RNA–Protein interactions for RNA: ENST00000543766.2

VPS13D-212, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2 BASIC

Gene VPS13D, Length 3,838 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-212ENST00000543766 CPSF1Q10570 1443 aaKnown RBP9.46□□□□□ -0.89
VPS13D-212ENST00000543766 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.46□□□□□ -0.9
VPS13D-212ENST00000543766 NBPF26B4DH59 902 aa9.46□□□□□ -0.9
VPS13D-212ENST00000543766 CHRNB1P11230 501 aa9.46□□□□□ -0.9
VPS13D-212ENST00000543766 EDN3P14138 238 aa9.46□□□□□ -0.9
VPS13D-212ENST00000543766 HSD3B2P26439 372 aa9.46□□□□□ -0.9
VPS13D-212ENST00000543766 FNTAP49354 379 aa9.46□□□□□ -0.9
VPS13D-212ENST00000543766 DIO1P49895 249 aa9.46□□□□□ -0.9
VPS13D-212ENST00000543766 PTPN5P54829 565 aa9.46□□□□□ -0.9
VPS13D-212ENST00000543766 ADARP55265 1226 aaKnown RBP9.46□□□□□ -0.9
VPS13D-212ENST00000543766 VBP1P61758 197 aa9.46□□□□□ -0.9
VPS13D-212ENST00000543766 POLR2GP62487 172 aaKnown RBP eCLIP9.46□□□□□ -0.9
VPS13D-212ENST00000543766 PON2Q15165 354 aa9.46□□□□□ -0.9
VPS13D-212ENST00000543766 MOGQ16653 247 aa9.46□□□□□ -0.9
VPS13D-212ENST00000543766 TMEM95Q3KNT9 176 aa9.46□□□□□ -0.9
VPS13D-212ENST00000543766 CLEC2AQ6UVW9 174 aa9.46□□□□□ -0.9
VPS13D-212ENST00000543766 ATG9AQ7Z3C6 839 aa9.46□□□□□ -0.9
VPS13D-212ENST00000543766 RASEFQ8IZ41 740 aa9.46□□□□□ -0.9
VPS13D-212ENST00000543766 AIFM2Q9BRQ8 373 aa9.46□□□□□ -0.9
VPS13D-212ENST00000543766 ZKSCAN3Q9BRR0 538 aa9.46□□□□□ -0.9
VPS13D-212ENST00000543766 AGPAT3Q9NRZ7 376 aa9.46□□□□□ -0.9
VPS13D-212ENST00000543766 DACT1Q9NYF0 836 aa9.46□□□□□ -0.9
VPS13D-212ENST00000543766 CNTN3Q9P232 1028 aa9.46□□□□□ -0.9
VPS13D-212ENST00000543766 MARF1Q9Y4F3 1742 aaKnown RBP9.46□□□□□ -0.9
VPS13D-212ENST00000543766 H7C0C1 242 aa9.46□□□□□ -0.9
VPS13D-212ENST00000543766 IDO1P14902 403 aa9.46□□□□□ -0.9
VPS13D-212ENST00000543766 IST1P53990 364 aa9.46□□□□□ -0.9
VPS13D-212ENST00000543766 CARD18P57730 90 aa9.46□□□□□ -0.9
VPS13D-212ENST00000543766 COTL1Q14019 142 aa9.46□□□□□ -0.9
VPS13D-212ENST00000543766 MAPK6Q16659 721 aa9.46□□□□□ -0.9
VPS13D-212ENST00000543766 BORAQ6PGQ7 559 aa9.46□□□□□ -0.9
VPS13D-212ENST00000543766 EXOC3L1Q86VI1 746 aa9.46□□□□□ -0.9
VPS13D-212ENST00000543766 C7orf61Q8IZ16 206 aa9.46□□□□□ -0.9
VPS13D-212ENST00000543766 CARD6Q9BX69 1037 aa9.46□□□□□ -0.9
VPS13D-212ENST00000543766 NAA15Q9BXJ9 866 aaKnown RBP9.46□□□□□ -0.9
VPS13D-212ENST00000543766 IL25Q9H293 177 aa9.46□□□□□ -0.9
VPS13D-212ENST00000543766 NGRNQ9NPE2 291 aaKnown RBP9.46□□□□□ -0.9
VPS13D-212ENST00000543766 FBXO40Q9UH90 709 aa9.46□□□□□ -0.9
VPS13D-212ENST00000543766 PCDHGA8Q9Y5G5 932 aa9.46□□□□□ -0.9
VPS13D-212ENST00000543766 CTAGE9A4FU28 777 aa9.45□□□□□ -0.9
VPS13D-212ENST00000543766 RSPH10B2B2RC85 870 aa9.45□□□□□ -0.9
VPS13D-212ENST00000543766 BACH1O14867 736 aa9.45□□□□□ -0.9
VPS13D-212ENST00000543766 KLHL2O95198 593 aa9.45□□□□□ -0.9
VPS13D-212ENST00000543766 NPTXRO95502 500 aa9.45□□□□□ -0.9
VPS13D-212ENST00000543766 ALOX5P09917 674 aa9.45□□□□□ -0.9
VPS13D-212ENST00000543766 RSPH10BP0C881 870 aa9.45□□□□□ -0.9
VPS13D-212ENST00000543766 GALNSP34059 522 aa9.45□□□□□ -0.9
VPS13D-212ENST00000543766 KPNA1P52294 538 aaPredicted RBP9.45□□□□□ -0.9
VPS13D-212ENST00000543766 NUBP1P53384 320 aa9.45□□□□□ -0.9
VPS13D-212ENST00000543766 ROR1Q01973 937 aa9.45□□□□□ -0.9
VPS13D-212ENST00000543766 PRKCEQ02156 737 aa9.45□□□□□ -0.9
VPS13D-212ENST00000543766 TRIM25Q14258 630 aaKnown RBP9.45□□□□□ -0.9
VPS13D-212ENST00000543766 SETMARQ53H47 684 aaPredicted RBP9.45□□□□□ -0.9
VPS13D-212ENST00000543766 PPP1R26Q5T8A7 1209 aaPredicted RBP9.45□□□□□ -0.9
VPS13D-212ENST00000543766 SPICE1Q8N0Z3 855 aa9.45□□□□□ -0.9
VPS13D-212ENST00000543766 NAF1Q96HR8 494 aaKnown RBP9.45□□□□□ -0.9
VPS13D-212ENST00000543766 GBA3Q9H227 469 aa9.45□□□□□ -0.9
VPS13D-212ENST00000543766 GHITMQ9H3K2 345 aa9.45□□□□□ -0.9
VPS13D-212ENST00000543766 OLA1Q9NTK5 396 aaKnown RBP9.45□□□□□ -0.9
VPS13D-212ENST00000543766 PARVAQ9NVD7 372 aa9.45□□□□□ -0.9
VPS13D-212ENST00000543766 GIMAP2Q9UG22 337 aa9.45□□□□□ -0.9
VPS13D-212ENST00000543766 L1RE1Q9UN81 338 aa9.45□□□□□ -0.9
VPS13D-212ENST00000543766 GPC6Q9Y625 555 aaPredicted RBP9.45□□□□□ -0.9
VPS13D-212ENST00000543766 NPHP3Q7Z494 1330 aa9.45□□□□□ -0.9
VPS13D-212ENST00000543766 USP54Q70EL1 1684 aa9.45□□□□□ -0.9
VPS13D-212ENST00000543766 ANO9A1A5B4 782 aa9.45□□□□□ -0.9
VPS13D-212ENST00000543766 SMIM23A6NLE4 172 aa9.45□□□□□ -0.9
VPS13D-212ENST00000543766 VSTM5A8MXK1 200 aa9.45□□□□□ -0.9
VPS13D-212ENST00000543766 UBAP1LF5GYI3 381 aa9.45□□□□□ -0.9
VPS13D-212ENST00000543766 N4BP1O75113 896 aaKnown RBP9.45□□□□□ -0.9
VPS13D-212ENST00000543766 CALM1P0DP23 149 aa9.45□□□□□ -0.9
VPS13D-212ENST00000543766 CALM2P0DP24 149 aa9.45□□□□□ -0.9
VPS13D-212ENST00000543766 CALM3P0DP25 149 aa9.45□□□□□ -0.9
VPS13D-212ENST00000543766 MYL4P12829 197 aa9.45□□□□□ -0.9
VPS13D-212ENST00000543766 POLR2EP19388 210 aaKnown RBP9.45□□□□□ -0.9
VPS13D-212ENST00000543766 CFL1P23528 166 aaKnown RBP9.45□□□□□ -0.9
VPS13D-212ENST00000543766 FUT2Q10981 343 aa9.45□□□□□ -0.9
VPS13D-212ENST00000543766 ZNF124Q15973 351 aa9.45□□□□□ -0.9
VPS13D-212ENST00000543766 CAMK4Q16566 473 aa9.45□□□□□ -0.9
VPS13D-212ENST00000543766 SPDYAQ5MJ70 313 aa9.45□□□□□ -0.9
VPS13D-212ENST00000543766 VASH1Q7L8A9 365 aaPredicted RBP9.45□□□□□ -0.9
VPS13D-212ENST00000543766 CDKL2Q92772 493 aa9.45□□□□□ -0.9
VPS13D-212ENST00000543766 ERLEC1Q96DZ1 483 aa9.45□□□□□ -0.9
VPS13D-212ENST00000543766 SDF4Q9BRK5 362 aa9.45□□□□□ -0.9
VPS13D-212ENST00000543766 TSEN34Q9BSV6 310 aaKnown RBP9.45□□□□□ -0.9
VPS13D-212ENST00000543766 GGA3Q9NZ52 723 aa9.45□□□□□ -0.9
VPS13D-212ENST00000543766 DLGAP2Q9P1A6 1054 aa9.45□□□□□ -0.9
VPS13D-212ENST00000543766 DDX25Q9UHL0 483 aaKnown RBP9.45□□□□□ -0.9
VPS13D-212ENST00000543766 AGTPBP1Q9UPW5 1226 aa9.45□□□□□ -0.9
VPS13D-212ENST00000543766 C9IYK1 514 aa9.45□□□□□ -0.9
VPS13D-212ENST00000543766 F5H423 210 aaPredicted RBP9.45□□□□□ -0.9
VPS13D-212ENST00000543766 SGK1O00141 431 aa9.45□□□□□ -0.9
VPS13D-212ENST00000543766 KRT86O43790 486 aa9.45□□□□□ -0.9
VPS13D-212ENST00000543766 GAS8O95995 478 aa9.45□□□□□ -0.9
VPS13D-212ENST00000543766 EIF2B2P49770 351 aaKnown RBP9.45□□□□□ -0.9
VPS13D-212ENST00000543766 THOP1P52888 689 aa9.45□□□□□ -0.9
VPS13D-212ENST00000543766 RPP38P78345 283 aaKnown RBP9.45□□□□□ -0.9
VPS13D-212ENST00000543766 BFSP1Q12934 665 aa9.45□□□□□ -0.9
VPS13D-212ENST00000543766 NELFCDQ8IXH7 590 aa9.45□□□□□ -0.9
VPS13D-212ENST00000543766 ARHGEF26Q96DR7 871 aa9.45□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms