RNA–Protein interactions for RNA: ENST00000550611.1

LIMA1-206, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-206ENST00000550611 ADAT2Q7Z6V5 191 aaKnown RBP4.54□□□□□ -1.68
LIMA1-206ENST00000550611 RALYLQ86SE5 291 aaKnown RBP4.54□□□□□ -1.68
LIMA1-206ENST00000550611 APOBEC3FQ8IUX4 373 aaKnown RBP4.54□□□□□ -1.68
LIMA1-206ENST00000550611 FAM43AQ8N2R8 423 aa4.54□□□□□ -1.68
LIMA1-206ENST00000550611 CERS5Q8N5B7 392 aa4.54□□□□□ -1.68
LIMA1-206ENST00000550611 EXTL1Q92935 676 aa4.54□□□□□ -1.68
LIMA1-206ENST00000550611 DEFB118Q96PH6 123 aa4.54□□□□□ -1.68
LIMA1-206ENST00000550611 LMF1Q96S06 567 aa4.54□□□□□ -1.68
LIMA1-206ENST00000550611 MYD88Q99836 296 aa4.54□□□□□ -1.68
LIMA1-206ENST00000550611 CWC25Q9NXE8 425 aaPredicted RBP4.54□□□□□ -1.68
LIMA1-206ENST00000550611 HSPBP1Q9NZL4 362 aa4.54□□□□□ -1.68
LIMA1-206ENST00000550611 RIPOR2Q9Y4F9 1068 aa4.54□□□□□ -1.68
LIMA1-206ENST00000550611 PCDHAC2Q9Y5I4 1007 aa4.54□□□□□ -1.68
LIMA1-206ENST00000550611 PPP2R3BQ9Y5P8 575 aa4.54□□□□□ -1.68
LIMA1-206ENST00000550611 SLC12A7Q9Y666 1083 aa4.54□□□□□ -1.68
LIMA1-206ENST00000550611 ALPK3Q96L96 1907 aa4.54□□□□□ -1.68
LIMA1-206ENST00000550611 SSC5DA1L4H1 1573 aa4.53□□□□□ -1.68
LIMA1-206ENST00000550611 LAMB2P55268 1798 aa4.53□□□□□ -1.68
LIMA1-206ENST00000550611 ZNF804BA4D1E1 1349 aa4.53□□□□□ -1.68
LIMA1-206ENST00000550611 AOX1Q06278 1338 aa4.53□□□□□ -1.68
LIMA1-206ENST00000550611 TCF20Q9UGU0 1960 aaKnown RBP4.53□□□□□ -1.68
LIMA1-206ENST00000550611 DDX60Q8IY21 1712 aaKnown RBP4.53□□□□□ -1.68
LIMA1-206ENST00000550611 CHGBP05060 677 aa4.53□□□□□ -1.68
LIMA1-206ENST00000550611 CSF1RP07333 972 aa4.53□□□□□ -1.68
LIMA1-206ENST00000550611 FOSL2P15408 326 aa4.53□□□□□ -1.68
LIMA1-206ENST00000550611 KLRK1P26718 216 aa4.53□□□□□ -1.68
LIMA1-206ENST00000550611 CASP7P55210 303 aa4.53□□□□□ -1.68
LIMA1-206ENST00000550611 FKBP1AP62942 108 aaKnown RBP4.53□□□□□ -1.68
LIMA1-206ENST00000550611 LACTBP83111 547 aaPredicted RBP4.53□□□□□ -1.68
LIMA1-206ENST00000550611 SUPT20HL1Q3ZLR7 823 aa4.53□□□□□ -1.68
LIMA1-206ENST00000550611 AGBL4Q5VU57 503 aa4.53□□□□□ -1.68
LIMA1-206ENST00000550611 LRCH2Q5VUJ6 765 aa4.53□□□□□ -1.68
LIMA1-206ENST00000550611 OTUD7BQ6GQQ9 843 aa4.53□□□□□ -1.68
LIMA1-206ENST00000550611 Q6ZUG5 572 aa4.53□□□□□ -1.68
LIMA1-206ENST00000550611 GIMAP8Q8ND71 665 aaPredicted RBP4.53□□□□□ -1.68
LIMA1-206ENST00000550611 BRI3BPQ8WY22 251 aa4.53□□□□□ -1.68
LIMA1-206ENST00000550611 RUNDC1Q96C34 613 aa4.53□□□□□ -1.68
LIMA1-206ENST00000550611 ZG16BQ96DA0 208 aa4.53□□□□□ -1.68
LIMA1-206ENST00000550611 PRMT6Q96LA8 375 aaPredicted RBP4.53□□□□□ -1.68
LIMA1-206ENST00000550611 FGD4Q96M96 766 aa4.53□□□□□ -1.68
LIMA1-206ENST00000550611 UHRF1Q96T88 793 aaPredicted RBP4.53□□□□□ -1.68
LIMA1-206ENST00000550611 CDC5LQ99459 802 aaKnown RBP4.53□□□□□ -1.68
LIMA1-206ENST00000550611 P2RX7Q99572 595 aaKnown RBP4.53□□□□□ -1.68
LIMA1-206ENST00000550611 PLA2G12BQ9BX93 195 aa4.53□□□□□ -1.68
LIMA1-206ENST00000550611 GREM2Q9H772 168 aa4.53□□□□□ -1.68
LIMA1-206ENST00000550611 CD209Q9NNX6 404 aa4.53□□□□□ -1.68
LIMA1-206ENST00000550611 DLL4Q9NR61 685 aa4.53□□□□□ -1.68
LIMA1-206ENST00000550611 GABRQQ9UN88 632 aa4.53□□□□□ -1.68
LIMA1-206ENST00000550611 COL1A1P02452 1464 aaPredicted RBP4.52□□□□□ -1.69
LIMA1-206ENST00000550611 HGSO14964 777 aaPredicted RBP4.52□□□□□ -1.69
LIMA1-206ENST00000550611 KLHL18O94889 574 aa4.52□□□□□ -1.69
LIMA1-206ENST00000550611 LRG1P02750 347 aa4.52□□□□□ -1.69
LIMA1-206ENST00000550611 IL1R1P14778 569 aa4.52□□□□□ -1.69
LIMA1-206ENST00000550611 PSMC4P43686 418 aa4.52□□□□□ -1.69
LIMA1-206ENST00000550611 RPL11P62913 178 aaKnown RBP4.52□□□□□ -1.69
LIMA1-206ENST00000550611 SLC7A5Q01650 507 aa4.52□□□□□ -1.69
LIMA1-206ENST00000550611 ARHGEF6Q15052 776 aa4.52□□□□□ -1.69
LIMA1-206ENST00000550611 DLGAP5Q15398 846 aa4.52□□□□□ -1.69
LIMA1-206ENST00000550611 INF2Q27J81 1249 aa4.52□□□□□ -1.69
LIMA1-206ENST00000550611 IQCEQ6IPM2 695 aa4.52□□□□□ -1.69
LIMA1-206ENST00000550611 KSR2Q6VAB6 950 aa4.52□□□□□ -1.69
LIMA1-206ENST00000550611 LDLRAD3Q86YD5 345 aa4.52□□□□□ -1.69
LIMA1-206ENST00000550611 ANKRD13AQ8IZ07 590 aa4.52□□□□□ -1.69
LIMA1-206ENST00000550611 C8orf58Q8NAV2 365 aa4.52□□□□□ -1.69
LIMA1-206ENST00000550611 NUDT10Q8NFP7 164 aa4.52□□□□□ -1.69
LIMA1-206ENST00000550611 RAET1EQ8TD07 263 aa4.52□□□□□ -1.69
LIMA1-206ENST00000550611 VOPP1Q96AW1 172 aa4.52□□□□□ -1.69
LIMA1-206ENST00000550611 NUDT11Q96G61 164 aa4.52□□□□□ -1.69
LIMA1-206ENST00000550611 AJUBAQ96IF1 538 aa4.52□□□□□ -1.69
LIMA1-206ENST00000550611 ASB2Q96Q27 587 aa4.52□□□□□ -1.69
LIMA1-206ENST00000550611 ANKRD2Q9GZV1 360 aa4.52□□□□□ -1.69
LIMA1-206ENST00000550611 GPRC5CQ9NQ84 441 aa4.52□□□□□ -1.69
LIMA1-206ENST00000550611 CPA4Q9UI42 421 aa4.52□□□□□ -1.69
LIMA1-206ENST00000550611 WASF3Q9UPY6 502 aa4.52□□□□□ -1.69
LIMA1-206ENST00000550611 LAS1LQ9Y4W2 734 aaKnown RBP4.52□□□□□ -1.69
LIMA1-206ENST00000550611 TIMM13Q9Y5L4 95 aaPredicted RBP4.52□□□□□ -1.69
LIMA1-206ENST00000550611 NCOR1O75376 2440 aa4.52□□□□□ -1.69
LIMA1-206ENST00000550611 TCRBV5S2A0A599 114 aa4.51□□□□□ -1.69
LIMA1-206ENST00000550611 PI4KAP2A4QPH2 592 aa4.51□□□□□ -1.69
LIMA1-206ENST00000550611 SNAP23O00161 211 aa4.51□□□□□ -1.69
LIMA1-206ENST00000550611 KRT37O76014 449 aa4.51□□□□□ -1.69
LIMA1-206ENST00000550611 FPR2P25090 351 aa4.51□□□□□ -1.69
LIMA1-206ENST00000550611 GTF2A2P52657 109 aa4.51□□□□□ -1.69
LIMA1-206ENST00000550611 DGCR2P98153 550 aa4.51□□□□□ -1.69
LIMA1-206ENST00000550611 PRKCZQ05513 592 aa4.51□□□□□ -1.69
LIMA1-206ENST00000550611 CHRNDQ07001 517 aa4.51□□□□□ -1.69
LIMA1-206ENST00000550611 SCRN1Q12765 414 aa4.51□□□□□ -1.69
LIMA1-206ENST00000550611 RASA3Q14644 834 aa4.51□□□□□ -1.69
LIMA1-206ENST00000550611 RALBP1Q15311 655 aa4.51□□□□□ -1.69
LIMA1-206ENST00000550611 CFAP100Q494V2 611 aa4.51□□□□□ -1.69
LIMA1-206ENST00000550611 FBXW10Q5XX13 1052 aa4.51□□□□□ -1.69
LIMA1-206ENST00000550611 NECAB2Q7Z6G3 386 aa4.51□□□□□ -1.69
LIMA1-206ENST00000550611 CCDC146Q8IYE0 955 aa4.51□□□□□ -1.69
LIMA1-206ENST00000550611 ZNF513Q8N8E2 541 aaPredicted RBP4.51□□□□□ -1.69
LIMA1-206ENST00000550611 PI4KAP1Q8N8J0 262 aa4.51□□□□□ -1.69
LIMA1-206ENST00000550611 TMEM87AQ8NBN3 555 aa4.51□□□□□ -1.69
LIMA1-206ENST00000550611 ARRDC4Q8NCT1 418 aa4.51□□□□□ -1.69
LIMA1-206ENST00000550611 NEU4Q8WWR8 484 aaPredicted RBP4.51□□□□□ -1.69
LIMA1-206ENST00000550611 OPTNQ96CV9 577 aa4.51□□□□□ -1.69
LIMA1-206ENST00000550611 C1QTNF1Q9BXJ1 281 aa4.51□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms