ -1.67
LIMA1-208	ENST00000551691	TMEFF1	Q8IYR6	380 aa		4.61	□□□□□ -1.67
LIMA1-208	ENST00000551691	EFHB	Q8N7U6	833 aa		4.61	□□□□□ -1.67
LIMA1-208	ENST00000551691	DAGLB	Q8NCG7	672 aa		4.61	□□□□□ -1.67
LIMA1-208	ENST00000551691	KREMEN2	Q8NCW0	462 aa		4.61	□□□□□ -1.67
LIMA1-208	ENST00000551691	PCDH19	Q8TAB3	1148 aa		4.61	□□□□□ -1.67
LIMA1-208	ENST00000551691	NPLOC4	Q8TAT6	608 aa		4.61	□□□□□ -1.67

Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms