RNA–Protein interactions for RNA: ENST00000544750.1

USP28-212, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 542 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-212ENST00000544750 FERMT3Q86UX7 667 aa14.33□□□□□ -0.12
USP28-212ENST00000544750 ST13P5Q8NFI4 369 aaPredicted RBP14.33□□□□□ -0.12
USP28-212ENST00000544750 PSPC1Q8WXF1 523 aaKnown RBP14.33□□□□□ -0.12
USP28-212ENST00000544750 SLC7A3Q8WY07 619 aa14.33□□□□□ -0.12
USP28-212ENST00000544750 FGF14Q92915 247 aa14.33□□□□□ -0.12
USP28-212ENST00000544750 TMEM143Q96AN5 459 aa14.33□□□□□ -0.12
USP28-212ENST00000544750 BORCS6Q96GS4 357 aa14.33□□□□□ -0.12
USP28-212ENST00000544750 B3GALT6Q96L58 329 aa14.33□□□□□ -0.12
USP28-212ENST00000544750 ZFP42Q96MM3 310 aa14.33□□□□□ -0.12
USP28-212ENST00000544750 SLC26A6Q9BXS9 759 aa14.33□□□□□ -0.12
USP28-212ENST00000544750 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP14.33□□□□□ -0.12
USP28-212ENST00000544750 PCDHA4Q9UN74 947 aa14.33□□□□□ -0.12
USP28-212ENST00000544750 ZFP37Q9Y6Q3 630 aaPredicted RBP14.33□□□□□ -0.12
USP28-212ENST00000544750 SLC37A4O43826 429 aa14.32□□□□□ -0.12
USP28-212ENST00000544750 TSPAN1O60635 241 aa14.32□□□□□ -0.12
USP28-212ENST00000544750 ZMYND10O75800 440 aa14.32□□□□□ -0.12
USP28-212ENST00000544750 AXLP30530 894 aa14.32□□□□□ -0.12
USP28-212ENST00000544750 EVCP57679 992 aa14.32□□□□□ -0.12
USP28-212ENST00000544750 GPC5P78333 572 aa14.32□□□□□ -0.12
USP28-212ENST00000544750 PCBP1Q15365 356 aaKnown RBP eCLIP14.32□□□□□ -0.12
USP28-212ENST00000544750 RSPO4Q2I0M5 234 aaPredicted RBP14.32□□□□□ -0.12
USP28-212ENST00000544750 USP41Q3LFD5 358 aa14.32□□□□□ -0.12
USP28-212ENST00000544750 PARM1Q6UWI2 310 aa14.32□□□□□ -0.12
USP28-212ENST00000544750 IFNLR1Q8IU57 520 aaPredicted RBP14.32□□□□□ -0.12
USP28-212ENST00000544750 EXOC8Q8IYI6 725 aa14.32□□□□□ -0.12
USP28-212ENST00000544750 RNF149Q8NC42 400 aa14.32□□□□□ -0.12
USP28-212ENST00000544750 NELL1Q92832 810 aa14.32□□□□□ -0.12
USP28-212ENST00000544750 CEP170P1Q96L14 293 aa14.32□□□□□ -0.12
USP28-212ENST00000544750 CNTNAP3BQ96NU0 1288 aa14.32□□□□□ -0.12
USP28-212ENST00000544750 HINFPQ9BQA5 517 aa14.32□□□□□ -0.12
USP28-212ENST00000544750 CNTNAP3Q9BZ76 1288 aa14.32□□□□□ -0.12
USP28-212ENST00000544750 PIDD1Q9HB75 910 aa14.32□□□□□ -0.12
USP28-212ENST00000544750 KCNMB3Q9NPA1 279 aa14.32□□□□□ -0.12
USP28-212ENST00000544750 FBXO4Q9UKT5 387 aa14.32□□□□□ -0.12
USP28-212ENST00000544750 HES2Q9Y543 173 aa14.32□□□□□ -0.12
USP28-212ENST00000544750 KANSL1LA0AUZ9 987 aa14.31□□□□□ -0.12
USP28-212ENST00000544750 ASAP2O43150 1006 aa14.31□□□□□ -0.12
USP28-212ENST00000544750 KINO60870 393 aaKnown RBP14.31□□□□□ -0.12
USP28-212ENST00000544750 P4HBP07237 508 aaKnown RBP14.31□□□□□ -0.12
USP28-212ENST00000544750 RPL17P18621 184 aaKnown RBP14.31□□□□□ -0.12
USP28-212ENST00000544750 RFC5P40937 340 aa14.31□□□□□ -0.12
USP28-212ENST00000544750 NLRP5P59047 1200 aa14.31□□□□□ -0.12
USP28-212ENST00000544750 PTENP60484 403 aa14.31□□□□□ -0.12
USP28-212ENST00000544750 FGD1P98174 961 aa14.31□□□□□ -0.12
USP28-212ENST00000544750 AMHR2Q16671 573 aa14.31□□□□□ -0.12
USP28-212ENST00000544750 NOTUMQ6P988 496 aa14.31□□□□□ -0.12
USP28-212ENST00000544750 C4orf19Q8IY42 314 aa14.31□□□□□ -0.12
USP28-212ENST00000544750 DAGLBQ8NCG7 672 aa14.31□□□□□ -0.12
USP28-212ENST00000544750 CCDC51Q96ER9 411 aa14.31□□□□□ -0.12
USP28-212ENST00000544750 SHDQ96IW2 340 aa14.31□□□□□ -0.12
USP28-212ENST00000544750 COLEC11Q9BWP8 271 aa14.31□□□□□ -0.12
USP28-212ENST00000544750 OSBPL6Q9BZF3 934 aa14.31□□□□□ -0.12
USP28-212ENST00000544750 CSRNP2Q9H175 543 aa14.31□□□□□ -0.12
USP28-212ENST00000544750 XPNPEP1Q9NQW7 623 aa14.31□□□□□ -0.12
USP28-212ENST00000544750 FBXW11Q9UKB1 542 aa14.31□□□□□ -0.12
USP28-212ENST00000544750 ADAM28Q9UKQ2 775 aa14.31□□□□□ -0.12
USP28-212ENST00000544750 GIT1Q9Y2X7 761 aa14.31□□□□□ -0.12
USP28-212ENST00000544750 MTF2Q9Y483 593 aaPredicted RBP14.31□□□□□ -0.12
USP28-212ENST00000544750 MAP1BP46821 2468 aaKnown RBP14.31□□□□□ -0.12
USP28-212ENST00000544750 RALGAPA1Q6GYQ0 2036 aa14.31□□□□□ -0.12
USP28-212ENST00000544750 F5P12259 2224 aa14.3□□□□□ -0.12
USP28-212ENST00000544750 SPTLC1O15269 473 aa14.3□□□□□ -0.12
USP28-212ENST00000544750 KRT37O76014 449 aa14.3□□□□□ -0.12
USP28-212ENST00000544750 FSHRP23945 695 aa14.3□□□□□ -0.12
USP28-212ENST00000544750 PDIA3P30101 505 aaKnown RBP14.3□□□□□ -0.12
USP28-212ENST00000544750 PRKCQQ04759 706 aa14.3□□□□□ -0.12
USP28-212ENST00000544750 POU5F1BQ06416 359 aa14.3□□□□□ -0.12
USP28-212ENST00000544750 SNW1Q13573 536 aaKnown RBP14.3□□□□□ -0.12
USP28-212ENST00000544750 EMC2Q15006 297 aa14.3□□□□□ -0.12
USP28-212ENST00000544750 VARS2Q5ST30 1063 aaKnown RBP14.3□□□□□ -0.12
USP28-212ENST00000544750 GLYCTKQ8IVS8 523 aa14.3□□□□□ -0.12
USP28-212ENST00000544750 BLIDQ8IZY5 108 aa14.3□□□□□ -0.12
USP28-212ENST00000544750 ZBTB44Q8NCP5 570 aa14.3□□□□□ -0.12
USP28-212ENST00000544750 TCP11Q8WWU5 503 aa14.3□□□□□ -0.12
USP28-212ENST00000544750 CPB2Q96IY4 423 aa14.3□□□□□ -0.12
USP28-212ENST00000544750 NCOA5Q9HCD5 579 aaKnown RBP14.3□□□□□ -0.12
USP28-212ENST00000544750 BMP2KQ9NSY1 1161 aaPredicted RBP14.3□□□□□ -0.12
USP28-212ENST00000544750 DDX25Q9UHL0 483 aaKnown RBP14.3□□□□□ -0.12
USP28-212ENST00000544750 CDH7Q9ULB5 785 aa14.3□□□□□ -0.12
USP28-212ENST00000544750 SNX14Q9Y5W7 946 aa14.3□□□□□ -0.12
USP28-212ENST00000544750 ZMYM2Q9UBW7 1377 aa14.3□□□□□ -0.12
USP28-212ENST00000544750 COL4A2P08572 1712 aa14.29□□□□□ -0.12
USP28-212ENST00000544750 ZBTB39O15060 712 aa14.29□□□□□ -0.12
USP28-212ENST00000544750 DKC1O60832 514 aaKnown RBP eCLIP14.29□□□□□ -0.12
USP28-212ENST00000544750 LILRB5O75023 590 aa14.29□□□□□ -0.12
USP28-212ENST00000544750 ERLIN2O94905 339 aa14.29□□□□□ -0.12
USP28-212ENST00000544750 ARF4P18085 180 aaPredicted RBP14.29□□□□□ -0.12
USP28-212ENST00000544750 TGM1P22735 817 aa14.29□□□□□ -0.12
USP28-212ENST00000544750 RPS6KB1P23443 525 aa14.29□□□□□ -0.12
USP28-212ENST00000544750 ATXN1P54253 815 aaKnown RBP14.29□□□□□ -0.12
USP28-212ENST00000544750 CCT2P78371 535 aaKnown RBP14.29□□□□□ -0.12
USP28-212ENST00000544750 NTHL1P78549 312 aa14.29□□□□□ -0.12
USP28-212ENST00000544750 MLF2Q15773 248 aaPredicted RBP14.29□□□□□ -0.12
USP28-212ENST00000544750 INF2Q27J81 1249 aa14.29□□□□□ -0.12
USP28-212ENST00000544750 RTP2Q5QGT7 225 aa14.29□□□□□ -0.12
USP28-212ENST00000544750 BLOC1S2Q6QNY1 142 aa14.29□□□□□ -0.12
USP28-212ENST00000544750 PRSS55Q6UWB4 352 aaPredicted RBP14.29□□□□□ -0.12
USP28-212ENST00000544750 GRASPQ7Z6J2 395 aaPredicted RBP14.29□□□□□ -0.12
USP28-212ENST00000544750 FAM20AQ96MK3 541 aa14.29□□□□□ -0.12
USP28-212ENST00000544750 JAKMIP1Q96N16 626 aaKnown RBP14.29□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms