RNA–Protein interactions for RNA: ENST00000543658.5

DDB1-223, Transcript of damage specific DNA binding protein 1, human

TSL 4

Gene DDB1, Length 571 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDB1-223	ENST00000543658	GPD1L	Q8N335	351 aa		12.98	□□□□□ -0.33
DDB1-223	ENST00000543658	XXYLT1	Q8NBI6	393 aa		12.98	□□□□□ -0.33
DDB1-223	ENST00000543658	RNF214	Q8ND24	703 aa		12.98	□□□□□ -0.33
DDB1-223	ENST00000543658	CEP63	Q96MT8	703 aa		12.98	□□□□□ -0.33
DDB1-223	ENST00000543658	CBWD1	Q9BRT8	395 aa		12.98	□□□□□ -0.33
DDB1-223	ENST00000543658	WNT8A	Q9H1J5	351 aa		12.98	□□□□□ -0.33
DDB1-223	ENST00000543658	CBX8	Q9HC52	389 aa		12.98	□□□□□ -0.33
DDB1-223	ENST00000543658	KIAA1586	Q9HCI6	787 aa		12.98	□□□□□ -0.33
DDB1-223	ENST00000543658	HSPBP1	Q9NZL4	362 aa		12.98	□□□□□ -0.33
DDB1-223	ENST00000543658	AGO2	Q9UKV8	859 aa	Known RBP	12.98	□□□□□ -0.33
DDB1-223	ENST00000543658	USP20	Q9Y2K6	914 aa		12.98	□□□□□ -0.33
DDB1-223	ENST00000543658	NFE2L3	Q9Y4A8	694 aa		12.98	□□□□□ -0.33
DDB1-223	ENST00000543658	DNAH12	Q6ZR08	3092 aa		12.97	□□□□□ -0.33
DDB1-223	ENST00000543658		A0A1B0GUA9	196 aa		12.97	□□□□□ -0.33
DDB1-223	ENST00000543658	TRIM43B	A6NCK2	446 aa		12.97	□□□□□ -0.33
DDB1-223	ENST00000543658	TISP43	B9A030	160 aa		12.97	□□□□□ -0.33
DDB1-223	ENST00000543658	OGT	O15294	1046 aa		12.97	□□□□□ -0.33
DDB1-223	ENST00000543658	NBN	O60934	754 aa		12.97	□□□□□ -0.33
DDB1-223	ENST00000543658	GNA14	O95837	355 aa		12.97	□□□□□ -0.33
DDB1-223	ENST00000543658	EDN1	P05305	212 aa		12.97	□□□□□ -0.33
DDB1-223	ENST00000543658	PFKM	P08237	780 aa		12.97	□□□□□ -0.33
DDB1-223	ENST00000543658	ACTN1	P12814	892 aa		12.97	□□□□□ -0.33
DDB1-223	ENST00000543658	CDK11B	P21127	795 aa	Known RBP	12.97	□□□□□ -0.33
DDB1-223	ENST00000543658	RAB27A	P51159	221 aa		12.97	□□□□□ -0.33
DDB1-223	ENST00000543658	MCL1	Q07820	350 aa		12.97	□□□□□ -0.33
DDB1-223	ENST00000543658	PPIG	Q13427	754 aa	Known RBP eCLIP	12.97	□□□□□ -0.33	2e-6	■■■■□ 20.9
DDB1-223	ENST00000543658	MFSD5	Q6N075	450 aa		12.97	□□□□□ -0.33
DDB1-223	ENST00000543658	SLC39A4	Q6P5W5	647 aa		12.97	□□□□□ -0.33
DDB1-223	ENST00000543658	USP37	Q86T82	979 aa		12.97	□□□□□ -0.33
DDB1-223	ENST00000543658	SLC9A9	Q8IVB4	645 aa		12.97	□□□□□ -0.33
DDB1-223	ENST00000543658	TRIM43	Q96BQ3	446 aa	Predicted RBP	12.97	□□□□□ -0.33
DDB1-223	ENST00000543658	SAAL1	Q96ER3	474 aa		12.97	□□□□□ -0.33
DDB1-223	ENST00000543658	ZBTB45	Q96K62	511 aa	Predicted RBP	12.97	□□□□□ -0.33
DDB1-223	ENST00000543658	LBHD1	Q9BQE6	289 aa	Predicted RBP	12.97	□□□□□ -0.33
DDB1-223	ENST00000543658	CCDC94	Q9BW85	323 aa	Predicted RBP	12.97	□□□□□ -0.33
DDB1-223	ENST00000543658	SRRT	Q9BXP5	876 aa	Known RBP	12.97	□□□□□ -0.33
DDB1-223	ENST00000543658	CDT1	Q9H211	546 aa		12.97	□□□□□ -0.33
DDB1-223	ENST00000543658	IKZF4	Q9H2S9	585 aa		12.97	□□□□□ -0.33
DDB1-223	ENST00000543658	THAP9	Q9H5L6	903 aa		12.97	□□□□□ -0.33
DDB1-223	ENST00000543658	AGO3	Q9H9G7	860 aa	Known RBP	12.97	□□□□□ -0.33
DDB1-223	ENST00000543658	NR2E3	Q9Y5X4	410 aa		12.97	□□□□□ -0.33
DDB1-223	ENST00000543658		A0A0B4J269	797 aa		12.96	□□□□□ -0.33
DDB1-223	ENST00000543658	GOLGA8IP	A6NC78	632 aa		12.96	□□□□□ -0.33
DDB1-223	ENST00000543658	GOLGA8J	A6NMD2	632 aa		12.96	□□□□□ -0.33
DDB1-223	ENST00000543658	TTLL13P	A6NNM8	815 aa		12.96	□□□□□ -0.33
DDB1-223	ENST00000543658	SLC16A3	O15427	465 aa	Known RBP	12.96	□□□□□ -0.33
DDB1-223	ENST00000543658	EXTL3	O43909	919 aa		12.96	□□□□□ -0.33
DDB1-223	ENST00000543658	KRT13	P13646	458 aa		12.96	□□□□□ -0.33
DDB1-223	ENST00000543658	IBSP	P21815	317 aa	Predicted RBP	12.96	□□□□□ -0.33
DDB1-223	ENST00000543658	PROZ	P22891	400 aa		12.96	□□□□□ -0.33
DDB1-223	ENST00000543658	PSMC2	P35998	433 aa	Known RBP	12.96	□□□□□ -0.33
DDB1-223	ENST00000543658	YARS	P54577	528 aa	Known RBP	12.96	□□□□□ -0.33
DDB1-223	ENST00000543658	FPGS	Q05932	587 aa		12.96	□□□□□ -0.33
DDB1-223	ENST00000543658	SPAG1	Q07617	926 aa		12.96	□□□□□ -0.33
DDB1-223	ENST00000543658	MBTPS1	Q14703	1052 aa		12.96	□□□□□ -0.33
DDB1-223	ENST00000543658	PLEKHG4	Q58EX7	1191 aa		12.96	□□□□□ -0.33
DDB1-223	ENST00000543658	EEF1DP3	Q658K8	133 aa		12.96	□□□□□ -0.33
DDB1-223	ENST00000543658	CNKSR3	Q6P9H4	555 aa		12.96	□□□□□ -0.33
DDB1-223	ENST00000543658	LUZP1	Q86V48	1076 aa		12.96	□□□□□ -0.33
DDB1-223	ENST00000543658	FAM186B	Q8IYM0	893 aa		12.96	□□□□□ -0.33
DDB1-223	ENST00000543658	THNSL1	Q8IYQ7	743 aa		12.96	□□□□□ -0.33
DDB1-223	ENST00000543658	DBF4B	Q8NFT6	615 aa		12.96	□□□□□ -0.33
DDB1-223	ENST00000543658	ADAM2	Q99965	735 aa		12.96	□□□□□ -0.33
DDB1-223	ENST00000543658	FAM213A	Q9BRX8	229 aa		12.96	□□□□□ -0.33
DDB1-223	ENST00000543658	MKNK1	Q9BUB5	465 aa		12.96	□□□□□ -0.33
DDB1-223	ENST00000543658	RPF1	Q9H9Y2	349 aa	Known RBP	12.96	□□□□□ -0.33
DDB1-223	ENST00000543658	C1orf112	Q9NSG2	853 aa		12.96	□□□□□ -0.33
DDB1-223	ENST00000543658	STYXL1	Q9Y6J8	313 aa		12.96	□□□□□ -0.33
DDB1-223	ENST00000543658	ZNF233	A6NK53	670 aa		12.95	□□□□□ -0.34
DDB1-223	ENST00000543658	CXCL10	P02778	98 aa		12.95	□□□□□ -0.34
DDB1-223	ENST00000543658	CSF2RA	P15509	400 aa		12.95	□□□□□ -0.34
DDB1-223	ENST00000543658	ADSS	P30520	456 aa		12.95	□□□□□ -0.34
DDB1-223	ENST00000543658	HOXA11	P31270	313 aa	Predicted RBP	12.95	□□□□□ -0.34
DDB1-223	ENST00000543658	MTIF2	P46199	727 aa	Known RBP	12.95	□□□□□ -0.34
DDB1-223	ENST00000543658	OSTN	P61366	133 aa		12.95	□□□□□ -0.34
DDB1-223	ENST00000543658	IKBKE	Q14164	716 aa		12.95	□□□□□ -0.34
DDB1-223	ENST00000543658	SNRNP35	Q16560	246 aa	Known RBP	12.95	□□□□□ -0.34
DDB1-223	ENST00000543658	FILIP1	Q7Z7B0	1213 aa		12.95	□□□□□ -0.34
DDB1-223	ENST00000543658	DHX40	Q8IX18	779 aa	Known RBP	12.95	□□□□□ -0.34
DDB1-223	ENST00000543658	RDH13	Q8NBN7	331 aa		12.95	□□□□□ -0.34
DDB1-223	ENST00000543658	PGBD4	Q96DM1	585 aa		12.95	□□□□□ -0.34
DDB1-223	ENST00000543658	CNOT6L	Q96LI5	555 aa	Known RBP	12.95	□□□□□ -0.34
DDB1-223	ENST00000543658	DUSP9	Q99956	384 aa	Known RBP	12.95	□□□□□ -0.34
DDB1-223	ENST00000543658	APOL6	Q9BWW8	343 aa		12.95	□□□□□ -0.34
DDB1-223	ENST00000543658	EIF2A	Q9BY44	585 aa	Known RBP	12.95	□□□□□ -0.34
DDB1-223	ENST00000543658	METTL14	Q9HCE5	456 aa	Known RBP	12.95	□□□□□ -0.34
DDB1-223	ENST00000543658	TOPORS	Q9NS56	1045 aa	Predicted RBP	12.95	□□□□□ -0.34
DDB1-223	ENST00000543658	FAM105A	Q9NUU6	356 aa		12.95	□□□□□ -0.34
DDB1-223	ENST00000543658	RBAK	Q9NYW8	714 aa	Predicted RBP	12.95	□□□□□ -0.34
DDB1-223	ENST00000543658	PARP2	Q9UGN5	583 aa		12.95	□□□□□ -0.34
DDB1-223	ENST00000543658	LRFN2	Q9ULH4	789 aa		12.95	□□□□□ -0.34
DDB1-223	ENST00000543658	ZMYND8	Q9ULU4	1186 aa	Predicted RBP	12.95	□□□□□ -0.34
DDB1-223	ENST00000543658	EFCAB14	O75071	495 aa		12.94	□□□□□ -0.34
DDB1-223	ENST00000543658	CLTA	P09496	248 aa		12.94	□□□□□ -0.34
DDB1-223	ENST00000543658	ITGA4	P13612	1032 aa		12.94	□□□□□ -0.34
DDB1-223	ENST00000543658	SYN1	P17600	705 aa		12.94	□□□□□ -0.34
DDB1-223	ENST00000543658	GRM5	P41594	1212 aa		12.94	□□□□□ -0.34
DDB1-223	ENST00000543658	ACOT2	P49753	483 aa		12.94	□□□□□ -0.34
DDB1-223	ENST00000543658	PPP2R3A	Q06190	1150 aa		12.94	□□□□□ -0.34
DDB1-223	ENST00000543658	IQCB1	Q15051	598 aa		12.94	□□□□□ -0.34

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