RNA–Protein interactions for RNA: ENST00000545694.1

SYNE1-239, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 526 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-239ENST00000545694 KRT86O43790 486 aa6.76□□□□□ -1.33
SYNE1-239ENST00000545694 BNIP3LO60238 219 aa6.76□□□□□ -1.33
SYNE1-239ENST00000545694 KIF5CO60282 957 aa6.76□□□□□ -1.33
SYNE1-239ENST00000545694 ATP9AO75110 1047 aa6.76□□□□□ -1.33
SYNE1-239ENST00000545694 GFPT2O94808 682 aa6.76□□□□□ -1.33
SYNE1-239ENST00000545694 PRPF6O94906 941 aaKnown RBP6.76□□□□□ -1.33
SYNE1-239ENST00000545694 NDUFA10O95299 355 aa6.76□□□□□ -1.33
SYNE1-239ENST00000545694 LCA5LO95447 670 aa6.76□□□□□ -1.33
SYNE1-239ENST00000545694 CCNE2O96020 404 aa6.76□□□□□ -1.33
SYNE1-239ENST00000545694 HOXC6P09630 235 aa6.76□□□□□ -1.33
SYNE1-239ENST00000545694 MYBP10242 640 aa6.76□□□□□ -1.33
SYNE1-239ENST00000545694 ERCC3P19447 782 aa6.76□□□□□ -1.33
SYNE1-239ENST00000545694 AMPD1P23109 780 aa6.76□□□□□ -1.33
SYNE1-239ENST00000545694 HOXD13P35453 343 aa6.76□□□□□ -1.33
SYNE1-239ENST00000545694 ACTR2P61160 394 aa6.76□□□□□ -1.33
SYNE1-239ENST00000545694 ERVK-24P63145 666 aa6.76□□□□□ -1.33
SYNE1-239ENST00000545694 USP4Q13107 963 aa6.76□□□□□ -1.33
SYNE1-239ENST00000545694 MAPK7Q13164 816 aa6.76□□□□□ -1.33
SYNE1-239ENST00000545694 MOGSQ13724 837 aa6.76□□□□□ -1.33
SYNE1-239ENST00000545694 SPA17Q15506 151 aa6.76□□□□□ -1.33
SYNE1-239ENST00000545694 ARHGAP29Q52LW3 1261 aa6.76□□□□□ -1.33
SYNE1-239ENST00000545694 EAPPQ56P03 285 aaPredicted RBP6.76□□□□□ -1.33
SYNE1-239ENST00000545694 OXLD1Q5BKU9 147 aa6.76□□□□□ -1.33
SYNE1-239ENST00000545694 XKR9Q5GH70 373 aa6.76□□□□□ -1.33
SYNE1-239ENST00000545694 EFHC2Q5JST6 749 aa6.76□□□□□ -1.33
SYNE1-239ENST00000545694 C10orf76Q5T2E6 689 aa6.76□□□□□ -1.33
SYNE1-239ENST00000545694 METTL7BQ6UX53 244 aa6.76□□□□□ -1.33
SYNE1-239ENST00000545694 GBP6Q6ZN66 633 aa6.76□□□□□ -1.33
SYNE1-239ENST00000545694 CACNA2D4Q7Z3S7 1137 aa6.76□□□□□ -1.33
SYNE1-239ENST00000545694 NELFCDQ8IXH7 590 aa6.76□□□□□ -1.33
SYNE1-239ENST00000545694 FAM186BQ8IYM0 893 aa6.76□□□□□ -1.33
SYNE1-239ENST00000545694 SYCP3Q8IZU3 236 aa6.76□□□□□ -1.33
SYNE1-239ENST00000545694 C17orf53Q8N3J3 647 aaPredicted RBP6.76□□□□□ -1.33
SYNE1-239ENST00000545694 PHTF2Q8N3S3 785 aa6.76□□□□□ -1.33
SYNE1-239ENST00000545694 MSL3Q8N5Y2 521 aaKnown RBP6.76□□□□□ -1.33
SYNE1-239ENST00000545694 C2orf69Q8N8R5 385 aa6.76□□□□□ -1.33
SYNE1-239ENST00000545694 GPRC5AQ8NFJ5 357 aa6.76□□□□□ -1.33
SYNE1-239ENST00000545694 CPLX3Q8WVH0 158 aa6.76□□□□□ -1.33
SYNE1-239ENST00000545694 SEPT1Q8WYJ6 367 aa6.76□□□□□ -1.33
SYNE1-239ENST00000545694 CEP170P1Q96L14 293 aa6.76□□□□□ -1.33
SYNE1-239ENST00000545694 FAM81BQ96LP2 452 aa6.76□□□□□ -1.33
SYNE1-239ENST00000545694 CCDC42Q96M95 316 aa6.76□□□□□ -1.33
SYNE1-239ENST00000545694 NIFKQ9BYG3 293 aaKnown RBP6.76□□□□□ -1.33
SYNE1-239ENST00000545694 MMRN2Q9H8L6 949 aa6.76□□□□□ -1.33
SYNE1-239ENST00000545694 L2HGDHQ9H9P8 463 aa6.76□□□□□ -1.33
SYNE1-239ENST00000545694 ATP6V0A4Q9HBG4 840 aa6.76□□□□□ -1.33
SYNE1-239ENST00000545694 KIAA1586Q9HCI6 787 aa6.76□□□□□ -1.33
SYNE1-239ENST00000545694 ZNF302Q9NR11 478 aa6.76□□□□□ -1.33
SYNE1-239ENST00000545694 PDLIM7Q9NR12 457 aa6.76□□□□□ -1.33
SYNE1-239ENST00000545694 TRMT1Q9NXH9 659 aaKnown RBP6.76□□□□□ -1.33
SYNE1-239ENST00000545694 BTBD7Q9P203 1132 aa6.76□□□□□ -1.33
SYNE1-239ENST00000545694 WRAP73Q9P2S5 460 aaPredicted RBP6.76□□□□□ -1.33
SYNE1-239ENST00000545694 GABBR1Q9UBS5 961 aa6.76□□□□□ -1.33
SYNE1-239ENST00000545694 MORF4L1Q9UBU8 362 aa6.76□□□□□ -1.33
SYNE1-239ENST00000545694 GDF2Q9UK05 429 aaPredicted RBP6.76□□□□□ -1.33
SYNE1-239ENST00000545694 ATXN7L1Q9ULK2 861 aaPredicted RBP6.76□□□□□ -1.33
SYNE1-239ENST00000545694 DIS3Q9Y2L1 958 aaKnown RBP6.76□□□□□ -1.33
SYNE1-239ENST00000545694 ZNF236Q9UL36 1845 aa6.76□□□□□ -1.33
SYNE1-239ENST00000545694 RSPH10B2B2RC85 870 aa6.75□□□□□ -1.33
SYNE1-239ENST00000545694 K7ENM7 598 aa6.75□□□□□ -1.33
SYNE1-239ENST00000545694 SOCS7O14512 581 aa6.75□□□□□ -1.33
SYNE1-239ENST00000545694 TGFB1I1O43294 461 aa6.75□□□□□ -1.33
SYNE1-239ENST00000545694 CTIFO43310 598 aaKnown RBP6.75□□□□□ -1.33
SYNE1-239ENST00000545694 USO1O60763 962 aaKnown RBP6.75□□□□□ -1.33
SYNE1-239ENST00000545694 COBLO75128 1261 aa6.75□□□□□ -1.33
SYNE1-239ENST00000545694 CNMDO75829 334 aa6.75□□□□□ -1.33
SYNE1-239ENST00000545694 RSPH10BP0C881 870 aa6.75□□□□□ -1.33
SYNE1-239ENST00000545694 KRT13P13646 458 aa6.75□□□□□ -1.33
SYNE1-239ENST00000545694 GARTP22102 1010 aa6.75□□□□□ -1.33
SYNE1-239ENST00000545694 FGFR3P22607 806 aa6.75□□□□□ -1.33
SYNE1-239ENST00000545694 GTF2H1P32780 548 aa6.75□□□□□ -1.33
SYNE1-239ENST00000545694 CASP5P51878 434 aa6.75□□□□□ -1.33
SYNE1-239ENST00000545694 RAD51AP2Q09MP3 1159 aa6.75□□□□□ -1.33
SYNE1-239ENST00000545694 TLR1Q15399 786 aa6.75□□□□□ -1.33
SYNE1-239ENST00000545694 EXOC3L4Q17RC7 722 aa6.75□□□□□ -1.33
SYNE1-239ENST00000545694 SLC9C1Q4G0N8 1177 aa6.75□□□□□ -1.33
SYNE1-239ENST00000545694 BRDTQ58F21 947 aaPredicted RBP6.75□□□□□ -1.33
SYNE1-239ENST00000545694 XP32Q5T750 250 aa6.75□□□□□ -1.33
SYNE1-239ENST00000545694 SFMBT2Q5VUG0 894 aa6.75□□□□□ -1.33
SYNE1-239ENST00000545694 PDXDC1Q6P996 788 aa6.75□□□□□ -1.33
SYNE1-239ENST00000545694 TRIM65Q6PJ69 517 aa6.75□□□□□ -1.33
SYNE1-239ENST00000545694 ANO5Q75V66 913 aa6.75□□□□□ -1.33
SYNE1-239ENST00000545694 PLPPR4Q7Z2D5 763 aa6.75□□□□□ -1.33
SYNE1-239ENST00000545694 HAUS6Q7Z4H7 955 aa6.75□□□□□ -1.33
SYNE1-239ENST00000545694 VPS36Q86VN1 386 aa6.75□□□□□ -1.33
SYNE1-239ENST00000545694 MAP4K3Q8IVH8 894 aa6.75□□□□□ -1.33
SYNE1-239ENST00000545694 DAW1Q8N136 415 aa6.75□□□□□ -1.33
SYNE1-239ENST00000545694 GOLGA6L1Q8N7Z2 621 aa6.75□□□□□ -1.33
SYNE1-239ENST00000545694 XXYLT1Q8NBI6 393 aa6.75□□□□□ -1.33
SYNE1-239ENST00000545694 GLIS3Q8NEA6 775 aa6.75□□□□□ -1.33
SYNE1-239ENST00000545694 RHBDD1Q8TEB9 315 aa6.75□□□□□ -1.33
SYNE1-239ENST00000545694 BORCS6Q96GS4 357 aa6.75□□□□□ -1.33
SYNE1-239ENST00000545694 CLMNQ96JQ2 1002 aa6.75□□□□□ -1.33
SYNE1-239ENST00000545694 CALR3Q96L12 384 aaKnown RBP6.75□□□□□ -1.33
SYNE1-239ENST00000545694 UIMC1Q96RL1 719 aa6.75□□□□□ -1.33
SYNE1-239ENST00000545694 PARK7Q99497 189 aaKnown RBP6.75□□□□□ -1.33
SYNE1-239ENST00000545694 MMP19Q99542 508 aa6.75□□□□□ -1.33
SYNE1-239ENST00000545694 SUV39H2Q9H5I1 410 aa6.75□□□□□ -1.33
SYNE1-239ENST00000545694 AZI2Q9H6S1 392 aa6.75□□□□□ -1.33
SYNE1-239ENST00000545694 GBA2Q9HCG7 927 aaPredicted RBP6.75□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms