RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	EXOC3	O60645	756 aa		11.09	□□□□□ -0.63
CPSF7-221	ENST00000543545	BAIAP3	O94812	1187 aa		11.09	□□□□□ -0.63
CPSF7-221	ENST00000543545	NR3C1	P04150	777 aa		11.09	□□□□□ -0.63
CPSF7-221	ENST00000543545	STAG3L1	P0CL83	205 aa		11.09	□□□□□ -0.63
CPSF7-221	ENST00000543545	ITGA4	P13612	1032 aa		11.09	□□□□□ -0.63
CPSF7-221	ENST00000543545	GART	P22102	1010 aa		11.09	□□□□□ -0.63
CPSF7-221	ENST00000543545	CCNE1	P24864	410 aa		11.09	□□□□□ -0.63
CPSF7-221	ENST00000543545	YARS	P54577	528 aa	Known RBP	11.09	□□□□□ -0.63
CPSF7-221	ENST00000543545	MCL1	Q07820	350 aa		11.09	□□□□□ -0.63
CPSF7-221	ENST00000543545	SEZ6	Q53EL9	994 aa		11.09	□□□□□ -0.63
CPSF7-221	ENST00000543545	COBLL1	Q53SF7	1204 aa		11.09	□□□□□ -0.63
CPSF7-221	ENST00000543545	UBXN11	Q5T124	520 aa		11.09	□□□□□ -0.63
CPSF7-221	ENST00000543545	ANKRD40	Q6AI12	368 aa		11.09	□□□□□ -0.63
CPSF7-221	ENST00000543545	SLC39A4	Q6P5W5	647 aa		11.09	□□□□□ -0.63
CPSF7-221	ENST00000543545	LIN28B	Q6ZN17	250 aa	Known RBP eCLIP	11.09	□□□□□ -0.63
CPSF7-221	ENST00000543545	ECHDC2	Q86YB7	292 aa		11.09	□□□□□ -0.63
CPSF7-221	ENST00000543545	PGBD4	Q96DM1	585 aa		11.09	□□□□□ -0.63
CPSF7-221	ENST00000543545	VWCE	Q96DN2	955 aa		11.09	□□□□□ -0.63
CPSF7-221	ENST00000543545	SAAL1	Q96ER3	474 aa		11.09	□□□□□ -0.63
CPSF7-221	ENST00000543545	CBWD1	Q9BRT8	395 aa		11.09	□□□□□ -0.63
CPSF7-221	ENST00000543545	FAM213A	Q9BRX8	229 aa		11.09	□□□□□ -0.63
CPSF7-221	ENST00000543545	CCDC94	Q9BW85	323 aa	Predicted RBP	11.09	□□□□□ -0.63
CPSF7-221	ENST00000543545	NAT10	Q9H0A0	1025 aa	Known RBP	11.09	□□□□□ -0.63
CPSF7-221	ENST00000543545	CDT1	Q9H211	546 aa		11.09	□□□□□ -0.63
CPSF7-221	ENST00000543545	KCTD10	Q9H3F6	313 aa		11.09	□□□□□ -0.63
CPSF7-221	ENST00000543545	PTPRH	Q9HD43	1115 aa		11.09	□□□□□ -0.63
CPSF7-221	ENST00000543545	RNF216	Q9NWF9	866 aa	Predicted RBP	11.09	□□□□□ -0.63
CPSF7-221	ENST00000543545	SNTG2	Q9NY99	539 aa		11.09	□□□□□ -0.63
CPSF7-221	ENST00000543545	HES2	Q9Y543	173 aa		11.09	□□□□□ -0.63
CPSF7-221	ENST00000543545	IPP	Q9Y573	584 aa		11.09	□□□□□ -0.63
CPSF7-221	ENST00000543545	SLC4A7	Q9Y6M7	1214 aa		11.09	□□□□□ -0.63
CPSF7-221	ENST00000543545		A0A0B4J269	797 aa		11.08	□□□□□ -0.64
CPSF7-221	ENST00000543545	LOC101059915	A0A1B0GWI6	518 aa	Predicted RBP	11.08	□□□□□ -0.64
CPSF7-221	ENST00000543545		C9IYK1	514 aa		11.08	□□□□□ -0.64
CPSF7-221	ENST00000543545	CETN3	O15182	167 aa		11.08	□□□□□ -0.64
CPSF7-221	ENST00000543545	OGT	O15294	1046 aa		11.08	□□□□□ -0.64
CPSF7-221	ENST00000543545	LDHA	P00338	332 aa	Known RBP	11.08	□□□□□ -0.64
CPSF7-221	ENST00000543545	CLTA	P09496	248 aa		11.08	□□□□□ -0.64
CPSF7-221	ENST00000543545	PROZ	P22891	400 aa		11.08	□□□□□ -0.64
CPSF7-221	ENST00000543545	AKAP5	P24588	427 aa		11.08	□□□□□ -0.64
CPSF7-221	ENST00000543545	ADSS	P30520	456 aa		11.08	□□□□□ -0.64
CPSF7-221	ENST00000543545	ACOT2	P49753	483 aa		11.08	□□□□□ -0.64
CPSF7-221	ENST00000543545	ADAM9	Q13443	819 aa		11.08	□□□□□ -0.64
CPSF7-221	ENST00000543545	HSP90AA2P	Q14568	343 aa	Predicted RBP	11.08	□□□□□ -0.64
CPSF7-221	ENST00000543545	KYAT1	Q16773	422 aa		11.08	□□□□□ -0.64
CPSF7-221	ENST00000543545	CEP135	Q66GS9	1140 aa		11.08	□□□□□ -0.64
CPSF7-221	ENST00000543545	CENPP	Q6IPU0	288 aa		11.08	□□□□□ -0.64
CPSF7-221	ENST00000543545	FAM117B	Q6P1L5	589 aa		11.08	□□□□□ -0.64
CPSF7-221	ENST00000543545	RDH13	Q8NBN7	331 aa		11.08	□□□□□ -0.64
CPSF7-221	ENST00000543545	LINC01599	Q8WXQ3	324 aa		11.08	□□□□□ -0.64
CPSF7-221	ENST00000543545	HERVK_113	Q902F9	699 aa		11.08	□□□□□ -0.64
CPSF7-221	ENST00000543545	LPP	Q93052	612 aa		11.08	□□□□□ -0.64
CPSF7-221	ENST00000543545	FAM212A	Q96EL1	285 aa		11.08	□□□□□ -0.64
CPSF7-221	ENST00000543545	RNPC3	Q96LT9	517 aa	Known RBP	11.08	□□□□□ -0.64
CPSF7-221	ENST00000543545	ACAP3	Q96P50	834 aa		11.08	□□□□□ -0.64
CPSF7-221	ENST00000543545	ZBED2	Q9BTP6	218 aa		11.08	□□□□□ -0.64
CPSF7-221	ENST00000543545	TRAIP	Q9BWF2	469 aa		11.08	□□□□□ -0.64
CPSF7-221	ENST00000543545	DNAJC25	Q9H1X3	360 aa		11.08	□□□□□ -0.64
CPSF7-221	ENST00000543545	NXF3	Q9H4D5	531 aa	Known RBP	11.08	□□□□□ -0.64
CPSF7-221	ENST00000543545	RPF1	Q9H9Y2	349 aa	Known RBP	11.08	□□□□□ -0.64
CPSF7-221	ENST00000543545	HSPBP1	Q9NZL4	362 aa		11.08	□□□□□ -0.64
CPSF7-221	ENST00000543545	RWDD2A	Q9UIY3	292 aa		11.08	□□□□□ -0.64
CPSF7-221	ENST00000543545	TRAF3IP3	Q9Y228	551 aa		11.08	□□□□□ -0.64
CPSF7-221	ENST00000543545	STYXL1	Q9Y6J8	313 aa		11.08	□□□□□ -0.64
CPSF7-221	ENST00000543545	MKI67	P46013	3256 aa	Known RBP	11.08	□□□□□ -0.64
CPSF7-221	ENST00000543545	ZMYM2	Q9UBW7	1377 aa		11.07	□□□□□ -0.64
CPSF7-221	ENST00000543545	TRIM49B	A6NDI0	452 aa		11.07	□□□□□ -0.64
CPSF7-221	ENST00000543545	ABLIM1	O14639	778 aa		11.07	□□□□□ -0.64
CPSF7-221	ENST00000543545	KIAA0391	O15091	583 aa	Known RBP	11.07	□□□□□ -0.64
CPSF7-221	ENST00000543545	EXTL3	O43909	919 aa		11.07	□□□□□ -0.64
CPSF7-221	ENST00000543545	ZNF623	O75123	536 aa		11.07	□□□□□ -0.64
CPSF7-221	ENST00000543545	EOMES	O95936	686 aa		11.07	□□□□□ -0.64
CPSF7-221	ENST00000543545	NR2F2	P24468	414 aa		11.07	□□□□□ -0.64
CPSF7-221	ENST00000543545	ERCC5	P28715	1186 aa	Predicted RBP	11.07	□□□□□ -0.64
CPSF7-221	ENST00000543545	GRM5	P41594	1212 aa		11.07	□□□□□ -0.64
CPSF7-221	ENST00000543545	PMS1	P54277	932 aa	Known RBP	11.07	□□□□□ -0.64
CPSF7-221	ENST00000543545	WDR5	P61964	334 aa	Known RBP	11.07	□□□□□ -0.64
CPSF7-221	ENST00000543545	FAM189B	P81408	668 aa		11.07	□□□□□ -0.64
CPSF7-221	ENST00000543545	FKBP3	Q00688	224 aa	Known RBP	11.07	□□□□□ -0.64
CPSF7-221	ENST00000543545	LRRC63	Q05C16	580 aa		11.07	□□□□□ -0.64
CPSF7-221	ENST00000543545	SHH	Q15465	462 aa		11.07	□□□□□ -0.64
CPSF7-221	ENST00000543545	ANO6	Q4KMQ2	910 aa		11.07	□□□□□ -0.64
CPSF7-221	ENST00000543545	CT47A1	Q5JQC4	288 aa	Predicted RBP	11.07	□□□□□ -0.64
CPSF7-221	ENST00000543545	C9orf50	Q5SZB4	431 aa		11.07	□□□□□ -0.64
CPSF7-221	ENST00000543545	MRPL10	Q7Z7H8	261 aa	Known RBP	11.07	□□□□□ -0.64
CPSF7-221	ENST00000543545	NPAS4	Q8IUM7	802 aa		11.07	□□□□□ -0.64
CPSF7-221	ENST00000543545	CREBRF	Q8IUR6	639 aa		11.07	□□□□□ -0.64
CPSF7-221	ENST00000543545	ABI1	Q8IZP0	508 aa		11.07	□□□□□ -0.64
CPSF7-221	ENST00000543545	GPD1L	Q8N335	351 aa		11.07	□□□□□ -0.64
CPSF7-221	ENST00000543545	CSGALNACT2	Q8N6G5	542 aa		11.07	□□□□□ -0.64
CPSF7-221	ENST00000543545	CEP120	Q8N960	986 aa		11.07	□□□□□ -0.64
CPSF7-221	ENST00000543545	XXYLT1	Q8NBI6	393 aa		11.07	□□□□□ -0.64
CPSF7-221	ENST00000543545	SMG8	Q8ND04	991 aa	Known RBP	11.07	□□□□□ -0.64
CPSF7-221	ENST00000543545	EEF2KMT	Q96G04	330 aa		11.07	□□□□□ -0.64
CPSF7-221	ENST00000543545	GDF15	Q99988	308 aa		11.07	□□□□□ -0.64
CPSF7-221	ENST00000543545	ANP32E	Q9BTT0	268 aa		11.07	□□□□□ -0.64
CPSF7-221	ENST00000543545	HAPLN2	Q9GZV7	340 aa		11.07	□□□□□ -0.64
CPSF7-221	ENST00000543545	RNF39	Q9H2S5	420 aa		11.07	□□□□□ -0.64
CPSF7-221	ENST00000543545	KIAA1586	Q9HCI6	787 aa		11.07	□□□□□ -0.64
CPSF7-221	ENST00000543545	TOPORS	Q9NS56	1045 aa	Predicted RBP	11.07	□□□□□ -0.64

Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms