RNA–Protein interactions for RNA: ENST00000543627.1

DDB1-222, Transcript of damage specific DNA binding protein 1, human

TSL 5

Gene DDB1, Length 540 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDB1-222	ENST00000543627	APBB1IP	Q7Z5R6	666 aa	Predicted RBP	12.14	□□□□□ -0.47
DDB1-222	ENST00000543627	RABGGTA	Q92696	567 aa		12.14	□□□□□ -0.47
DDB1-222	ENST00000543627	HLA-C	Q95604	372 aa		12.14	□□□□□ -0.47
DDB1-222	ENST00000543627	TMEM169	Q96HH4	297 aa		12.14	□□□□□ -0.47
DDB1-222	ENST00000543627	ZBTB45	Q96K62	511 aa	Predicted RBP	12.14	□□□□□ -0.47
DDB1-222	ENST00000543627	SPATA32	Q96LK8	384 aa		12.14	□□□□□ -0.47
DDB1-222	ENST00000543627	LMAN2L	Q9H0V9	348 aa		12.14	□□□□□ -0.47
DDB1-222	ENST00000543627	TMEM134	Q9H6X4	195 aa		12.14	□□□□□ -0.47
DDB1-222	ENST00000543627	C17orf75	Q9HAS0	396 aa		12.14	□□□□□ -0.47
DDB1-222	ENST00000543627	PARVG	Q9HBI0	331 aa		12.14	□□□□□ -0.47
DDB1-222	ENST00000543627	CLDND1	Q9NY35	253 aa		12.14	□□□□□ -0.47
DDB1-222	ENST00000543627	FAM13B	Q9NYF5	915 aa		12.14	□□□□□ -0.47
DDB1-222	ENST00000543627	THEG	Q9P2T0	379 aa		12.14	□□□□□ -0.47
DDB1-222	ENST00000543627	STK17A	Q9UEE5	414 aa		12.14	□□□□□ -0.47
DDB1-222	ENST00000543627	KCNG1	Q9UIX4	513 aa		12.14	□□□□□ -0.47
DDB1-222	ENST00000543627	PCDHA7	Q9UN72	937 aa		12.14	□□□□□ -0.47
DDB1-222	ENST00000543627	PRG3	Q9Y2Y8	225 aa	Predicted RBP	12.14	□□□□□ -0.47
DDB1-222	ENST00000543627	ZDHHC9	Q9Y397	364 aa		12.14	□□□□□ -0.47
DDB1-222	ENST00000543627	PHLPP2	Q6ZVD8	1323 aa		12.13	□□□□□ -0.47
DDB1-222	ENST00000543627	COL4A4	P53420	1690 aa	Predicted RBP	12.13	□□□□□ -0.47
DDB1-222	ENST00000543627		A0A087X0B3	334 aa		12.13	□□□□□ -0.47
DDB1-222	ENST00000543627	MYMK	A6NI61	221 aa		12.13	□□□□□ -0.47
DDB1-222	ENST00000543627	POLR2D	O15514	142 aa	Known RBP	12.13	□□□□□ -0.47
DDB1-222	ENST00000543627	NR1I2	O75469	434 aa		12.13	□□□□□ -0.47
DDB1-222	ENST00000543627	GALT	P07902	379 aa		12.13	□□□□□ -0.47
DDB1-222	ENST00000543627	GTF2F1	P35269	517 aa	Known RBP eCLIP	12.13	□□□□□ -0.47
DDB1-222	ENST00000543627	SLC11A1	P49279	550 aa		12.13	□□□□□ -0.47
DDB1-222	ENST00000543627	ERVFC1	P60507	584 aa		12.13	□□□□□ -0.47
DDB1-222	ENST00000543627	KRT85	P78386	507 aa		12.13	□□□□□ -0.47
DDB1-222	ENST00000543627	SEZ6	Q53EL9	994 aa		12.13	□□□□□ -0.47
DDB1-222	ENST00000543627	SHC4	Q6S5L8	630 aa		12.13	□□□□□ -0.47
DDB1-222	ENST00000543627	HAUS6	Q7Z4H7	955 aa		12.13	□□□□□ -0.47
DDB1-222	ENST00000543627	ADGRD2	Q7Z7M1	963 aa		12.13	□□□□□ -0.47
DDB1-222	ENST00000543627	FAM178B	Q8IXR5	827 aa		12.13	□□□□□ -0.47
DDB1-222	ENST00000543627	MRPS27	Q92552	414 aa	Known RBP	12.13	□□□□□ -0.47
DDB1-222	ENST00000543627	DDX12P	Q92771	950 aa		12.13	□□□□□ -0.47
DDB1-222	ENST00000543627	ACO2	Q99798	780 aa	Known RBP	12.13	□□□□□ -0.47
DDB1-222	ENST00000543627	TCF25	Q9BQ70	676 aa		12.13	□□□□□ -0.47
DDB1-222	ENST00000543627	TLE6	Q9H808	572 aa		12.13	□□□□□ -0.47
DDB1-222	ENST00000543627	TLR9	Q9NR96	1032 aa		12.13	□□□□□ -0.47
DDB1-222	ENST00000543627	ODF2L	Q9ULJ1	636 aa		12.13	□□□□□ -0.47
DDB1-222	ENST00000543627	GIT1	Q9Y2X7	761 aa		12.13	□□□□□ -0.47
DDB1-222	ENST00000543627		H0YCG3	227 aa		12.12	□□□□□ -0.47
DDB1-222	ENST00000543627	NRP1	O14786	923 aa		12.12	□□□□□ -0.47
DDB1-222	ENST00000543627	RECQL4	O94761	1208 aa		12.12	□□□□□ -0.47
DDB1-222	ENST00000543627	CXCL14	O95715	111 aa		12.12	□□□□□ -0.47
DDB1-222	ENST00000543627	MAPT	P10636	758 aa	Known RBP	12.12	□□□□□ -0.47
DDB1-222	ENST00000543627	KCNA5	P22460	613 aa		12.12	□□□□□ -0.47
DDB1-222	ENST00000543627	PPM1A	P35813	382 aa		12.12	□□□□□ -0.47
DDB1-222	ENST00000543627	NRIP1	P48552	1158 aa		12.12	□□□□□ -0.47
DDB1-222	ENST00000543627	LIG4	P49917	911 aa		12.12	□□□□□ -0.47
DDB1-222	ENST00000543627	YARS	P54577	528 aa	Known RBP	12.12	□□□□□ -0.47
DDB1-222	ENST00000543627	CLUL1	Q15846	466 aa		12.12	□□□□□ -0.47
DDB1-222	ENST00000543627	DCAF4L1	Q3SXM0	396 aa		12.12	□□□□□ -0.47
DDB1-222	ENST00000543627	HERC4	Q5GLZ8	1057 aa	Predicted RBP	12.12	□□□□□ -0.47
DDB1-222	ENST00000543627	GLRA4	Q5JXX5	417 aa		12.12	□□□□□ -0.47
DDB1-222	ENST00000543627	ATL3	Q6DD88	541 aa		12.12	□□□□□ -0.47
DDB1-222	ENST00000543627	TAS1R3	Q7RTX0	852 aa		12.12	□□□□□ -0.47
DDB1-222	ENST00000543627	SFR1	Q86XK3	245 aa		12.12	□□□□□ -0.47
DDB1-222	ENST00000543627	VPS52	Q8N1B4	723 aa		12.12	□□□□□ -0.47
DDB1-222	ENST00000543627	SLC39A11	Q8N1S5	342 aa		12.12	□□□□□ -0.47
DDB1-222	ENST00000543627	CEP120	Q8N960	986 aa		12.12	□□□□□ -0.47
DDB1-222	ENST00000543627	IQUB	Q8NA54	791 aa		12.12	□□□□□ -0.47
DDB1-222	ENST00000543627	TMEM161B	Q8NDZ6	487 aa		12.12	□□□□□ -0.47
DDB1-222	ENST00000543627	SPIRE2	Q8WWL2	714 aa		12.12	□□□□□ -0.47
DDB1-222	ENST00000543627	PPP2R3C	Q969Q6	453 aa		12.12	□□□□□ -0.47
DDB1-222	ENST00000543627	CCDC94	Q9BW85	323 aa	Predicted RBP	12.12	□□□□□ -0.47
DDB1-222	ENST00000543627	MRPL44	Q9H9J2	332 aa	Known RBP	12.12	□□□□□ -0.47
DDB1-222	ENST00000543627	GDPD2	Q9HCC8	539 aa		12.12	□□□□□ -0.47
DDB1-222	ENST00000543627	ARHGAP28	Q9P2N2	729 aa		12.12	□□□□□ -0.47
DDB1-222	ENST00000543627	CACNG4	Q9UBN1	327 aa		12.12	□□□□□ -0.47
DDB1-222	ENST00000543627	RCOR1	Q9UKL0	485 aa		12.12	□□□□□ -0.47
DDB1-222	ENST00000543627	TNFSF13B	Q9Y275	285 aa		12.12	□□□□□ -0.47
DDB1-222	ENST00000543627	ATP6V1D	Q9Y5K8	247 aa		12.12	□□□□□ -0.47
DDB1-222	ENST00000543627	CUL9	Q8IWT3	2517 aa		12.12	□□□□□ -0.47
DDB1-222	ENST00000543627	COL4A6	Q14031	1691 aa		12.12	□□□□□ -0.47
DDB1-222	ENST00000543627	RALGAPA2	Q2PPJ7	1873 aa		12.12	□□□□□ -0.47
DDB1-222	ENST00000543627	CASTOR2	A6NHX0	329 aa		12.11	□□□□□ -0.47
DDB1-222	ENST00000543627		H3BQ06	376 aa	Predicted RBP	12.11	□□□□□ -0.47
DDB1-222	ENST00000543627	DLL1	O00548	723 aa		12.11	□□□□□ -0.47
DDB1-222	ENST00000543627	C2CD2L	O14523	706 aa		12.11	□□□□□ -0.47
DDB1-222	ENST00000543627	CLDN3	O15551	220 aa		12.11	□□□□□ -0.47
DDB1-222	ENST00000543627	B4GALT3	O60512	393 aa		12.11	□□□□□ -0.47
DDB1-222	ENST00000543627	AFM	P43652	599 aa		12.11	□□□□□ -0.47
DDB1-222	ENST00000543627	NCKAP1L	P55160	1127 aa		12.11	□□□□□ -0.47
DDB1-222	ENST00000543627	MRPS5	P82675	430 aa	Known RBP	12.11	□□□□□ -0.47
DDB1-222	ENST00000543627	UBE3A	Q05086	875 aa		12.11	□□□□□ -0.47
DDB1-222	ENST00000543627	CAMK1	Q14012	370 aa		12.11	□□□□□ -0.47
DDB1-222	ENST00000543627	BMS1	Q14692	1282 aa	Known RBP	12.11	□□□□□ -0.47
DDB1-222	ENST00000543627	ZC2HC1C	Q53FD0	456 aa	Predicted RBP	12.11	□□□□□ -0.47
DDB1-222	ENST00000543627	LLGL2	Q6P1M3	1020 aa		12.11	□□□□□ -0.47
DDB1-222	ENST00000543627	MPZL3	Q6UWV2	235 aa		12.11	□□□□□ -0.47
DDB1-222	ENST00000543627	TMEM173	Q86WV6	379 aa	Predicted RBP	12.11	□□□□□ -0.47
DDB1-222	ENST00000543627	HASPIN	Q8TF76	798 aa		12.11	□□□□□ -0.47
DDB1-222	ENST00000543627	NOC3L	Q8WTT2	800 aa	Known RBP	12.11	□□□□□ -0.47
DDB1-222	ENST00000543627	AUTS2	Q8WXX7	1259 aa		12.11	□□□□□ -0.47
DDB1-222	ENST00000543627	FAM212A	Q96EL1	285 aa		12.11	□□□□□ -0.47
DDB1-222	ENST00000543627	NTPCR	Q9BSD7	190 aa	Known RBP	12.11	□□□□□ -0.47
DDB1-222	ENST00000543627	CDT1	Q9H211	546 aa		12.11	□□□□□ -0.47
DDB1-222	ENST00000543627	CXCL16	Q9H2A7	254 aa		12.11	□□□□□ -0.47

Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms