RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 ZNF862O60290 1169 aa10.64□□□□□ -0.71
SS18-205ENST00000542420 CEP104O60308 925 aa10.64□□□□□ -0.71
SS18-205ENST00000542420 RGS20O76081 388 aa10.64□□□□□ -0.71
SS18-205ENST00000542420 CTNNA2P26232 953 aa10.64□□□□□ -0.71
SS18-205ENST00000542420 ADSSP30520 456 aa10.64□□□□□ -0.71
SS18-205ENST00000542420 HSPA9P38646 679 aaKnown RBP10.64□□□□□ -0.71
SS18-205ENST00000542420 GTF2A1P52655 376 aaPredicted RBP10.64□□□□□ -0.71
SS18-205ENST00000542420 AP3M2P53677 418 aa10.64□□□□□ -0.71
SS18-205ENST00000542420 GRM1Q13255 1194 aa10.64□□□□□ -0.71
SS18-205ENST00000542420 MTMR3Q13615 1198 aa10.64□□□□□ -0.71
SS18-205ENST00000542420 DHX34Q14147 1143 aaKnown RBP10.64□□□□□ -0.71
SS18-205ENST00000542420 PSMD6Q15008 389 aa10.64□□□□□ -0.71
SS18-205ENST00000542420 ENOX2Q16206 610 aaKnown RBP10.64□□□□□ -0.71
SS18-205ENST00000542420 KCNV1Q6PIU1 500 aa10.64□□□□□ -0.71
SS18-205ENST00000542420 PROCA1Q8NCQ7 364 aaPredicted RBP10.64□□□□□ -0.71
SS18-205ENST00000542420 MS4A14Q96JA4 679 aa10.64□□□□□ -0.71
SS18-205ENST00000542420 WNT8AQ9H1J5 351 aa10.64□□□□□ -0.71
SS18-205ENST00000542420 POLD4Q9HCU8 107 aa10.64□□□□□ -0.71
SS18-205ENST00000542420 CWC15Q9P013 229 aaKnown RBP10.64□□□□□ -0.71
SS18-205ENST00000542420 GTF3C4Q9UKN8 822 aa10.64□□□□□ -0.71
SS18-205ENST00000542420 GJA3Q9Y6H8 435 aa10.64□□□□□ -0.71
SS18-205ENST00000542420 ZNF541Q9H0D2 1346 aa10.64□□□□□ -0.71
SS18-205ENST00000542420 GOLGA6L10A0A0M3HER8 536 aa10.63□□□□□ -0.71
SS18-205ENST00000542420 ZNF233A6NK53 670 aa10.63□□□□□ -0.71
SS18-205ENST00000542420 CCDC169A6NNP5 214 aa10.63□□□□□ -0.71
SS18-205ENST00000542420 AGPSO00116 658 aa10.63□□□□□ -0.71
SS18-205ENST00000542420 IRF6O14896 467 aa10.63□□□□□ -0.71
SS18-205ENST00000542420 BUB1BO60566 1050 aaPredicted RBP10.63□□□□□ -0.71
SS18-205ENST00000542420 CYP1A2P05177 515 aa10.63□□□□□ -0.71
SS18-205ENST00000542420 MYBL1P10243 752 aa10.63□□□□□ -0.71
SS18-205ENST00000542420 ACTN2P35609 894 aa10.63□□□□□ -0.71
SS18-205ENST00000542420 GCLMP48507 274 aa10.63□□□□□ -0.71
SS18-205ENST00000542420 DRG2P55039 364 aaKnown RBP10.63□□□□□ -0.71
SS18-205ENST00000542420 DLG4P78352 724 aa10.63□□□□□ -0.71
SS18-205ENST00000542420 CDR2Q01850 454 aa10.63□□□□□ -0.71
SS18-205ENST00000542420 PRKCEQ02156 737 aa10.63□□□□□ -0.71
SS18-205ENST00000542420 ARHGEF19Q8IW93 802 aa10.63□□□□□ -0.71
SS18-205ENST00000542420 UBL4BQ8N7F7 174 aa10.63□□□□□ -0.71
SS18-205ENST00000542420 PLEKHO2Q8TD55 490 aa10.63□□□□□ -0.71
SS18-205ENST00000542420 EPS8L1Q8TE68 723 aa10.63□□□□□ -0.71
SS18-205ENST00000542420 HDAC7Q8WUI4 952 aa10.63□□□□□ -0.71
SS18-205ENST00000542420 FAM167AQ96KS9 214 aa10.63□□□□□ -0.71
SS18-205ENST00000542420 RUFY1Q96T51 708 aa10.63□□□□□ -0.71
SS18-205ENST00000542420 MYCBPQ99417 103 aaPredicted RBP10.63□□□□□ -0.71
SS18-205ENST00000542420 KRT12Q99456 494 aa10.63□□□□□ -0.71
SS18-205ENST00000542420 RAB17Q9H0T7 212 aa10.63□□□□□ -0.71
SS18-205ENST00000542420 IKZF4Q9H2S9 585 aa10.63□□□□□ -0.71
SS18-205ENST00000542420 PCIF1Q9H4Z3 704 aa10.63□□□□□ -0.71
SS18-205ENST00000542420 DHX33Q9H6R0 707 aaKnown RBP10.63□□□□□ -0.71
SS18-205ENST00000542420 AVENQ9NQS1 362 aaPredicted RBP10.63□□□□□ -0.71
SS18-205ENST00000542420 XPNPEP1Q9NQW7 623 aa10.63□□□□□ -0.71
SS18-205ENST00000542420 RAB20Q9NX57 234 aa10.63□□□□□ -0.71
SS18-205ENST00000542420 SRRM3A6NNA2 597 aaPredicted RBP10.63□□□□□ -0.71
SS18-205ENST00000542420 TMCO5BA8MYB1 307 aa10.63□□□□□ -0.71
SS18-205ENST00000542420 SHOX2O60902 331 aaPredicted RBP10.63□□□□□ -0.71
SS18-205ENST00000542420 ZBTB7AO95365 584 aa10.63□□□□□ -0.71
SS18-205ENST00000542420 PTENP60484 403 aa10.63□□□□□ -0.71
SS18-205ENST00000542420 ARHGAP44Q17R89 818 aa10.63□□□□□ -0.71
SS18-205ENST00000542420 PLA2G4FQ68DD2 849 aa10.63□□□□□ -0.71
SS18-205ENST00000542420 TRIM72Q6ZMU5 477 aa10.63□□□□□ -0.71
SS18-205ENST00000542420 HELQQ8TDG4 1101 aa10.63□□□□□ -0.71
SS18-205ENST00000542420 PORCNQ9H237 461 aa10.63□□□□□ -0.71
SS18-205ENST00000542420 EPB41L5Q9HCM4 733 aa10.63□□□□□ -0.71
SS18-205ENST00000542420 ANKRD63C9JTQ0 380 aa10.62□□□□□ -0.71
SS18-205ENST00000542420 RAD51CO43502 376 aa10.62□□□□□ -0.71
SS18-205ENST00000542420 OATP04181 439 aa10.62□□□□□ -0.71
SS18-205ENST00000542420 GLI1P08151 1106 aa10.62□□□□□ -0.71
SS18-205ENST00000542420 ARL2P36404 184 aa10.62□□□□□ -0.71
SS18-205ENST00000542420 GGCXP38435 758 aa10.62□□□□□ -0.71
SS18-205ENST00000542420 PDE6CP51160 858 aa10.62□□□□□ -0.71
SS18-205ENST00000542420 GUCY2DQ02846 1103 aa10.62□□□□□ -0.71
SS18-205ENST00000542420 NEDD9Q14511 834 aa10.62□□□□□ -0.71
SS18-205ENST00000542420 FAM160B1Q5W0V3 765 aa10.62□□□□□ -0.71
SS18-205ENST00000542420 SWSAP1Q6NVH7 229 aa10.62□□□□□ -0.71
SS18-205ENST00000542420 SLC39A4Q6P5W5 647 aa10.62□□□□□ -0.71
SS18-205ENST00000542420 LEKR1Q6ZMV7 388 aa10.62□□□□□ -0.71
SS18-205ENST00000542420 CCDC60Q8IWA6 550 aaPredicted RBP10.62□□□□□ -0.71
SS18-205ENST00000542420 RPUSD2Q8IZ73 545 aaKnown RBP10.62□□□□□ -0.71
SS18-205ENST00000542420 IQCKQ8N0W5 287 aa10.62□□□□□ -0.71
SS18-205ENST00000542420 FAM76AQ8TAV0 307 aa10.62□□□□□ -0.71
SS18-205ENST00000542420 POMGNT1Q8WZA1 660 aa10.62□□□□□ -0.71
SS18-205ENST00000542420 ZKSCAN4Q969J2 545 aaPredicted RBP10.62□□□□□ -0.71
SS18-205ENST00000542420 WNK4Q96J92 1243 aa10.62□□□□□ -0.71
SS18-205ENST00000542420 PSMB7Q99436 277 aa10.62□□□□□ -0.71
SS18-205ENST00000542420 ZCCHC17Q9NP64 241 aaKnown RBP10.62□□□□□ -0.71
SS18-205ENST00000542420 GPRC5CQ9NQ84 441 aa10.62□□□□□ -0.71
SS18-205ENST00000542420 ZNF302Q9NR11 478 aa10.62□□□□□ -0.71
SS18-205ENST00000542420 KRIT1O00522 736 aa10.62□□□□□ -0.71
SS18-205ENST00000542420 SLC25A27O95847 323 aa10.62□□□□□ -0.71
SS18-205ENST00000542420 MATR3P43243 847 aaKnown RBP eCLIP10.62□□□□□ -0.719e-6■■■■□ 21.7
SS18-205ENST00000542420 ALDH5A1P51649 535 aaPredicted RBP10.62□□□□□ -0.71
SS18-205ENST00000542420 SKOR1P84550 965 aa10.62□□□□□ -0.71
SS18-205ENST00000542420 POU5F1Q01860 360 aaKnown RBP10.62□□□□□ -0.71
SS18-205ENST00000542420 STRN3Q13033 797 aa10.62□□□□□ -0.71
SS18-205ENST00000542420 EMC2Q15006 297 aa10.62□□□□□ -0.71
SS18-205ENST00000542420 CFAP58Q5T655 872 aa10.62□□□□□ -0.71
SS18-205ENST00000542420 MAEAQ7L5Y9 396 aa10.62□□□□□ -0.71
SS18-205ENST00000542420 SRLQ86TD4 932 aa10.62□□□□□ -0.71
SS18-205ENST00000542420 CBWD2Q8IUF1 395 aa10.62□□□□□ -0.71
SS18-205ENST00000542420 C10orf67Q8IYJ2 551 aa10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms