RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 KIF22Q14807 665 aa16.16■□□□□ 0.18
USP28-214ENST00000545540 STXBP4Q6ZWJ1 553 aa16.16■□□□□ 0.18
USP28-214ENST00000545540 TAB3Q8N5C8 712 aaPredicted RBP16.16■□□□□ 0.18
USP28-214ENST00000545540 UBL4BQ8N7F7 174 aa16.16■□□□□ 0.18
USP28-214ENST00000545540 PRPF38AQ8NAV1 312 aaKnown RBP16.16■□□□□ 0.18
USP28-214ENST00000545540 ASIC3Q9UHC3 531 aa16.16■□□□□ 0.18
USP28-214ENST00000545540 INTUQ9ULD6 942 aa16.16■□□□□ 0.18
USP28-214ENST00000545540 USTQ9Y2C2 406 aa16.16■□□□□ 0.18
USP28-214ENST00000545540 MRPL11Q9Y3B7 192 aaKnown RBP16.16■□□□□ 0.18
USP28-214ENST00000545540 DLGAP5Q15398 846 aa16.16■□□□□ 0.18
USP28-214ENST00000545540 SLC27A3Q5K4L6 730 aa16.16■□□□□ 0.18
USP28-214ENST00000545540 SEL1L2Q5TEA6 688 aa16.16■□□□□ 0.18
USP28-214ENST00000545540 C6orf89Q6UWU4 347 aa16.16■□□□□ 0.18
USP28-214ENST00000545540 WNK4Q96J92 1243 aa16.16■□□□□ 0.18
USP28-214ENST00000545540 KCNK9Q9NPC2 374 aa16.16■□□□□ 0.18
USP28-214ENST00000545540 FMO1Q01740 532 aa16.15■□□□□ 0.18
USP28-214ENST00000545540 RASA3Q14644 834 aa16.15■□□□□ 0.18
USP28-214ENST00000545540 SNRNP35Q16560 246 aaKnown RBP16.15■□□□□ 0.18
USP28-214ENST00000545540 ZFYVE27Q5T4F4 411 aa16.15■□□□□ 0.18
USP28-214ENST00000545540 GKAP1Q5VSY0 366 aaPredicted RBP16.15■□□□□ 0.18
USP28-214ENST00000545540 CYFIP1Q7L576 1253 aa16.15■□□□□ 0.18
USP28-214ENST00000545540 ADAM7Q9H2U9 754 aa16.15■□□□□ 0.18
USP28-214ENST00000545540 ZNF70Q9UC06 446 aaPredicted RBP16.15■□□□□ 0.18
USP28-214ENST00000545540 DRD4P21917 467 aa16.15■□□□□ 0.18
USP28-214ENST00000545540 HSPA1LP34931 641 aa16.15■□□□□ 0.18
USP28-214ENST00000545540 PEX5P50542 639 aa16.15■□□□□ 0.18
USP28-214ENST00000545540 CETN1Q12798 172 aa16.15■□□□□ 0.18
USP28-214ENST00000545540 TBC1D31Q96DN5 1066 aa16.15■□□□□ 0.18
USP28-214ENST00000545540 MKNK1Q9BUB5 465 aa16.15■□□□□ 0.18
USP28-214ENST00000545540 KLC4Q9NSK0 619 aa16.15■□□□□ 0.18
USP28-214ENST00000545540 SIPA1L1O43166 1804 aa16.15■□□□□ 0.18
USP28-214ENST00000545540 DHX15O43143 795 aaKnown RBP16.15■□□□□ 0.18
USP28-214ENST00000545540 PHF2O75151 1096 aa16.15■□□□□ 0.18
USP28-214ENST00000545540 MTMR1Q13613 665 aa16.15■□□□□ 0.18
USP28-214ENST00000545540 PPP2R5AQ15172 486 aa16.15■□□□□ 0.18
USP28-214ENST00000545540 KYNUQ16719 465 aa16.15■□□□□ 0.18
USP28-214ENST00000545540 PRAMEF18Q5VWM3 479 aa16.15■□□□□ 0.18
USP28-214ENST00000545540 MCTP2Q6DN12 878 aa16.15■□□□□ 0.18
USP28-214ENST00000545540 CNPY4Q8N129 248 aa16.15■□□□□ 0.18
USP28-214ENST00000545540 CHURC1Q8WUH1 139 aa16.15■□□□□ 0.18
USP28-214ENST00000545540 BSNDQ8WZ55 320 aa16.15■□□□□ 0.18
USP28-214ENST00000545540 INTS9Q9NV88 658 aaKnown RBP16.15■□□□□ 0.18
USP28-214ENST00000545540 ANAPC7Q9UJX3 599 aa16.15■□□□□ 0.18
USP28-214ENST00000545540 TRPC5Q9UL62 973 aaPredicted RBP16.15■□□□□ 0.18
USP28-214ENST00000545540 FOCADQ5VW36 1801 aa16.14■□□□□ 0.17
USP28-214ENST00000545540 GH1P01241 217 aa16.14■□□□□ 0.17
USP28-214ENST00000545540 SLC15A2Q16348 729 aa16.14■□□□□ 0.17
USP28-214ENST00000545540 INTS8Q75QN2 995 aaKnown RBP16.14■□□□□ 0.17
USP28-214ENST00000545540 CCDC50Q8IVM0 306 aa16.14■□□□□ 0.17
USP28-214ENST00000545540 ACSF2Q96CM8 615 aaPredicted RBP16.14■□□□□ 0.17
USP28-214ENST00000545540 CHMP6Q96FZ7 201 aa16.14■□□□□ 0.17
USP28-214ENST00000545540 ACCSQ96QU6 501 aa16.14■□□□□ 0.17
USP28-214ENST00000545540 VCPKMTQ9H867 229 aa16.14■□□□□ 0.17
USP28-214ENST00000545540 DENND3A2RUS2 1198 aa16.14■□□□□ 0.17
USP28-214ENST00000545540 PEX10O60683 326 aa16.14■□□□□ 0.17
USP28-214ENST00000545540 CCDC172P0C7W6 258 aa16.14■□□□□ 0.17
USP28-214ENST00000545540 HARSP12081 509 aaKnown RBP16.14■□□□□ 0.17
USP28-214ENST00000545540 CYP11B1P15538 503 aa16.14■□□□□ 0.17
USP28-214ENST00000545540 HOXA7P31268 230 aaPredicted RBP16.14■□□□□ 0.17
USP28-214ENST00000545540 PSMC4P43686 418 aa16.14■□□□□ 0.17
USP28-214ENST00000545540 TKFCQ3LXA3 575 aa16.14■□□□□ 0.17
USP28-214ENST00000545540 RNF207Q6ZRF8 634 aa16.14■□□□□ 0.17
USP28-214ENST00000545540 KIRREL3Q8IZU9 778 aa16.14■□□□□ 0.17
USP28-214ENST00000545540 DYDC1Q8WWB3 177 aa16.14■□□□□ 0.17
USP28-214ENST00000545540 SEC14L1Q92503 715 aa16.14■□□□□ 0.17
USP28-214ENST00000545540 ODF2LQ9ULJ1 636 aa16.14■□□□□ 0.17
USP28-214ENST00000545540 EPB41L3Q9Y2J2 1087 aaPredicted RBP16.14■□□□□ 0.17
USP28-214ENST00000545540 R3HDM2Q9Y2K5 976 aaKnown RBP16.14■□□□□ 0.17
USP28-214ENST00000545540 UBR3Q6ZT12 1888 aa16.14■□□□□ 0.17
USP28-214ENST00000545540 SPDYE2BA6NHP3 402 aa16.13■□□□□ 0.17
USP28-214ENST00000545540 BHMG1C9JSJ3 638 aaPredicted RBP16.13■□□□□ 0.17
USP28-214ENST00000545540 ECM2O94769 699 aaPredicted RBP16.13■□□□□ 0.17
USP28-214ENST00000545540 P4HBP07237 508 aaKnown RBP16.13■□□□□ 0.17
USP28-214ENST00000545540 SPDYE6P0CI01 402 aa16.13■□□□□ 0.17
USP28-214ENST00000545540 CNGA1P29973 690 aa16.13■□□□□ 0.17
USP28-214ENST00000545540 COILP38432 576 aaPredicted RBP16.13■□□□□ 0.17
USP28-214ENST00000545540 ANKRD20A8PQ5CZ79 823 aa16.13■□□□□ 0.17
USP28-214ENST00000545540 SLC13A5Q86YT5 568 aaPredicted RBP16.13■□□□□ 0.17
USP28-214ENST00000545540 RHOT2Q8IXI1 618 aa16.13■□□□□ 0.17
USP28-214ENST00000545540 HVCN1Q96D96 273 aa16.13■□□□□ 0.17
USP28-214ENST00000545540 FAM213AQ9BRX8 229 aa16.13■□□□□ 0.17
USP28-214ENST00000545540 TXLNGYQ9BZA5 131 aa16.13■□□□□ 0.17
USP28-214ENST00000545540 NOCTQ9UK39 431 aaKnown RBP16.13■□□□□ 0.17
USP28-214ENST00000545540 LTBP4Q8N2S1 1624 aa16.13■□□□□ 0.17
USP28-214ENST00000545540 RTN2O75298 545 aa16.13■□□□□ 0.17
USP28-214ENST00000545540 FSBPO95073 299 aa16.13■□□□□ 0.17
USP28-214ENST00000545540 CCNE2O96020 404 aa16.13■□□□□ 0.17
USP28-214ENST00000545540 SCTRP47872 440 aa16.13■□□□□ 0.17
USP28-214ENST00000545540 QARSP47897 775 aaKnown RBP16.13■□□□□ 0.17
USP28-214ENST00000545540 AGBL2Q5U5Z8 902 aa16.13■□□□□ 0.17
USP28-214ENST00000545540 TCP11Q8WWU5 503 aa16.13■□□□□ 0.17
USP28-214ENST00000545540 RANBP17Q9H2T7 1088 aaKnown RBP16.13■□□□□ 0.17
USP28-214ENST00000545540 RASGRF2O14827 1237 aa16.13■□□□□ 0.17
USP28-214ENST00000545540 EGFRP00533 1210 aa16.13■□□□□ 0.17
USP28-214ENST00000545540 PLS3P13797 630 aa16.13■□□□□ 0.17
USP28-214ENST00000545540 RPS6P62753 249 aaKnown RBP16.13■□□□□ 0.17
USP28-214ENST00000545540 SGO2Q562F6 1265 aa16.13■□□□□ 0.17
USP28-214ENST00000545540 PNMA8AQ86V59 439 aaPredicted RBP16.13■□□□□ 0.17
USP28-214ENST00000545540 SPIRE2Q8WWL2 714 aa16.13■□□□□ 0.17
USP28-214ENST00000545540 BICD1Q96G01 975 aa16.13■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms